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Wednesday, August 6, 2014

GMO tobacco ‘mystery serum’ rescues Ebola virus victims

GMO tobacco ‘mystery serum’ rescues Ebola virus victims

| August 6, 2014 |

Genetic modification—biotechnology vilified in some quarters as a violation of nature–has proved key in saving the lives of two Americans infected by the deadly Ebola virus.

When American Ebola patient Dr. Kent Brantly arrived in Atlanta, Georgia, Aug. 2, he had reportedly already had one course of treatment with an experimental drug called ZMAPP made with genetically engineered tobacco. Although it has only been tested previously in animals, the FDA is rumored to have authorized emergency approval for the drug for Brantly and another American who contracted the virus doing medical aid work in Liberia during the ongoing West African Ebola outbreak.

MAPP is produced by a small San Diego-based biotech company. The scientists use a common tobacco bacteria, genetically engineered with different components of the Ebola virus, to infect a large number of plants. The infection spurs the plants to make antibodies to the virus, including the pieces of viral Ebola DNA. The tobacco is then crushed up and the ebola serum is extracted. It contains antibodies that target several parts of the virus.

“What you want is a cocktail of antibodies that target different domains on the virus so escape is less likely in treatment,” said Heinz Feldmenn, chief of the National Institute of Allergy and Infectious Diseases’ Laboratory of Virology in Hamilton, Montana. Growing the genetically modified plants and refining the serum takes just five weeks, Lexington Herald-Leader reported. Kentucky company Kentucky BioProcessing contracts with MAPP to grow and refine the tobacco plants and is involved in studies targeting other infectious disease:
KBP also has been selected for work on some of the biggest health threats on the planet, including H1N1 vaccine production, an anti-rabies antibody, norovirus or the “cruise ship virus,” HIV prevention, parvovirus, and HPV vaccine.
Tobacco is a good organism to produce genetically engineered drugs because its relatively easy to infect the plants with altered bacteria, the plants’ immune systems react well and the plants are easy to grow in a relatively short time frame. Neither MAPP founders nor the FDA have publicly commented on the release of ZMAPP to the two  American Ebola patients, nor have they discussed accelerating testing of the drug to respond to the latest outbreak. Before its release in this case, the drug was undergoing testing on non-human primates.

Some have questioned the ethics of giving the serum to just the two Americans when more than a thousand Africans have contracted the virus:
While potentially saving lives, the cases raise questions about who should have the right to receive experimental drugs years before they gain FDA approval. “There are a lot of Africans that are also dying,” Robert Garry, a virologist at Tulane University, said in a telephone interview. “If we are going to do it for the Americans then we should certainly step up our game for the Africans.”
And as David Kroll pointed out Forbes, we don’t yet know if ZMAPP had any treatment affect for Brantly or if he was recovering from the infection on his own.

Additional Resources:

Carbon dioxide

Carbon dioxide

From Wikipedia, the free encyclopedia
 
Carbon dioxide
Structural formula of carbon dioxide with bond length
Ball-and-stick model of carbon dioxideSpace-filling model of carbon dioxide
Identifiers
CAS number124-38-9 YesY
PubChem280
ChemSpider274 YesY
UNII142M471B3J YesY
EC number204-696-9
UN number1013
KEGGD00004 YesY
MeSHCarbon+dioxide
ChEBICHEBI:16526 YesY
ChEMBLCHEMBL1231871 N
RTECS numberFF6400000
ATC codeV03AN02
Beilstein Reference1900390
Gmelin Reference989
3DMetB01131
Jmol-3D imagesImage 1
Image 2
Properties
Molecular formulaCO2
Molar mass44.01 g mol−1
AppearanceColorless gas
OdorOdorless
Density1562 kg/m3 (solid at 1 atm and −78.5 °C)
770 kg/m3 (liquid at 56 atm and 20 °C)
1.977 kg/m3 (gas at 1 atm and 0 °C)
Melting point−56.6 °C; −69.8 °F; 216.6 K (Triple point at 5.1 atm)
Sublimation conditions−78.5 °C; −109.2 °F; 194.7 K (1 atm)
Solubility in water1.45 g/L at 25 °C, 100 kPa
Vapor pressure5.73 MPa (20 °C)
Acidity (pKa)6.35, 10.33
Refractive index (nD)1.1120
Viscosity0.07 cP at −78.5 °C
Dipole moment0 D
Structure
Crystal structuretrigonal
Molecular shapelinear
Thermochemistry
Specific
heat capacity
C
37.135 J/K mol
Std molar
entropy
So298
214 J·mol−1·K−1
Std enthalpy of
formation
ΔfHo298
−393.5 kJ·mol−1
Hazards
MSDSExternal MSDS
NFPA 704
Flammability code 0: Will not burn. E.g., water Health code 1: Exposure would cause irritation but only minor residual injury. E.g., turpentine Reactivity code 0: Normally stable, even under fire exposure conditions, and is not reactive with water. E.g., liquid nitrogen Special hazards (white): no codeNFPA 704 four-colored diamond
0
1
0
Related compounds
Other anionsCarbon disulfide
Carbon diselenide
Other cationsSilicon dioxide
Germanium dioxide
Tin dioxide
Lead dioxide
Related carbon oxidesCarbon monoxide
Carbon suboxide
Dicarbon monoxide
Carbon trioxide
Related compoundsCarbonic acid
Carbonyl sulfide
Supplementary data page
Structure and
properties
n, εr, etc.
Thermodynamic
data
Phase behaviour
Solid, liquid, gas
Spectral dataUV, IR, NMR, MS
Except where noted otherwise, data are given for materials in their standard state (at 25 °C (77 °F), 100 kPa)
 N (verify) (what is: YesY/N?)
Infobox references
Carbon dioxide (chemical formula CO2) is a naturally-occurring chemical compound composed of 2 oxygen atoms each covalently double bonded to a single carbon atom. It is a gas at standard temperature and pressure and exists in Earth's atmosphere in this state, as a trace gas at a concentration of 0.04 per cent (400 ppm) by volume, as of 2014.[1]

