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Saturday, July 1, 2023

Ionic compound

From Wikipedia, the free encyclopedia
The crystal structure of sodium chloride, NaCl, a typical ionic compound. The purple spheres represent sodium cations, Na+, and the green spheres represent chloride anions, Cl. The yellow stipples show the electrostatic forces.

In chemistry, an ionic compound is a chemical compound composed of ions held together by electrostatic forces termed ionic bonding. The compound is neutral overall, but consists of positively charged ions called cations and negatively charged ions called anions. These can be simple ions such as the sodium (Na+) and chloride (Cl) in sodium chloride, or polyatomic species such as the ammonium (NH+
4
) and carbonate (CO2−
3
) ions in ammonium carbonate. Individual ions within an ionic compound usually have multiple nearest neighbours, so are not considered to be part of molecules, but instead part of a continuous three-dimensional network. Ionic compounds usually form crystalline structures when solid.

Ionic compounds containing basic ions hydroxide (OH) or oxide (O2−) are classified as bases. Ionic compounds without these ions are also known as salts and can be formed by acid–base reactions. Ionic compounds can also be produced from their constituent ions by evaporation of their solvent, precipitation, freezing, a solid-state reaction, or the electron transfer reaction of reactive metals with reactive non-metals, such as halogen gases.

Ionic compounds typically have high melting and boiling points, and are hard and brittle. As solids they are almost always electrically insulating, but when melted or dissolved they become highly conductive, because the ions are mobilized.

History of discovery

The word ion is the Greek ἰόν, ion, "going", the present participle of ἰέναι, ienai, "to go". This term was introduced by physicist and chemist Michael Faraday in 1834 for the then-unknown species that goes from one electrode to the other through an aqueous medium.

X-ray spectrometer developed by Bragg

In 1913 the crystal structure of sodium chloride was determined by William Henry Bragg and William Lawrence Bragg. This revealed that there were six equidistant nearest-neighbours for each atom, demonstrating that the constituents were not arranged in molecules or finite aggregates, but instead as a network with long-range crystalline order. Many other inorganic compounds were also found to have similar structural features. These compounds were soon described as being constituted of ions rather than neutral atoms, but proof of this hypothesis was not found until the mid-1920s, when X-ray reflection experiments (which detect the density of electrons), were performed.

Principal contributors to the development of a theoretical treatment of ionic crystal structures were Max Born, Fritz Haber, Alfred Landé, Erwin Madelung, Paul Peter Ewald, and Kazimierz Fajans.[7] Born predicted crystal energies based on the assumption of ionic constituents, which showed good correspondence to thermochemical measurements, further supporting the assumption.

Formation

White crystals form a mineral sample of halite, shown against a black background.
Halite, the mineral form of sodium chloride, forms when salty water evaporates leaving the ions behind.

Ionic compounds can be produced from their constituent ions by evaporation, precipitation, or freezing. Reactive metals such as the alkali metals can react directly with the highly electronegative halogen gases to form an ionic product. They can also be synthesized as the product of a high temperature reaction between solids.

If the ionic compound is soluble in a solvent, it can be obtained as a solid compound by evaporating the solvent from this electrolyte solution. As the solvent is evaporated, the ions do not go into the vapor, but stay in the remaining solution, and when they become sufficiently concentrated, nucleation occurs, and they crystallize into an ionic compound. This process occurs widely in nature and is the means of formation of the evaporite minerals. Another method of recovering the compound from solution involves saturating a solution at high temperature and then reducing the solubility by reducing the temperature until the solution is supersaturated and the solid compound nucleates.

Insoluble ionic compounds can be precipitated by mixing two solutions, one with the cation and one with the anion in it. Because all solutions are electrically neutral, the two solutions mixed must also contain counterions of the opposite charges. To ensure that these do not contaminate the precipitated ionic compound, it is important to ensure they do not also precipitate. If the two solutions have hydrogen ions and hydroxide ions as the counterions, they will react with one another in what is called an acid–base reaction or a neutralization reaction to form water. Alternately the counterions can be chosen to ensure that even when combined into a single solution they will remain soluble as spectator ions.

If the solvent is water in either the evaporation or precipitation method of formation, in many cases the ionic crystal formed also includes water of crystallization, so the product is known as a hydrate, and can have very different chemical properties.

Molten salts will solidify on cooling to below their freezing point. This is sometimes used for the solid-state synthesis of complex ionic compounds from solid reactants, which are first melted together. In other cases, the solid reactants do not need to be melted, but instead can react through a solid-state reaction route. In this method, the reactants are repeatedly finely ground into a paste and then heated to a temperature where the ions in neighboring reactants can diffuse together during the time the reactant mixture remains in the oven. Other synthetic routes use a solid precursor with the correct stoichiometric ratio of non-volatile ions, which is heated to drive off other species.

In some reactions between highly reactive metals (usually from Group 1 or Group 2) and highly electronegative halogen gases, or water, the atoms can be ionized by electron transfer, a process thermodynamically understood using the Born–Haber cycle.

Bonding

A schematic electron shell diagram of sodium and fluorine atoms undergoing a redox reaction to form sodium fluoride. Sodium loses its outer electron to give it a stable electron configuration, and this electron enters the fluorine atom exothermically. The oppositely charged ions – typically a great many of them – are then attracted to each other to form a solid.
 

Ions in ionic compounds are primarily held together by the electrostatic forces between the charge distribution of these bodies, and in particular, the ionic bond resulting from the long-ranged Coulomb attraction between the net negative charge of the anions and net positive charge of the cations. There is also a small additional attractive force from van der Waals interactions which contributes only around 1–2% of the cohesive energy for small ions. When a pair of ions comes close enough for their outer electron shells (most simple ions have closed shells) to overlap, a short-ranged repulsive force occurs, due to the Pauli exclusion principle. The balance between these forces leads to a potential energy well with minimum energy when the nuclei are separated by a specific equilibrium distance.

If the electronic structure of the two interacting bodies is affected by the presence of one another, covalent interactions (non-ionic) also contribute to the overall energy of the compound formed. Ionic compounds are rarely purely ionic, i.e. held together only by electrostatic forces. The bonds between even the most electronegative/electropositive pairs such as those in caesium fluoride exhibit a small degree of covalency. Conversely, covalent bonds between unlike atoms often exhibit some charge separation and can be considered to have a partial ionic character. The circumstances under which a compound will have ionic or covalent character can typically be understood using Fajans' rules, which use only charges and the sizes of each ion. According to these rules, compounds with the most ionic character will have large positive ions with a low charge, bonded to a small negative ion with a high charge. More generally HSAB theory can be applied, whereby the compounds with the most ionic character are those consisting of hard acids and hard bases: small, highly charged ions with a high difference in electronegativities between the anion and cation. This difference in electronegativities means that the charge separation, and resulting dipole moment, is maintained even when the ions are in contact (the excess electrons on the anions are not transferred or polarized to neutralize the cations).