As part of the carbon cycle, plants, algae, and cyanobacteria use light energy to photosynthesize carbohydrate from carbon dioxide and water, with oxygen produced as a waste product.[2] However, photosynthesis cannot occur in darkness and at night some carbon dioxide is produced by plants during respiration.[3] It is produced during the respiration of all other aerobic organisms and is exhaled in the breath of air-breathing land animals, including humans. Carbon dioxide is produced during the processes of decay of organic materials and the fermentation of sugars in beer and winemaking. It is produced by combustion of wood, carbohydrates and major carbon- and hydrocarbon-rich fossil fuels such as coal, peat, petroleum and natural gas. It is emitted from volcanoes, hot springs and geysers and is freed from carbonate rocks by dissolution in water and acids. CO2 is found in lakes, at depth under the sea and commingled with oil and gas deposits.[4]

The environmental effects of carbon dioxide are of significant interest. Atmospheric carbon dioxide is the primary source of carbon in life on Earth and its concentration in Earth's pre-industrial atmosphere since late in the Precambrian eon was regulated by photosynthetic organisms. Carbon dioxide is an important greenhouse gas and burning of carbon-based fuels since the industrial revolution has rapidly increased its concentration in the atmosphere, leading to global warming. It is also a major source of ocean acidification since it dissolves in water to form carbonic acid.[5]

Chemical and physical properties

Structure and bonding

The carbon dioxide molecule is linear and centrosymmetric. The two C=O bonds are equivalent and are short (116.3 pm), consistent with double bonding.[10] Since it is centrosymmetric, the molecule has no electrical dipole. Consistent with this fact, only two vibrational bands are observed in the IR spectrum – an antisymmetric stretching mode at 2349 cm−1 and a bending mode near 666 cm−1. There is also a symmetric stretching mode at 1388 cm−1 which is only observed in the Raman spectrum.
Co2comp.png

In aqueous solution

Carbon dioxide is soluble in water, in which it reversibly forms H
2
CO
3
(carbonic acid), which is a weak acid since its ionization in water is incomplete.
CO
2
+ H
2
O
is in equilibrium with H
2
CO
3
The hydration equilibrium constant of carbonic acid is K_{\mathrm h}=\frac{\rm{[H_2CO_3]}}{\rm{[CO_2(aq)]}}=1.70\times 10^{-3} (at 25 °C). Hence, the majority of the carbon dioxide is not converted into carbonic acid, but remains as CO2 molecules not affecting the pH.

The relative concentrations of CO
2
, H
2
CO
3
, and the deprotonated forms HCO
3
(bicarbonate) and CO2−
3
(carbonate) depend on the pH. As shown in a Bjerrum plot, in neutral or slightly alkaline water (pH > 6.5), the bicarbonate form predominates (>50%) becoming the most prevalent (>95%) at the pH of seawater. In very alkaline water (pH > 10.4), the predominant (>50%) form is carbonate. The oceans, being mildly alkaline with typical pH = 8.2–8.5, contain about 120 mg of bicarbonate per liter.