Structure

The unit cell of the zinc blende structure

Ions typically pack into extremely regular crystalline structures, in an arrangement that minimizes the lattice energy (maximizing attractions and minimizing repulsions). The lattice energy is the summation of the interaction of all sites with all other sites. For unpolarizable spherical ions, only the charges and distances are required to determine the electrostatic interaction energy. For any particular ideal crystal structure, all distances are geometrically related to the smallest internuclear distance. So for each possible crystal structure, the total electrostatic energy can be related to the electrostatic energy of unit charges at the nearest neighboring distance by a multiplicative constant called the Madelung constant that can be efficiently computed using an Ewald sum. When a reasonable form is assumed for the additional repulsive energy, the total lattice energy can be modelled using the Born–Landé equation, the Born–Mayer equation, or in the absence of structural information, the Kapustinskii equation.

Using an even simpler approximation of the ions as impenetrable hard spheres, the arrangement of anions in these systems are often related to close-packed arrangements of spheres, with the cations occupying tetrahedral or octahedral interstices. Depending on the stoichiometry of the ionic compound, and the coordination (principally determined by the radius ratio) of cations and anions, a variety of structures are commonly observed, and theoretically rationalized by Pauling's rules.

Some ionic liquids, particularly with mixtures of anions or cations, can be cooled rapidly enough that there is not enough time for crystal nucleation to occur, so an ionic glass is formed (with no long-range order).

Defects

Diagram of charged ions with a positive ion out of place in the structure
Frenkel defect
 
Diagram of charged ions with a positive and negative missing from the structure
Schottky defect
 

Within an ionic crystal, there will usually be some point defects, but to maintain electroneutrality, these defects come in pairs. Frenkel defects consist of a cation vacancy paired with a cation interstitial and can be generated anywhere in the bulk of the crystal, occurring most commonly in compounds with a low coordination number and cations that are much smaller than the anions. Schottky defects consist of one vacancy of each type, and are generated at the surfaces of a crystal, occurring most commonly in compounds with a high coordination number and when the anions and cations are of similar size. If the cations have multiple possible oxidation states, then it is possible for cation vacancies to compensate for electron deficiencies on cation sites with higher oxidation numbers, resulting in a non-stoichiometric compound. Another non-stoichiometric possibility is the formation of an F-center, a free electron occupying an anion vacancy. When the compound has three or more ionic components, even more defect types are possible. All of these point defects can be generated via thermal vibrations and have an equilibrium concentration. Because they are energetically costly but entropically beneficial, they occur in greater concentration at higher temperatures. Once generated, these pairs of defects can diffuse mostly independently of one another, by hopping between lattice sites. This defect mobility is the source of most transport phenomena within an ionic crystal, including diffusion and solid state ionic conductivity. When vacancies collide with interstitials (Frenkel), they can recombine and annihilate one another. Similarly, vacancies are removed when they reach the surface of the crystal (Schottky). Defects in the crystal structure generally expand the lattice parameters, reducing the overall density of the crystal. Defects also result in ions in distinctly different local environments, which causes them to experience a different crystal-field symmetry, especially in the case of different cations exchanging lattice sites. This results in a different splitting of d-electron orbitals, so that the optical absorption (and hence colour) can change with defect concentration.

Properties

Acidity/basicity

Ionic compounds containing hydrogen ions (H+) are classified as acids, and those containing electropositive cations and basic anions ions hydroxide (OH) or oxide (O2−) are classified as bases. Other ionic compounds are known as salts and can be formed by acid–base reactions. If the compound is the result of a reaction between a strong acid and a weak base, the result is an acidic salt. If it is the result of a reaction between a strong base and a weak acid, the result is a basic salt. If it is the result of a reaction between a strong acid and a strong base, the result is a neutral salt. Weak acids reacted with weak bases can produce ionic compounds with both the conjugate base ion and conjugate acid ion, such as ammonium acetate.

Some ions are classed as amphoteric, being able to react with either an acid or a base. This is also true of some compounds with ionic character, typically oxides or hydroxides of less-electropositive metals (so the compound also has significant covalent character), such as zinc oxide, aluminium hydroxide, aluminium oxide and lead(II) oxide.

Melting and boiling points

Electrostatic forces between particles are strongest when the charges are high, and the distance between the nuclei of the ions is small. In such cases, the compounds generally have very high melting and boiling points and a low vapour pressure. Trends in melting points can be even better explained when the structure and ionic size ratio is taken into account. Above their melting point ionic solids melt and become molten salts (although some ionic compounds such as aluminium chloride and iron(III) chloride show molecule-like structures in the liquid phase). Inorganic compounds with simple ions typically have small ions, and thus have high melting points, so are solids at room temperature. Some substances with larger ions, however, have a melting point below or near room temperature (often defined as up to 100 °C), and are termed ionic liquids. Ions in ionic liquids often have uneven charge distributions, or bulky substituents like hydrocarbon chains, which also play a role in determining the strength of the interactions and propensity to melt.

Even when the local structure and bonding of an ionic solid is disrupted sufficiently to melt it, there are still strong long-range electrostatic forces of attraction holding the liquid together and preventing ions boiling to form a gas phase. This means that even room temperature ionic liquids have low vapour pressures, and require substantially higher temperatures to boil. Boiling points exhibit similar trends to melting points in terms of the size of ions and strength of other interactions. When vapourized, the ions are still not freed of one another. For example, in the vapour phase sodium chloride exists as diatomic "molecules".

Brittleness

Most ionic compounds are very brittle. Once they reach the limit of their strength, they cannot deform malleably, because the strict alignment of positive and negative ions must be maintained. Instead the material undergoes fracture via cleavage. As the temperature is elevated (usually close to the melting point) a ductile–brittle transition occurs, and plastic flow becomes possible by the motion of dislocations.

Compressibility

The compressibility of an ionic compound is strongly determined by its structure, and in particular the coordination number. For example, halides with the caesium chloride structure (coordination number 8) are less compressible than those with the sodium chloride structure (coordination number 6), and less again than those with a coordination number of 4.

Solubility

When ionic compounds dissolve, the individual ions dissociate and are solvated by the solvent and dispersed throughout the resulting solution. Because the ions are released into solution when dissolved, and can conduct charge, soluble ionic compounds are the most common class of strong electrolytes, and their solutions have a high electrical conductivity.

The aqueous solubility of a variety of ionic compounds as a function of temperature. Some compounds exhibiting unusual solubility behavior have been included.

The solubility is highest in polar solvents (such as water) or ionic liquids, but tends to be low in nonpolar solvents (such as petrol/gasoline). This is principally because the resulting ion–dipole interactions are significantly stronger than ion-induced dipole interactions, so the heat of solution is higher. When the oppositely charged ions in the solid ionic lattice are surrounded by the opposite pole of a polar molecule, the solid ions are pulled out of the lattice and into the liquid. If the solvation energy exceeds the lattice energy, the negative net enthalpy change of solution provides a thermodynamic drive to remove ions from their positions in the crystal and dissolve in the liquid. In addition, the entropy change of solution is usually positive for most solid solutes like ionic compounds, which means that their solubility increases when the temperature increases. There are some unusual ionic compounds such as cerium(III) sulfate, where this entropy change is negative, due to extra order induced in the water upon solution, and the solubility decreases with temperature.

Electrical conductivity

Although ionic compounds contain charged atoms or clusters, these materials do not typically conduct electricity to any significant extent when the substance is solid. In order to conduct, the charged particles must be mobile rather than stationary in a crystal lattice. This is achieved to some degree at high temperatures when the defect concentration increases the ionic mobility and solid state ionic conductivity is observed. When the ionic compounds are dissolved in a liquid or are melted into a liquid, they can conduct electricity because the ions become completely mobile. This conductivity gain upon dissolving or melting is sometimes used as a defining characteristic of ionic compounds.

In some unusual ionic compounds: fast ion conductors, and ionic glasses, one or more of the ionic components has a significant mobility, allowing conductivity even while the material as a whole remains solid. This is often highly temperature dependent, and may be the result of either a phase change or a high defect concentration. These materials are used in all solid-state supercapacitors, batteries, and fuel cells, and in various kinds of chemical sensors.

Colour

a pile of red granules on white paper
Cobalt(II) chloride hexahydrate, CoCl2·6H2O
 

The colour of an ionic compound is often different from the colour of an aqueous solution containing the constituent ions, or the hydrated form of the same compound.

The anions in compounds with bonds with the most ionic character tend to be colorless (with an absorption band in the ultraviolet part of the spectrum). In compounds with less ionic character, their color deepens through yellow, orange, red, and black (as the absorption band shifts to longer wavelengths into the visible spectrum). 

The absorption band of simple cations shifts toward a shorter wavelength when they are involved in more covalent interactions. This occurs during hydration of metal ions, so colorless anhydrous ionic compounds with an anion absorbing in the infrared can become colorful in solution.

Uses

Ionic compounds have long had a wide variety of uses and applications. Many minerals are ionic. Humans have processed common salt (sodium chloride) for over 8000 years, using it first as a food seasoning and preservative, and now also in manufacturing, agriculture, water conditioning, for de-icing roads, and many other uses. Many ionic compounds are so widely used in society that they go by common names unrelated to their chemical identity. Examples of this include borax, calomel, milk of magnesia, muriatic acid, oil of vitriol, saltpeter, and slaked lime.

Soluble ionic compounds like salt can easily be dissolved to provide electrolyte solutions. This is a simple way to control the concentration and ionic strength. The concentration of solutes affects many colligative properties, including increasing the osmotic pressure, and causing freezing-point depression and boiling-point elevation. Because the solutes are charged ions they also increase the electrical conductivity of the solution. The increased ionic strength reduces the thickness of the electrical double layer around colloidal particles, and therefore the stability of emulsions and suspensions.

The chemical identity of the ions added is also important in many uses. For example, fluoride containing compounds are dissolved to supply fluoride ions for water fluoridation.

Solid ionic compounds have long been used as paint pigments, and are resistant to organic solvents, but are sensitive to acidity or basicity. Since 1801 pyrotechnicians have described and widely used metal-containing ionic compounds as sources of colour in fireworks. Under intense heat, the electrons in the metal ions or small molecules can be excited. These electrons later return to lower energy states, and release light with a colour spectrum characteristic of the species present.

In chemistry, ionic compounds are often used as precursors for high-temperature solid-state synthesis.

Many metals are geologically most abundant as ionic compounds within ores. To obtain the elemental materials, these ores are processed by smelting or electrolysis, in which redox reactions occur (often with a reducing agent such as carbon) such that the metal ions gain electrons to become neutral atoms.

Nomenclature

According to the nomenclature recommended by IUPAC, ionic compounds are named according to their composition, not their structure. In the most simple case of a binary ionic compound with no possible ambiguity about the charges and thus the stoichiometry, the common name is written using two words. The name of the cation (the unmodified element name for monatomic cations) comes first, followed by the name of the anion. For example, MgCl2 is named magnesium chloride, and Na2SO4 is named sodium sulfate (SO2−
4
, sulfate, is an example of a polyatomic ion). To obtain the empirical formula from these names, the stoichiometry can be deduced from the charges on the ions, and the requirement of overall charge neutrality.

If there are multiple different cations and/or anions, multiplicative prefixes (di-, tri-, tetra-, ...) are often required to indicate the relative compositions, and cations then anions are listed in alphabetical order. For example, KMgCl3 is named magnesium potassium trichloride to distinguish it from K2MgCl4, magnesium dipotassium tetrachloride (note that in both the empirical formula and the written name, the cations appear in alphabetical order, but the order varies between them because the symbol for potassium is K). When one of the ions already has a multiplicative prefix within its name, the alternate multiplicative prefixes (bis-, tris-, tetrakis-, ...) are used. For example, Ba(BrF4)2 is named barium bis(tetrafluoridobromate).

Compounds containing one or more elements which can exist in a variety of charge/oxidation states will have a stoichiometry that depends on which oxidation states are present, to ensure overall neutrality. This can be indicated in the name by specifying either the oxidation state of the elements present, or the charge on the ions. Because of the risk of ambiguity in allocating oxidation states, IUPAC prefers direct indication of the ionic charge numbers. These are written as an arabic integer followed by the sign (... , 2−, 1−, 1+, 2+, ...) in parentheses directly after the name of the cation (without a space separating them). For example, FeSO4 is named iron(2+) sulfate (with the 2+ charge on the Fe2+ ions balancing the 2− charge on the sulfate ion), whereas Fe2(SO4)3 is named iron(3+) sulfate (because the two iron ions in each formula unit each have a charge of 3+, to balance the 2− on each of the three sulfate ions). Stock nomenclature, still in common use, writes the oxidation number in Roman numerals (... , −II, −I, 0, I, II, ...). So the examples given above would be named iron(II) sulfate and iron(III) sulfate respectively. For simple ions the ionic charge and the oxidation number are identical, but for polyatomic ions they often differ. For example, the uranyl(2+) ion, UO2+
2
, has uranium in an oxidation state of +6, so would be called a dioxouranium(VI) ion in Stock nomenclature. An even older naming system for metal cations, also still widely used, appended the suffixes -ous and -ic to the Latin root of the name, to give special names for the low and high oxidation states. For example, this scheme uses "ferrous" and "ferric", for iron(II) and iron(III) respectively, so the examples given above were classically named ferrous sulfate and ferric sulfate.

Gel electrophoresis of nucleic acids

Digital printout of an agarose gel electrophoresis of cat-insert plasmid DNA
 
DNA electropherogram trace

Nucleic acid electrophoresis is an analytical technique used to separate DNA or RNA fragments by size and reactivity. Nucleic acid molecules which are to be analyzed are set upon a viscous medium, the gel, where an electric field induces the nucleic acids (which are negatively charged due to their sugar-phosphate backbone) to migrate toward the anode (which is positively charged because this is an electrolytic rather than galvanic cell). The separation of these fragments is accomplished by exploiting the mobilities with which different sized molecules are able to pass through the gel. Longer molecules migrate more slowly because they experience more resistance within the gel. Because the size of the molecule affects its mobility, smaller fragments end up nearer to the anode than longer ones in a given period. After some time, the voltage is removed and the fragmentation gradient is analyzed. For larger separations between similar sized fragments, either the voltage or run time can be increased. Extended runs across a low voltage gel yield the most accurate resolution. Voltage is, however, not the sole factor in determining electrophoresis of nucleic acids.