Being diprotic, carbonic acid has two acid dissociation constants, the first one for the dissociation into the bicarbonate (also called hydrogen carbonate) ion (HCO3):
H2CO3 is in equilibrium with HCO3 + H+
Ka1 = 2.5×10−4 mol/litre; pKa1 = 3.6 at 25 °C.[10]
This is the true first acid dissociation constant, defined as K_{a1}=\frac{\rm{[HCO_3^-] [H^+]}}{\rm{[H_2CO_3]}}, where the denominator includes only covalently bound H2CO3 and excludes hydrated CO2(aq). The much smaller and often-quoted value near 4.16×10−7 is an apparent value calculated on the (incorrect) assumption that all dissolved CO2 is present as carbonic acid, so that K_{\mathrm{a1}}{\rm{(apparent)}}=\frac{\rm{[HCO_3^-] [H^+]}}{\rm{[H_2CO_3] + [CO_2(aq)]}}. Since most of the dissolved CO2 remains as CO2 molecules, Ka1(apparent) has a much larger denominator and a much smaller value than the true Ka1.[11]

The bicarbonate ion is an amphoteric species that can act as an acid or as a base, depending on pH of the solution. At high pH, it dissociates significantly into the carbonate ion (CO32−):
HCO3 is in equilibrium with CO32− + H+
Ka2 = 4.69×10−11 mol/litre; pKa2 = 10.329
In organisms carbonic acid production is catalysed by the enzyme, carbonic anhydrase.

Chemical reactions of CO2

CO2 is a weak electrophile. Its reaction with basic water illustrates this property, in which case hydroxide is the nucleophile. Other nucleophiles react as well. For example, carbanions as provided by Grignard reagents and organolithium compounds react with CO2 to give carboxylates:
MR + CO2 → RCO2M
where M = Li or MgBr and R = alkyl or aryl.
In metal carbon dioxide complexes, CO2 serves as a ligand, which can facilitate the conversion of CO2 to other chemicals.[12]

The reduction of CO2 to CO is ordinarily a difficult and slow reaction:
CO2 + 2 e + 2H+ → CO + H2O
The redox potential for this reaction near pH 7 is about −0.53 V versus the standard hydrogen electrode. The nickel-containing enzyme carbon monoxide dehydrogenase catalyses this process.[13]

Physical properties

 
Carbon dioxide pressure-temperature phase diagram showing the triple point and critical point of carbon dioxide
Sample of solid carbon dioxide or "dry ice" pellets

Carbon dioxide is colorless. At low concentrations, the gas is odorless. At higher concentrations it has a sharp, acidic odor. At standard temperature and pressure, the density of carbon dioxide is around 1.98 kg/m3, about 1.67 times that of air.

Carbon dioxide has no liquid state at pressures below 5.1 standard atmospheres (520 kPa). At 1 atmosphere (near mean sea level pressure), the gas deposits directly to a solid at temperatures below −78.5 °C (−109.3 °F; 194.7 K) and the solid sublimes directly to a gas above −78.5 °C. In its solid state, carbon dioxide is commonly called dry ice.

Liquid carbon dioxide forms only at pressures above 5.1 atm; the triple point of carbon dioxide is about 518 kPa at −56.6 °C (see phase diagram, above). The critical point is 7.38 MPa at 31.1 °C.[14] Another form of solid carbon dioxide observed at high pressure is an amorphous glass-like solid.[15] This form of glass, called carbonia, is produced by supercooling heated CO2 at extreme pressure (40–48 GPa or about 400,000 atmospheres) in a diamond anvil. This discovery confirmed the theory that carbon dioxide could exist in a glass state similar to other members of its elemental family, like silicon (silica glass) and germanium dioxide. Unlike silica and germania glasses, however, carbonia glass is not stable at normal pressures and reverts to gas when pressure is released.

At temperatures and pressures above the critical point, carbon dioxide behaves as a supercritical fluid known as supercritical carbon dioxide.

Isolation and production

Carbon dioxide is mainly produced as an unrecovered side product of four technologies: combustion of fossil fuels, production of hydrogen by steam reforming, ammonia synthesis, and fermentation. It can be obtained by distillation from air, but this method is inefficient.

The combustion of all carbon-containing fuels, such as methane (natural gas), petroleum distillates (gasoline, diesel, kerosene, propane), coal and wood produces carbon dioxide and, in most cases, water. As an example the chemical reaction between methane and oxygen is given below.
CH
4
+ 2 O
2
→ CO
2
+ 2 H
2
O
Quicklime (CaO), a compound that has many industrial uses, is produced by driving off CO
2
from limestone by heating (calcining) at about 850 °C:
CaCO
3
→ CaO + CO
2
Iron is reduced from its oxides with coke in a blast furnace, producing pig iron and carbon dioxide:[16]
Fe
2
O
3
+ 3 CO → 2 Fe + 3 CO
2
Yeast metabolizes sugar to produce carbon dioxide and ethanol, also known as alcohol, in the production of wines, beers and other spirits, but also in the production of bioethanol:
C
6
H
12
O
6
2 CO
2
+ 2 C
2
H
5
OH
All aerobic organisms produce CO
2
when they oxidize carbohydrates, fatty acids, and proteins in the mitochondria of cells. The large number of reactions involved are exceedingly complex and not described easily. Refer to (cellular respiration, anaerobic respiration and photosynthesis). The equation for the respiration of glucose and other monosaccharides is:
C
6
H
12
O
6
+ 6 O
2
6 CO
2
+ 6 H
2
O
Photoautotrophs (i.e. plants and cyanobacteria) use the energy contained in sunlight to photosynthesize simple sugars from CO
2
absorbed from the air and water:
nCO2 + nH
2
O → (CH
2
O
)n + nO
2