The nucleic acid to be separated can be prepared in several ways before separation by electrophoresis. In the case of large DNA molecules, the DNA is frequently cut into smaller fragments using a DNA restriction endonuclease (or restriction enzyme). In other instances, such as PCR amplified samples, enzymes present in the sample that might affect the separation of the molecules are removed through various means before analysis. Once the nucleic acid is properly prepared, the samples of the nucleic acid solution are placed in the wells of the gel and a voltage is applied across the gel for a specified amount of time.

The DNA fragments of different lengths are visualized using a fluorescent dye specific for DNA, such as ethidium bromide. The gel shows bands corresponding to different nucleic acid molecules populations with different molecular weight. Fragment size is usually reported in "nucleotides", "base pairs" or "kb" (for thousands of base pairs) depending upon whether single- or double-stranded nucleic acid has been separated. Fragment size determination is typically done by comparison to commercially available DNA markers containing linear DNA fragments of known length.

The types of gel most commonly used for nucleic acid electrophoresis are agarose (for relatively long DNA molecules) and polyacrylamide (for high resolution of short DNA molecules, for example in DNA sequencing). Gels have conventionally been run in a "slab" format such as that shown in the figure, but capillary electrophoresis has become important for applications such as high-throughput DNA sequencing. Electrophoresis techniques used in the assessment of DNA damage include alkaline gel electrophoresis and pulsed field gel electrophoresis.

For short DNA segments such as 20 to 60 bp double stranded DNA, running them in polyacrylamide gel (PAGE) will give better resolution (native condition). Similarly, RNA and single-stranded DNA can be run and visualised by PAGE gels containing denaturing agents such as urea. PAGE gels are widely used in techniques such as DNA foot printing, EMSA and other DNA-protein interaction techniques.

The measurement and analysis are mostly done with a specialized gel analysis software. Capillary electrophoresis results are typically displayed in a trace view called an electropherogram.

Factors affecting migration of nucleic acids

A number of factors can affect the migration of nucleic acids: the dimension of the gel pores, the voltage used, the ionic strength of the buffer, and the concentration intercalating dye such as ethidium bromide if used during electrophoresis.

Size of DNA

The gel sieves the DNA by the size of the DNA molecule whereby smaller molecules travel faster. Double-stranded DNA moves at a rate that is approximately inversely proportional to the logarithm of the number of base pairs. This relationship however breaks down with very large DNA fragments and it is not possible to separate them using standard agarose gel electrophoresis. The limit of resolution depends on gel composition and field strength. and the mobility of larger circular DNA may be more strongly affected than linear DNA by the pore size of the gel. Separation of very large DNA fragments requires pulse field gel electrophoresis (PFGE). In field inversion gel electrophoresis (FIGE, a kind of PFGE), it is possible to have "band inversion" - where large molecules may move faster than small molecules.

Gels of plasmid preparations usually show a major band of supercoiled DNA with other fainter bands in the same lane. Note that by convention DNA gel is displayed with smaller DNA fragments near the bottom of the gel. This is because historically DNA gel were run vertically and the smaller DNA fragments move downwards faster.

Conformation of DNA

The conformation of the DNA molecule can significantly affect the movement of the DNA, for example, supercoiled DNA usually moves faster than relaxed DNA because it is tightly coiled and hence more compact. In a normal plasmid DNA preparation, multiple forms of DNA may be present, and gel from the electrophoresis of the plasmids would normally show a main band which would be the negatively supercoiled form, while other forms of DNA may appear as minor fainter bands. These minor bands may be nicked DNA (open circular form) and the relaxed closed circular form which normally run slower than supercoiled DNA, and the single-stranded form (which can sometimes appear depending on the preparation methods) may move ahead of the supercoiled DNA. The rate at which the various forms move however can change using different electrophoresis conditions, for example linear DNA may run faster or slower than supercoiled DNA depending on conditions, and the mobility of larger circular DNA may be more strongly affected than linear DNA by the pore size of the gel. Unless supercoiled DNA markers are used, the size of a circular DNA like plasmid therefore may be more accurately gauged after it has been linearized by restriction digest.

DNA damage due to increased cross-linking will also reduce electrophoretic DNA migration in a dose-dependent way.

Concentration of ethidium bromide

Circular DNA are more strongly affected by ethidium bromide concentration than linear DNA if ethidium bromide is present in the gel during electrophoresis. All naturally occurring DNA circles are underwound, but ethidium bromide which intercalates into circular DNA can change the charge, length, as well as the superhelicity of the DNA molecule, therefore its presence during electrophoresis can affect its movement in gel. Increasing ethidium bromide intercalated into the DNA can change it from a negatively supercoiled molecule into a fully relaxed form, then to positively coiled superhelix at maximum intercalation. Agarose gel electrophoresis can be used to resolve circular DNA with different supercoiling topology.

Gel concentration

The concentration of the gel determines the pore size of the gel which affects the migration of DNA. The resolution of the DNA changes with the percentage concentration of the gel. Increasing the agarose concentration of a gel reduces the migration speed and improves separation of smaller DNA molecules, while lowering gel concentration permits large DNA molecules to be separated. For a standard agarose gel electrophoresis, 0.7% gel concentration gives good separation or resolution of large 5–10kb DNA fragments, while 2% gel concentration gives good resolution for small 0.2–1kb fragments. Up to 3% gel concentration can be used for separating very tiny fragments but a vertical polyacrylamide gel would be more appropriate for resolving small fragments. High concentrations gel, however, requires longer run times (sometimes days) and high percentage gels are often brittle and may not set evenly. High percentage agarose gels should be run with PFGE or FIGE. Low percentage gels (0.1−0.2%) are fragile and may break. 1% gels are common for many applications.

Applied field

At low voltages, the rate of migration of the DNA is proportional to the voltage applied, i.e. the higher the voltage, the faster the DNA moves. However, in increasing electric field strength, the mobility of high-molecular-weight DNA fragments increases differentially, and the effective range of separation decreases and resolution therefore is lower at high voltage. For optimal resolution of DNA greater than 2kb in size in standard gel electrophoresis, 5 to 8 V/cm is recommended. Voltage is also limited by the fact that it heats the gel and may cause the gel to melt if a gel is run at high voltage for a prolonged period, particularly for low-melting point agarose gel.

The mobility of DNA however may change in an unsteady field. In a field that is periodically reversed, the mobility of DNA of a particular size may drop significantly at a particular cycling frequency. This phenomenon can result in band inversion whereby larger DNA fragments move faster than smaller ones in PFGE.

Mechanism of migration and separation

The negative charge of its phosphate backbone moves the DNA towards the positively charged anode during electrophoresis. However, the migration of DNA molecules in solution, in the absence of a gel matrix, is independent of molecular weight during electrophoresis, i.e. there is no separation by size without a gel matrix. Hydrodynamic interaction between different parts of the DNA are cut off by streaming counterions moving in the opposite direction, so no mechanism exists to generate a dependence of velocity on length on a scale larger than screening length of about 10 nm. This makes it different from other processes such as sedimentation or diffusion where long-ranged hydrodynamic interaction are important.

The gel matrix is therefore responsible for the separation of DNA by size during electrophoresis, however the precise mechanism responsible the separation is not entirely clear. A number of models exists for the mechanism of separation of biomolecules in gel matrix, a widely accepted one is the Ogston model which treats the polymer matrix as a sieve consisting of randomly distributed network of inter-connected pores. A globular protein or a random coil DNA moves through the connected pores large enough to accommodate its passage, and the movement of larger molecules is more likely to be impeded and slowed down by collisions with the gel matrix, and the molecules of different sizes can therefore be separated in this process of sieving.

The Ogston model however breaks down for large molecules whereby the pores are significantly smaller than size of the molecule. For DNA molecules of size greater than 1 kb, a reptation model (or its variants) is most commonly used. This model assumes that the DNA can crawl in a "snake-like" fashion (hence "reptation") through the pores as an elongated molecule. At higher electric field strength, this turned into a biased reptation model, whereby the leading end of the molecule become strongly biased in the forward direction, and this leading edge pulls the rest of the molecule along. In the fully biased mode, the mobility reached a saturation point and DNA beyond a certain size cannot be separated. Perfect parallel alignment of the chain with the field however is not observed in practice as that would mean the same mobility for long and short molecules. Further refinement of the biased reptation model takes into account of the internal fluctuations of the chain.

The biased reptation model has also been used to explain the mobility of DNA in PFGE. The orientation of the DNA is progressively built up by reptation after the onset of a field, and the time it reached the steady state velocity is dependent on the size of the molecule. When the field is changed, larger molecules take longer to reorientate, it is therefore possible to discriminate between the long chains that cannot reach its steady state velocity from the short ones that travel most of the time in steady velocity. Other models, however, also exist.

Real-time fluorescence microscopy of stained molecules showed more subtle dynamics during electrophoresis, with the DNA showing considerable elasticity as it alternately stretching in the direction of the applied field and then contracting into a ball, or becoming hooked into a U-shape when it gets caught on the polymer fibres. This observation may be termed the "caterpillar" model. Other model proposes that the DNA gets entangled with the polymer matrix, and the larger the molecule, the more likely it is to become entangled and its movement impeded.

Visualization

DNA gel electrophoresis

The most common dye used to make DNA or RNA bands visible for agarose gel electrophoresis is ethidium bromide, usually abbreviated as EtBr. It fluoresces under UV light when intercalated into the major groove of DNA (or RNA). By running DNA through an EtBr-treated gel and visualizing it with UV light, any band containing more than ~20 ng DNA becomes distinctly visible. EtBr is a known mutagen, and safer alternatives are available, such as GelRed, produced by Biotium, which binds to the minor groove.

SYBR Green I is another dsDNA stain, produced by Invitrogen. It is more expensive, but 25 times more sensitive, and possibly safer than EtBr, though there is no data addressing its mutagenicity or toxicity in humans.

SYBR Safe is a variant of SYBR Green that has been shown to have low enough levels of mutagenicity and toxicity to be deemed nonhazardous waste under U.S. Federal regulations. It has similar sensitivity levels to EtBr, but, like SYBR Green, is significantly more expensive. In countries where safe disposal of hazardous waste is mandatory, the costs of EtBr disposal can easily outstrip the initial price difference, however.

Since EtBr stained DNA is not visible in natural light, scientists mix DNA with negatively charged loading buffers before adding the mixture to the gel. Loading buffers are useful because they are visible in natural light (as opposed to UV light for EtBr stained DNA), and they co-sediment with DNA (meaning they move at the same speed as DNA of a certain length). Xylene cyanol and Bromophenol blue are common dyes found in loading buffers; they run about the same speed as DNA fragments that are 5000 bp and 300 bp in length respectively, but the precise position varies with percentage of the gel. Other less frequently used progress markers are Cresol Red and Orange G which run at about 125 bp and 50 bp, respectively.

Visualization can also be achieved by transferring DNA after SDS-PAGE to a nitrocellulose membrane followed by exposure to a hybridization probe. This process is termed Southern blotting.

For fluorescent dyes, after electrophoresis the gel is illuminated with an ultraviolet lamp (usually by placing it on a light box, while using protective gear to limit exposure to ultraviolet radiation). The illuminator apparatus mostly also contains imaging apparatus that takes an image of the gel, after illumination with UV radiation. The ethidium bromide fluoresces reddish-orange in the presence of DNA, since it has intercalated with the DNA. The DNA band can also be cut out of the gel, and can then be dissolved to retrieve the purified DNA. The gel can then be photographed usually with a digital or polaroid camera. Although the stained nucleic acid fluoresces reddish-orange, images are usually shown in black and white (see figures). UV damage to the DNA sample can reduce the efficiency of subsequent manipulation of the sample, such as ligation and cloning. Shorter wavelength UV radiations (302 or 312 nm) cause greater damage, for example exposure for as little as 45 seconds can significantly reduce transformation efficiency. Therefore if the DNA is to be use for downstream procedures, exposure to a shorter wavelength UV radiations should be limited, instead higher-wavelength UV radiation (365 nm) which cause less damage should be used. Higher wavelength radiations however produces weaker fluorescence, therefore if it is necessary to capture the gel image, a shorter wavelength UV light can be used a short time. Addition of Cytidine or guanosine to the electrophoresis buffer at 1 mM concentration may protect the DNA from damage. Alternatively, a blue light excitation source with a blue-excitable stain such as SYBR Green or GelGreen may be used.

Gel electrophoresis research often takes advantage of software-based image analysis tools, such as ImageJ.

Aboriginal Australians

From Wikipedia, the free encyclopedia
Aboriginal Australians
Australian Aboriginal Flag.svg
Total population
984,000 (2021)
3.8% of Australia's population
Regions with significant populations
 Northern Territory30.3%
 Tasmania5.5%
 Queensland4.6%
 Western Australia3.9%
 New South Wales3.4%
 South Australia2.5%
 Australian Capital Territory1.9%
 Victoria0.9%
Languages
Several hundred Australian Aboriginal languages, many no longer spoken, Australian English, Australian Aboriginal English, Kriol
Religion
Majority Christian (mainly Anglican and Catholic), minority no religious affiliation, and small numbers of other religions, various local indigenous religions grounded in Australian Aboriginal mythology
Related ethnic groups
Torres Strait Islanders, Aboriginal Tasmanians, Papuans

Aboriginal dwellings in Hermannsburg, Northern Territory, 1923. Image: Herbert Basedow

Aboriginal Australians are the various First Nations peoples of the Australian mainland and many of its islands, such as the peoples of Tasmania, Fraser Island, Hinchinbrook Island, the Tiwi Islands and Groote Eylandt, but excluding the ethnically distinct Torres Strait Islands. The term Indigenous Australians refers to Aboriginal Australians and Torres Strait Islanders collectively.