Laboratory methods

A variety of chemical routes to carbon dioxide are known, such as the reaction between most acids and most metal carbonates. For example, the reaction between hydrochloric acid and calcium carbonate (limestone or chalk) is depicted below:
2 HCl+ CaCO
3
→ CaCl
2
+ H
2
CO
3
The carbonic acid (H2CO3) then decomposes to water and CO2. Such reactions are accompanied by foaming or bubbling, or both. In industry such reactions are widespread because they can be used to neutralize waste acid streams.

Industrial production

Industrial carbon dioxide can be produced by several methods, many of which are practiced at various scales.[17] In its dominant route, carbon dioxide is produced as a side product of the industrial production of ammonia and hydrogen. These processes begin with the reaction of water and natural gas (mainly methane).[18]

Although carbon dioxide is not often recovered, carbon dioxide results from combustion of fossil fuels and wood as well fermentation of sugar in the brewing of beer, whisky and other alcoholic beverages. It also results from thermal decomposition of limestone, CaCO
3
, in the manufacture of lime (calcium oxide, CaO). It may be obtained directly from natural carbon dioxide springs, where it is produced by the action of acidified water on limestone or dolomite.

Uses

Carbon dioxide bubbles in a soft drink.

Carbon dioxide is used by the food industry, the oil industry, and the chemical industry.[17]

Precursor to chemicals[edit]

In the chemical industry, carbon dioxide is mainly consumed as an ingredient in the production of urea and methanol.[citation needed] Metal carbonates and bicarbonates, as well as some carboxylic acids derivatives (e.g., sodium salicylate) are prepared using CO2.[citation needed]

Foods

Carbon dioxide is a food additive used as a propellant and acidity regulator in the food industry. It is approved for usage in the EU[19] (listed as E number E290), USA[20] and Australia and New Zealand[21] (listed by its INS number 290).

A candy called Pop Rocks is pressurized with carbon dioxide gas at about 4 x 106 Pa (40 bar, 580 psi). When placed in the mouth, it dissolves (just like other hard candy) and releases the gas bubbles with an audible pop.

Leavening agents cause dough to rise by producing carbon dioxide. Baker's yeast produces carbon dioxide by fermentation of sugars within the dough, while chemical leaveners such as baking powder and baking soda release carbon dioxide when heated or if exposed to acids.

Beverages

Carbon dioxide is used to produce carbonated soft drinks and soda water. Traditionally, the carbonation in beer and sparkling wine came about through natural fermentation, but many manufacturers carbonate these drinks with carbon dioxide recovered from the fermentation process. In the case of bottled and kegged beer, the most common method used is carbonation with recycled carbon dioxide. With the exception of British Real Ale, draught beer is usually transferred from kegs in a cold room or cellar to dispensing taps on the bar using pressurized carbon dioxide, sometimes mixed with nitrogen.

Wine making

Carbon dioxide in the form of dry ice is often used in the wine making process to cool down bunches of grapes quickly after picking to help prevent spontaneous fermentation by wild yeast. The main advantage of using dry ice over regular water ice is that it cools the grapes without adding any additional water that may decrease the sugar concentration in the grape must, and therefore also decrease the alcohol concentration in the finished wine.

Dry ice is also used during the cold soak phase of the wine making process to keep grapes cool. The carbon dioxide gas that results from the sublimation of the dry ice tends to settle to the bottom of tanks because it is denser than air. The settled carbon dioxide gas creates a hypoxic environment which helps to prevent bacteria from growing on the grapes until it is time to start the fermentation with the desired strain of yeast.

Carbon dioxide is also used to create a hypoxic environment for carbonic maceration, the process used to produce Beaujolais wine.

Carbon dioxide is sometimes used to top up wine bottles or other storage vessels such as barrels to prevent oxidation, though it has the problem that it can dissolve into the wine, making a previously still wine slightly fizzy. For this reason, other gases such as nitrogen or argon are preferred for this process by professional wine makers.