Aboriginal people comprise many distinct peoples who developed across Australia for 65,000-plus years. These peoples have a broadly shared, though complex, genetic history, but only in the last 200 years have been defined and started to self-identify as a single group. Aboriginal identity has changed over time and place, with family lineage, self-identification and community acceptance all of varying importance.

Each group of Aboriginal peoples lived on and maintained its own country and developed sophisticated trade networks, inter-cultural relationships, law and religions.

Aboriginal people have a wide variety of cultural practices and beliefs that make up the oldest continuous cultures in the world, and have a strong connection to their country. At the time of European colonisation of Australia, they consisted of complex cultural societies with hundreds of languages and varying degrees of technology and settlements.

Contemporary Aboriginal beliefs are a complex mixture, varying by region and individual across the continent. They are shaped by traditional beliefs, the disruption of colonisation, religions brought to the continent by Europeans, and contemporary issues. Traditional cultural beliefs are passed down and shared by dancing, stories, songlines and art that collectively weave an ontology of modern daily life and ancient creation known as Dreaming.

In the past, Aboriginal people lived over large sections of the continental shelf and were isolated on many of the smaller offshore islands and Tasmania when the land was inundated at the start of the Holocene inter-glacial period, about 11,700 years ago. Despite this, Aboriginal people maintained extensive networks within the continent and certain groups maintained relationships with Torres Strait Islanders and the Makassar people of modern-day Indonesia. Studies of Aboriginal groups' genetic makeup are ongoing, but evidence suggests that they have genetic inheritance from ancient Asian but not more modern peoples, and share some similarities with Papuans, but have been isolated from Southeast Asia for a very long time. Before extensive European colonisation, there were over 250 Aboriginal languages.

In the 2021 Australian Census, Indigenous Australians comprised 3.8% of Australia's population.

Most Aboriginal people today speak English and live in cities, and some may use Aboriginal phrases and words in Australian Aboriginal English (which also has a tangible influence of Aboriginal languages in the phonology and grammatical structure). Many but not all also speak traditional languages.

Aboriginal people, along with Torres Strait Islander people, have a number of severe health and economic deprivations in comparison with the wider Australian community.

Origins

Aboriginal dancers in 1981
 
Arnhem Land artist Glen Namundja painting at Injalak Arts
 
Didgeridoo player Ŋalkan Munuŋgurr performing with East Journey

The ancestors of present-day Aboriginal Australian people migrated from Southeast Asia by sea during the Pleistocene epoch and lived over large sections of the Australian continental shelf when the sea levels were lower and Australia, Tasmania and New Guinea were part of the same landmass, known as Sahul. As sea levels rose, the people on the Australian mainland and nearby islands became increasingly isolated, some on Tasmania and some of the smaller offshore islands when the land was inundated at the start of the Holocene, the inter-glacial period that started about 11,700 years ago. Prehistorians believe it would have been difficult for Aboriginal people to have originated purely from mainland Asia, and not enough numbers would have made it to Australia and surrounding islands to fulfil the beginning of the population seen in the last century. This is why it is commonly believed that most Aboriginal Australians originated from Southeast Asia, and if this is the case, Aboriginal Australians were among the first in the world to complete sea voyages.

A 2017 paper in Nature evaluated artefacts in Kakadu and concluded "Human occupation began around 65,000 years ago".

A 2021 study by researchers at the Australian Research Council Centre of Excellence for Australian Biodiversity and Heritage has mapped the likely migration routes of the peoples as they moved across the Australian continent to its southern reaches of what is now Tasmania, then part of the mainland. The modelling is based on data from archaeologists, anthropologists, ecologists, geneticists, climatologists, geomorphologists and hydrologists, and it is intended to compare the modelling with the oral histories of Aboriginal peoples, including Dreaming stories, Australian rock art and linguistic features of the many Aboriginal languages. The routes, dubbed "superhighways" by the authors, are similar to current highways and stock routes in Australia. Lynette Russell of Monash University sees the new model as a starting point for collaboration with Aboriginal people to help uncover their history. The new models suggest that the first people may have landed in the Kimberley region in what is now Western Australia about 60,000 years ago, and settled across the continent within 6,000 years. A 2018 study using archaeobotany dated evidence of continuous human habitation at Karnatukul (Serpent's Glen) in the Carnarvon Range in the Little Sandy Desert in WA from around 50,000 years ago.

Genetics

Phylogenetic position of the Aboriginal Australian lineage among other East Eurasians.

Genetic studies have revealed that Aboriginal Australians largely descended from an Eastern Eurasian population wave, and are most closely related to other Oceanians, such as Melanesians. The Aboriginal Australians also show affinity to other Australasian populations, such as Negritos or indigenous South Asian groups, such as the Andamanese people, as well as to East Asian peoples. Phylogenetic data suggests that an early initial eastern lineage (ENA) trifurcated somewhere in South Asia, and gave rise to Australasians (Oceanians), indigenous South Asians/Andamanese, and the East/Southeast Asian lineage including ancestors of the Native Americans, although Papuans may have received approximately 2% of their geneflow from an earlier group (xOOA) as well, next to additional archaic admixture in the Sahul region.

PCA of Orang Asli (Semang) and Andamanese, with worldwide populations in HGDP.
 
Noongar traditional dancers, Perth, Australia

Aboriginal people are genetically most similar to the indigenous populations of Papua New Guinea, and more distantly related to groups from East Indonesia. They are more distinct from the indigenous populations of Borneo and Malaysia, sharing drift with them than compared to the groups from Papua New Guinea and Indonesia. This indicates that populations in Australia were isolated for a long time from the rest of Southeast Asia, and remained untouched by migrations and population expansions into that area, which can be explained by the Wallace line.

In a 2001 study, blood samples were collected from some Warlpiri people in the Northern Territory to study their genetic makeup (which is not representative of all Aboriginal peoples in Australia). The study concluded that the Warlpiri are descended from ancient Asians whose DNA is still somewhat present in Southeastern Asian groups, although greatly diminished. The Warlpiri DNA lacks certain information found in modern Asian genomes, and carries information not found in other genomes, reinforcing the idea of ancient Aboriginal isolation.

Genetic data extracted in 2011 by Morten Rasmussen et al., who took a DNA sample from an early-20th-century lock of an Aboriginal person's hair, found that the Aboriginal ancestors probably migrated through South Asia and Maritime Southeast Asia, into Australia, where they stayed, with the result that, outside of Africa, the Aboriginal peoples have occupied the same territory continuously longer than any other human populations. These findings suggest that modern Aboriginal Australians are the direct descendants of the eastern wave, who left Africa up to 75,000 years ago. This finding is compatible with earlier archaeological finds of human remains near Lake Mungo that date to approximately 40,000 years ago. The idea of the "oldest continuous culture" is based on the Aboriginal peoples' geographical isolation, with little or no interaction with outside cultures before some contact with Makassan fishermen and Dutch explorers up to 500 years ago.

The Rasmussen study also found evidence that Aboriginal peoples carry some genes associated with the Denisovans (a species of human related to but distinct from Neanderthals) of Asia; the study suggests that there is an increase in allele sharing between the Denisovan and Aboriginal Australian genomes, compared to other Eurasians or Africans. Examining DNA from a finger bone excavated in Siberia, researchers concluded that the Denisovans migrated from Siberia to tropical parts of Asia and that they interbred with modern humans in Southeast Asia 44,000 years BP, before Australia separated from New Guinea approximately 11,700 years BP. They contributed DNA to Aboriginal Australians along with present-day New Guineans and an indigenous tribe in the Philippines known as Mamanwa. This study makes Aboriginal Australians one of the oldest living populations in the world and possibly the oldest outside Africa, confirming they may also have the oldest continuous culture on the planet.

A 2016 study at the University of Cambridge by Christopher Klein et al. suggests that it was about 50,000 years ago that these peoples reached Sahul (the supercontinent consisting of present-day Australia and its islands and New Guinea). The sea levels rose and isolated Australia (and Tasmania) about 10,000 years ago, but Aboriginal Australians and Papuans diverged from each other genetically earlier, about 37,000 years BP, possibly because the remaining land bridge was impassable, and it was this isolation which makes it the world's oldest culture. The study also found evidence of an unknown hominin group, distantly related to Denisovans, with whom the Aboriginal and Papuan ancestors must have interbred, leaving a trace of about 4% in most Aboriginal Australians' genome. There is, however, increased genetic diversity among Aboriginal Australians based on geographical distribution.

The initial human settlement of Oceania is estimated to be between 60 and 40 kya. The archaeogenetic results indicate a colonisation of Australia (southern Sahul) before 37 kya and an incubation period in northern Sahul (Papua New Guinea) followed by westward expansions within Australia after ~28 kya. Principal component analysis of ancient and present-day individuals from Eurasian populations.

Carlhoff et al. 2021 analyzed a Holocene hunter-gatherer sample ("Leang Panninge") from South Sulawesi, which shares high amounts of genetic drift with Aboriginal Australians and Papuans, which suggests to represent a population which split from the common ancestor of Aboriginal Australians and Papuans. The sample also shows genetic affinity for East Asians and Andamanese people of South Asia. The authors note that this hunter-gatherer sample can be modeled with ~50% Papuan-related ancestry and either with ~50% East Asian or Andamanese Onge ancestry, highlighting the deep split between Leang Panninge and Aboriginal/Papuans.

Two genetic studies by Larena et al. 2021 found that Philippines Negrito people split from the common ancestor of Aboriginal Australians and Papuans before they diverged from each other, but after their common ancestor diverged from the ancestor of East Asian peoples.

Changes around 4,000 years ago

The dingo reached Australia about 4,000 years ago, and around the same time there were changes in language (with the Pama-Nyungan language family spreading over most of the mainland), and in stone tool technology, with the use of smaller tools. Human contact has thus been inferred, and genetic data of two kinds have been proposed to support a gene flow from India to Australia: firstly, signs of South Asian components in Aboriginal Australian genomes, reported on the basis of genome-wide SNP data; and secondly, the existence of a Y chromosome (male) lineage, designated haplogroup C∗, with the most recent common ancestor around 5,000 years ago. The first type of evidence comes from a 2013 study by the Max Planck Institute for Evolutionary Anthropology using large-scale genotyping data from a pool of Aboriginal Australians, New Guineans, island Southeast Asians and Indians. It found that the New Guinea and Mamanwa (Philippines area) groups diverged from the Aboriginal about 36,000 years ago (and supporting evidence that these populations are descended from migrants taking an early "southern route" out of Africa, before other groups in the area), and also that the Indian and Australian populations mixed well before European contact, with this gene flow occurring during the Holocene (c. 4,200 years ago). The researchers had two theories for this: either some Indians had contact with people in Indonesia who eventually transferred those Indian genes to Aboriginal Australians, or that a group of Indians migrated all the way from India to Australia and intermingled with the locals directly.

However, a 2016 study in Current Biology by Anders Bergström et al. excluded the Y chromosome as providing evidence for recent gene flow from India into Australia. The study authors sequenced 13 Aboriginal Australian Y chromosomes using recent advances in gene sequencing technology, investigating their divergence times from Y chromosomes in other continents, including comparing the haplogroup C chromosomes. They found a divergence time of about 54,100 years between the Sahul C chromosome and its closest relative C5, as well as about 54,300 years between haplogroups K*/M and their closest haplogroups R and Q. The deep divergence time of 50,000-plus years with the South Asian chromosome and "the fact that the Aboriginal Australian Cs share a more recent common ancestor with Papuan Cs" excludes any recent genetic contact.

The 2016 study's authors concluded that, although this does not disprove the presence of any Holocene gene flow or non-genetic influences from South Asia at that time, and the appearance of the dingo does provide strong evidence for external contacts, the evidence overall is consistent with a complete lack of gene flow, and points to indigenous origins for the technological and linguistic changes. They attributed the disparity between their results and previous findings to improvements in technology; none of the other studies had utilised complete Y chromosome sequencing, which has the highest precision. For example, use of a ten Y STRs method has been shown to massively underestimate divergence times. Gene flow across the island-dotted 150-kilometre-wide (93 mi) Torres Strait, is both geographically plausible and demonstrated by the data, although at this point it could not be determined from this study when within the last 10,000 years it may have occurred—newer analytical techniques have the potential to address such questions.

Bergstrom's 2018 doctoral thesis looking at the population of Sahul suggests that other than relatively recent admixture, the populations of the region appear to have been genetically independent from the rest of the world since their divergence about 50,000 years ago. He writes "There is no evidence for South Asian gene flow to Australia .... Despite Sahul being a single connected landmass until [8,000 years ago], different groups across Australia are nearly equally related to Papuans, and vice versa, and the two appear to have separated genetically already [about 30,000 years ago]".

Environmental adaptations

Aboriginal Australians possess inherited abilities to stand a wide range of environmental temperatures in various ways. A study in 1958 comparing cold adaptation in the desert-dwelling Pitjantjatjara people compared with a group of European people showed that the cooling adaptation of the Aboriginal group differed from that of the white people, and that they were able to sleep more soundly through a cold desert night. A 2014 Cambridge University study found that a beneficial mutation in two genes which regulate thyroxine, a hormone involved in regulating body metabolism, helps to regulate body temperature in response to fever. The effect of this is that the desert people are able to have a higher body temperature without accelerating the activity of the whole of the body, which can be especially detrimental in childhood diseases. This helps protect people to survive the side-effects of infection.