Inert gas

It is one of the most commonly used compressed gases for pneumatic (pressurized gas) systems in portable pressure tools. Carbon dioxide is also used as an atmosphere for welding, although in the welding arc, it reacts to oxidize most metals. Use in the automotive industry is common despite significant evidence that welds made in carbon dioxide are more brittle than those made in more inert atmospheres, and that such weld joints deteriorate over time because of the formation of carbonic acid. It is used as a welding gas primarily because it is much less expensive than more inert gases such as argon or helium. When used for MIG welding, CO2 use is sometimes referred to as MAG welding, for Metal Active Gas, as CO2 can react at these high temperatures. It tends to produce a hotter puddle than truly inert atmospheres, improving the flow characteristics. Although, this may be due to atmospheric reactions occurring at the puddle site. This is usually the opposite of the desired effect when welding, as it tends to embrittle the site, but may not be a problem for general mild steel welding, where ultimate ductility is not a major concern.

It is used in many consumer products that require pressurized gas because it is inexpensive and nonflammable, and because it undergoes a phase transition from gas to liquid at room temperature at an attainable pressure of approximately 60 bar (870 psi, 59 atm), allowing far more carbon dioxide to fit in a given container than otherwise would. Life jackets often contain canisters of pressured carbon dioxide for quick inflation. Aluminium capsules of CO2 are also sold as supplies of compressed gas for airguns, paintball markers, inflating bicycle tires, and for making carbonated water. Rapid vaporization of liquid carbon dioxide is used for blasting in coal mines. High concentrations of carbon dioxide can also be used to kill pests. Liquid carbon dioxide is used in supercritical drying of some food products and technological materials, in the preparation of specimens for scanning electron microscopy and in the decaffeination of coffee beans.

Fire extinguisher

Carbon dioxide extinguishes flames, and some fire extinguishers, especially those designed for electrical fires, contain liquid carbon dioxide under pressure. Carbon dioxide extinguishers work well on small flammable liquid and electrical fires, but not on ordinary combustible fires, because although it excludes oxygen, it does not cool the burning substances significantly and when the carbon dioxide disperses they are free to catch fire upon exposure to atmospheric oxygen. Carbon dioxide has also been widely used as an extinguishing agent in fixed fire protection systems for local application of specific hazards and total flooding of a protected space.[22] International Maritime
Organization standards also recognize carbon dioxide systems for fire protection of ship holds and engine rooms. Carbon dioxide based fire protection systems have been linked to several deaths, because it can cause suffocation in sufficiently high concentrations. A review of CO2 systems identified 51 incidents between 1975 and the date of the report, causing 72 deaths and 145 injuries.[23]

Supercritical CO2 as solvent

Liquid carbon dioxide is a good solvent for many lipophilic organic compounds and is used to remove caffeine from coffee. Carbon dioxide has attracted attention in the pharmaceutical and other chemical processing industries as a less toxic alternative to more traditional solvents such as organochlorides. It is used by some dry cleaners for this reason (see green chemistry).

Agricultural and biological applications

Plants require carbon dioxide to conduct photosynthesis. Greenhouses may (if of large size, must) enrich their atmospheres with additional CO2 to sustain and increase plant growth.[24][25] A photosynthesis-related drop (by a factor less than two) in carbon dioxide concentration in a greenhouse compartment would kill green plants, or, at least, completely stop their growth. At very high concentrations (100 times atmospheric concentration, or greater), carbon dioxide can be toxic to animal life, so raising the concentration to 10,000 ppm (1%) or higher for several hours will eliminate pests such as whiteflies and spider mites in a greenhouse.[26] Carbon dioxide is used in greenhouses as the main carbon source for Spirulina algae.[citation needed]

In medicine, up to 5% carbon dioxide (130 times atmospheric concentration) is added to oxygen for stimulation of breathing after apnea and to stabilize the O
2
/CO
2
balance in blood.
It has been proposed that carbon dioxide from power generation be bubbled into ponds to grow algae that could then be converted into biodiesel fuel.[27]

Oil recovery

Carbon dioxide is used in enhanced oil recovery where it is injected into or adjacent to producing oil wells, usually under supercritical conditions, when it becomes miscible with the oil. This approach can increase original oil recovery by reducing residual oil saturation by between 7 per cent to 23 per cent additional to primary extraction.[28] It acts as both a pressurizing agent and, when dissolved into the underground crude oil, significantly reduces its viscosity, and changing surface chemistry enabling the oil to flow more rapidly through the reservoir to the removal well.[29] In mature oil fields, extensive pipe networks are used to carry the carbon dioxide to the injection points.

Bio transformation into fuel

Researchers have genetically modified a strain of the cyanobacterium Synechococcus elongatus to produce the fuels isobutyraldehyde and isobutanol from CO
2
using photosynthesis.[30]

Refrigerant

Comparison of phase diagrams of carbon dioxide (red) and water (blue) as a log-lin chart with phase transitions points at 1 atmosphere

Liquid and solid carbon dioxide are important refrigerants, especially in the food industry, where they are employed during the transportation and storage of ice cream and other frozen foods. Solid carbon dioxide is called "dry ice" and is used for small shipments where refrigeration equipment is not practical. Solid carbon dioxide is always below −78.5 °C at regular atmospheric pressure, regardless of the air temperature.