An Aboriginal encampment near the Adelaide foothills in an 1854 painting by Alexander Schramm

Location and demographics

Aboriginal people have lived for tens of thousands of years on the continent of Australia, through its various changes in landmass. The area within Australia's borders today includes the islands of Tasmania, Fraser Island, Hinchinbrook Island, the Tiwi Islands and Groote Eylandt. Indigenous people of the Torres Strait Islands, however, are not Aboriginal.

In the 2016 Australian census, Indigenous Australians comprised 3.3% of Australia's population, with 91% of these identifying as Aboriginal only, 5% Torres Strait Islander, and 4% both.

Aboriginal people also live throughout the world as part of the Australian diaspora.

Languages

Most Aboriginal people speak English, with Aboriginal phrases and words being added to create Australian Aboriginal English (which also has a tangible influence of Aboriginal languages in the phonology and grammatical structure). Some Aboriginal people, especially those living in remote areas, are multi-lingual. Many of the original 250–400 Aboriginal languages (more than 250 languages and about 800 dialectal varieties on the continent) are endangered or extinct, although some efforts are being made at language revival for some. As of 2016, only 13 traditional Indigenous languages were still being acquired by children, and about another 100 spoken by older generations only.

Aboriginal Australian peoples

Clockwise from upper left: traditional lands Victoria, Tasmania, Darwin, Cairns

Dispersing across the Australian continent over time, the ancient people expanded and differentiated into distinct groups, each with its own language and culture. More than 400 distinct Australian Aboriginal peoples have been identified, distinguished by names designating their ancestral languages, dialects, or distinctive speech patterns. According to noted anthropologist, archaeologist and sociologist Harry Lourandos, historically, these groups lived in three main cultural areas, the Northern, Southern and Central cultural areas. The Northern and Southern areas, having richer natural marine and woodland resources, were more densely populated than the Central area.

Men from Bathurst Island, 1939

Geographically-based names

There are various other names from Australian Aboriginal languages commonly used to identify groups based on geography, known as demonyms, including:

A few examples of sub-groups

Other group names are based on the language group or specific dialect spoken. These also coincide with geographical regions of varying sizes. A few examples are:

Difficulties defining groups

However, these lists are neither exhaustive nor definitive, and there are overlaps. Different approaches have been taken by non-Aboriginal scholars in trying to understand and define Aboriginal culture and societies, some focusing on the micro-level (tribe, clan, etc.), and others on shared languages and cultural practices spread over large regions defined by ecological factors. Anthropologists have encountered many difficulties in trying to define what constitutes an Aboriginal people/community/group/tribe, let alone naming them. Knowledge of pre-colonial Aboriginal cultures and societal groupings is still largely dependent on the observers' interpretations, which were filtered through colonial ways of viewing societies.

Some Aboriginal peoples identify as one of several saltwater, freshwater, rainforest or desert peoples.

Aboriginal identity

The term Aboriginal Australians includes many distinct peoples who have developed across Australia for over 50,000 years. These peoples have a broadly shared, though complex, genetic history, but it is only in the last two hundred years that they have been defined and started to self-identify as a single group, socio-politically. While some preferred the term Aborigine to Aboriginal in the past, as the latter was seen to have more directly discriminatory legal origins, use of the term Aborigine has declined in recent decades, as many consider the term an offensive and racist hangover from Australia's colonial era.

The definition of the term Aboriginal has changed over time and place, with the importance of family lineage, self-identification and community acceptance all being of varying importance.

The term Indigenous Australians refers to Aboriginal Australians as well as Torres Strait Islander peoples, and the term is conventionally only used when both groups are included in the topic being addressed, or by self-identification by a person as Indigenous. (Torres Strait Islanders are ethnically and culturally distinct, despite extensive cultural exchange with some of the Aboriginal groups, and the Torres Strait Islands are mostly part of Queensland but have a separate governmental status.) Some Aboriginal people object to being labelled Indigenous, as an artificial and denialist term.

Culture and beliefs

Australian Indigenous people have beliefs unique to each mob (tribe) and have a strong connection to the land. Contemporary Indigenous Australian beliefs are a complex mixture, varying by region and individual across the continent. They are shaped by traditional beliefs, the disruption of colonisation, religions brought to the continent by Europeans, and contemporary issues. Traditional cultural beliefs are passed down and shared by dancing, stories, songlines and art—especially Papunya Tula (dot painting)—collectively telling the story of creation known as The Dreamtime. Additionally, traditional healers were also custodians of important Dreaming stories as well as their medical roles (for example the Ngangkari in the Western desert). Some core structures and themes are shared across the continent with details and additional elements varying between language and cultural groups. For example, in The Dreamtime of most regions, a spirit creates the earth then tells the humans to treat the animals and the earth in a way which is respectful to land. In Northern Territory this is commonly said to be a huge snake or snakes that weaved its way through the earth and sky making the mountains and oceans. But in other places the spirits who created the world are known as wandjina rain and water spirits. Major ancestral spirits include the Rainbow Serpent, Baiame, Dirawong and Bunjil. Similarly, the Arrernte people of central Australia believed that humanity originated from great superhuman ancestors who brought the sun, wind and rain as a result of breaking through the surface of the Earth when waking from their slumber.

Health and disadvantage

Aboriginal Australians, along with Torres Strait Islander people, have a number of health and economic deprivations in comparison with the wider Australian community.

Due to the aforementioned disadvantage, Aboriginal Australian communities experience a higher rate of suicide, as compared to non-indigenous communities. These issues stem from a variety of different causes unique to indigenous communities, such as historical trauma, socioeconomic disadvantage, and decreased access to education and health care. Also, this problem largely affects indigenous youth, as many indigenous youth may feel disconnected from their culture.

To combat the increased suicide rate, many researchers have suggested that the inclusion of more cultural aspects into suicide prevention programs would help to combat mental health issues within the community. Past studies have found that many indigenous leaders and community members, do in fact, want more culturally-aware health care programs. Similarly, culturally-relative programs targeting indigenous youth have actively challenged suicide ideation among younger indigenous populations, with many social and emotional wellbeing programs using cultural information to provide coping mechanisms and improving mental health.

Viability of remote communities

Historical image of Aboriginal Australian women and children, Maloga, New South Wales around 1900 (in European dress)

The outstation movement of the 1970s and 1980s, when Aboriginal people moved to tiny remote settlements on traditional land, brought health benefits, but funding them proved expensive, training and employment opportunities were not provided in many cases, and support from governments dwindled in the 2000s, particularly in the era of the Howard government.

Indigenous communities in remote Australia are often small, isolated towns with basic facilities, on traditionally owned land. These communities have between 20 and 300 inhabitants and are often closed to outsiders for cultural reasons. The long-term viability and resilience of Aboriginal communities in desert areas has been discussed by scholars and policy-makers. A 2007 report by the CSIRO stressed the importance of taking a demand-driven approach to services in desert settlements, and concluded that "if top-down solutions continue to be imposed without appreciating the fundamental drivers of settlement in desert regions, then those solutions will continue to be partial, and ineffective in the long term".

Crime of apartheid

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