Liquid carbon dioxide (industry nomenclature R744 or R-744) was used as a refrigerant prior to the discovery of R-12 and may enjoy a renaissance due to the fact that R134a contributes to climate change. Its physical properties are highly favorable for cooling, refrigeration, and heating purposes, having a high volumetric cooling capacity. Due to its operation at pressures of up to 130 bar (1880 psi), CO2 systems require highly resistant components that have already been developed for mass production in many sectors. In automobile air conditioning, in more than 90% of all driving conditions for latitudes higher than 50°, R744 operates more efficiently than systems using R134a. Its environmental advantages (GWP of 1, non-ozone depleting, non-toxic, non-flammable) could make it the future working fluid to replace current HFCs in cars, supermarkets, hot water heat pumps, among others. Coca-Cola has fielded CO2-based beverage coolers and the U.S. Army is interested in CO2 refrigeration and heating technology.[31][32]

The global automobile industry is expected to decide on the next-generation refrigerant in car air conditioning. CO2 is one discussed option.(see Sustainable automotive air conditioning)

Coal bed methane recovery

In enhanced coal bed methane recovery, carbon dioxide would be pumped into the coal seam to displace methane, as opposed to current methods which primarily use water to make the coal seam release its trapped methane.[33]

Niche uses


Carbon dioxide is so inexpensive and so innocuous, that it finds many small uses that represent what might be called niche uses. For example it is used in the carbon dioxide laser, which is one of the earliest type of lasers.

Carbon dioxide can be used as a means of controlling the pH of swimming pools, by continuously adding gas to the water, thus keeping the pH level from rising. Among the advantages of this is the avoidance of handling (more hazardous) acids. Similarly, it is also used in the maintaining reef aquaria, where it is commonly used in calcium reactors to temporarily lower the pH of water being passed over calcium carbonate in order to allow the calcium carbonate to dissolve into the water more freely where it is used by some corals to build their skeleton. It is also used as the primary coolant in advanced gas-cooled reactors in the nuclear power generation industry.

Carbon dioxide induction is commonly used for the euthanasia of laboratory research animals. Methods to administer CO2 include placing animals directly into a closed, prefilled chamber containing CO2, or exposure to a gradually increasing concentration of CO2. In 2013, the American Veterinary Medical Association issued new guidelines for carbon dioxide induction, stating that a flow rate of 10% to 30% volume/min is optimal for the humane euthanization of small rodents.[34]

In the Earth's atmosphere

 
The Keeling Curve of atmospheric CO2 concentrations measured at Mauna Loa Observatory.

Carbon dioxide in Earth's atmosphere is considered a trace gas currently occurring at an average concentration of about 400 parts per million by volume[1] (or 591 parts per million by mass). The total mass of atmospheric carbon dioxide is 3.16×1015 kg (about 3,000 gigatonnes).[citation needed] Its concentration varies seasonally (see graph at right) and also considerably on a regional basis, especially near the ground. In urban areas concentrations are generally higher and indoors they can reach 10 times background levels. Carbon dioxide is a greenhouse gas.
Yearly increase of atmospheric CO2: In the 1960s, the average annual increase was 37% of the 2000–2007 average.[35]

As of March 2014, carbon dioxide in the Earth's atmosphere is at a concentration of approximately 400 ppm by volume.[1] Atmospheric concentrations of carbon dioxide fluctuate slightly with the change of the seasons, driven primarily by seasonal plant growth in the Northern Hemisphere. Concentrations of carbon dioxide fall during the northern spring and summer as plants consume the gas, and rise during the northern autumn and winter as plants go dormant, die and decay. Taking all this into account, the concentration of CO2 grew by about 2 ppm in 2009.[36] "The main cause of the current global warming trend is human expansion of the "greenhouse effect" warming that results when the atmosphere traps heat radiating from Earth toward space."[37] Carbon dioxide is a greenhouse gas as it is transparent to incoming visible light from the sun, but absorbs outgoing infrared radiation from the ground at its two infrared-active vibrational frequencies (see Structure and bonding above). As for all gases, the absorbed energy can be redistributed by molecular collisions which heat the atmosphere.[38]

Before the advent of release of carbon dioxide to the atmosphere by humans, concentrations tended to increase with increasing global temperatures, acting as a positive feedback for changes induced by other processes such as orbital cycles.[39] There is a seasonal cycle in CO2 concentration associated primarily with the Northern Hemisphere growing season.[40]

Five hundred million years ago carbon dioxide was 20 times more prevalent than today, decreasing to 4–5 times during the Jurassic period and then slowly declining with a particularly swift reduction occurring 49 million years ago.[41][42] Human activities such as the combustion of fossil fuels and deforestation have caused the atmospheric concentration of carbon dioxide to increase by about 35% since the beginning of the age of industrialization.[43]

Up to 40% of the gas emitted by some volcanoes during subaerial eruptions is carbon dioxide.[44] It is estimated that volcanoes release about 130–230 million tonnes (145–255 million short tons) of CO2 into the atmosphere each year. Carbon dioxide is also produced by hot springs such as those at the Bossoleto site near Rapolano Terme in Tuscany, Italy. Here, in a bowl-shaped depression of about 100 m diameter, local concentrations of CO2 rise to above 75% overnight, sufficient to kill insects and small animals, but it warms rapidly when sunlit and the gas is dispersed by convection during the day.[45] Locally high concentrations of CO2, produced by disturbance of deep lake water saturated with CO2 are thought to have caused 37 fatalities at Lake Monoun, Cameroon in 1984 and 1700 casualties at Lake Nyos, Cameroon in 1986.[46] Emissions of CO2 by human activities are estimated to be 135 times greater than the quantity emitted by volcanoes.[47]

The cement industry is one of the three primary producers of carbon dioxide along with the energy production and transportation industries. As of 2011 concrete contributes 7% to global anthropogenic CO2 emissions.[48]

In the oceans

Carbon dioxide dissolves in the ocean to form carbonic acid (H2CO3), bicarbonate (HCO3) and carbonate (CO32−), and there is about fifty times as much carbon dissolved in the sea water of the oceans as exists in the atmosphere. The oceans act as an enormous carbon sink, and have taken up about a third of CO2 emitted by human activity.[49]

As the concentration of carbon dioxide increases in the atmosphere, the increased uptake of carbon dioxide into the oceans is causing a measurable decrease in the pH of the oceans which is referred to as ocean acidification. Although the natural absorption of CO
2
by the world's oceans helps mitigate the climatic effects of anthropogenic emissions of CO
2
, it also results in a decrease in the pH of the oceans. This reduction in pH impacts the biological systems in the oceans, primarily oceanic calcifying organisms. These impacts span the food chain from autotrophs to heterotrophs and include organisms such as coccolithophores, corals, foraminifera, echinoderms, crustaceans and molluscs.
Under normal conditions, calcite and aragonite are stable in surface waters since the carbonate ion is at supersaturating concentrations. However, as ocean pH falls, so does the concentration of this ion, and when carbonate becomes undersaturated, structures made of calcium carbonate are vulnerable to dissolution. Even if there is no change in the rate of calcification, therefore, the rate of dissolution of calcareous material increases.[50]

Corals,[51][52][53] coccolithophore algae,[54][55][56][57] coralline algae,[58] foraminifera,[59] shellfish[60] and pteropods[61] experience reduced calcification or enhanced dissolution when exposed to elevated CO
2
.

Gas solubility decreases as the temperature of water increases (except when both pressure exceeds 300 bar and temperature exceeds 393 K, only found near deep geothermal vents)[62] and therefore the rate of uptake from the atmosphere decreases as ocean temperatures rise.

Most of the CO2 taken up by the ocean, which is about 30% of the total released into the atmosphere,[63] forms carbonic acid in equilibrium with bicarbonate. Some of these chemical species are consumed by photosynthetic organisms, that remove carbon from the cycle. Increased CO2 in the atmosphere has led to decreasing alkalinity of seawater, and there is concern that this may adversely affect organisms living in the water. In particular, with decreasing alkalinity, the availability of carbonates for forming shells decreases,[64] although there's evidence of increased shell production by certain species under increased CO2 content.[65]

NOAA states in their May 2008 "State of the science fact sheet for ocean acidification" that:
"The oceans have absorbed about 50% of the carbon dioxide (CO2) released from the burning of fossil fuels, resulting in chemical reactions that lower ocean pH. This has caused an increase in hydrogen ion (acidity) of about 30% since the start of the industrial age through a process known as "ocean acidification." A growing number of studies have demonstrated adverse impacts on marine organisms, including:
  • The rate at which reef-building corals produce their skeletons decreases, while production of numerous varieties of jellyfish increases.
  • The ability of marine algae and free-swimming zooplankton to maintain protective shells is reduced.
  • The survival of larval marine species, including commercial fish and shellfish, is reduced."
Also, the Intergovernmental Panel on Climate Change (IPCC) writes in their Climate Change 2007: Synthesis Report:[66]

"The uptake of anthropogenic carbon since 1750 has led to the ocean becoming more acidic with an average decrease in pH of 0.1 units. Increasing atmospheric CO2 concentrations lead to further acidification ... While the effects of observed ocean acidification on the marine biosphere are as yet undocumented, the progressive acidification of oceans is expected to have negative impacts on marine shell-forming organisms (e.g. corals) and their dependent species."

Some marine calcifying organisms (including coral reefs) have been singled out by major research agencies, including NOAA, OSPAR commission, NANOOS and the IPCC, because their most current research shows that ocean acidification should be expected to impact them negatively.[67]

Carbon dioxide is also introduced into the oceans through hydrothermal vents. The Champagne hydrothermal vent, found at the Northwest Eifuku volcano at Marianas Trench Marine National Monument, produces almost pure liquid carbon dioxide, one of only two known sites in the world.[68]
Sea urchins have been discovered to be able to convert carbon dioxide into raw material for their shells.[69]

Biological role

Carbon dioxide is an end product of cellular respiration in organisms that obtain energy by breaking down sugars, fats and amino acids with oxygen as part of their metabolism. This includes all plants, algae and animals and aerobic fungi and bacteria. In vertebrates, the carbon dioxide travels in the blood from the body's tissues to the skin (e.g., amphibians) or the gills (e.g., fish), from where it dissolves in the water, or to the lungs from where it is exhaled. During active photosynthesis, plants can absorb more carbon dioxide from the atmosphere than they use in respiration.

Photosynthesis and carbon fixation

Overview of photosynthesis and respiration. Carbon dioxide (at right), together with water, form oxygen and organic compounds (at left) by photosynthesis, which can be respired to water and (CO2).
Figure 2. Overview of the Calvin cycle and carbon fixation

Carbon fixation is a biochemical process by which atmospheric carbon dioxide is incorporated by plants, algae and (cyanobacteria) into energy-rich organic molecules such as glucose, thus creating their own food by photosynthesis. Photosynthesis uses carbon dioxide and water to produce sugars from which other organic compounds can be constructed, and oxygen is produced as a by-product.
Ribulose-1,5-bisphosphate carboxylase oxygenase, commonly abbreviated to RuBisCO, is the enzyme involved in the first major step of carbon fixation, the production of two molecules of 3-phosphoglycerate from CO
2
and ribulose bisphosphate, as shown in the diagram at left.
RuBisCo is thought to be the single most abundant protein on Earth.[70]

Phototrophs use the products of their photosynthesis as internal food sources and as raw material for the biosynthesis of more complex organic molecules, such as polysaccharides, nucleic acids and proteins. These are used for their own growth, and also as the basis of the food chains and webs that feed other organisms, including animals such as ourselves. Some important phototrophs, the coccolithophores synthesise hard calcium carbonate scales. A globally significant species of coccolithophore is Emiliania huxleyi whose calcite scales have formed the basis of many sedimentary rocks such as limestone, where what was previously atmospheric carbon can remain fixed for geological timescales.

Plants can grow up to 50 percent faster in concentrations of 1,000 ppm CO2 when compared with ambient conditions, though this assumes no change in climate and no limitation on other nutrients.[71] Elevated CO2 levels cause increased growth reflected in the harvestable yield of crops, with wheat, rice and soybean all showing increases in yield of 12–14% under elevated CO2 in FACE experiments.[72][73]

Increased atmospheric CO2 concentrations result in fewer stomata developing on plants[74] which leads to reduced water usage and increased water-use efficiency.[75] Studies using FACE have shown that CO2 enrichment leads to decreased concentrations of micronutrients in crop plants.[76] This may have knock-on effects on other parts of ecosystems as herbivores will need to eat more food to gain the same amount of protein.[77]

The concentration of secondary metabolites such as phenylpropanoids and flavonoids can also be altered in plants exposed to high concentrations of CO2.[78][79]
Plants also emit CO2 during respiration, and so the majority of plants and algae, which use C3 photosynthesis, are only net absorbers during the day. Though a growing forest will absorb many tons of CO2 each year, a mature forest will produce as much CO2 from respiration and decomposition of dead specimens (e.g., fallen branches) as is used in photosynthesis in growing plants.[80] Contrary to the long-standing view that they are carbon neutral, mature forests can continue to accumulate carbon[81] and remain valuable carbon sinks, helping to maintain the carbon balance of the Earth's atmosphere. Additionally, and crucially to life on earth, photosynthesis by phytoplankton consumes dissolved CO2 in the upper ocean and thereby promotes the absorption of CO2 from the atmosphere.[82]

Toxicity

 
Main symptoms of carbon dioxide toxicity, by increasing volume percent in air.[83]

Carbon dioxide content in fresh air (averaged between sea-level and 10 kPa level, i.e., about 30 km altitude) varies between 0.036% (360 ppm) and 0.039% (390 ppm), depending on the location.[84][clarification needed]

CO2 is an asphyxiant gas and not classified as toxic or harmful in accordance with Globally Harmonized System of Classification and Labelling of Chemicals standards of United Nations Economic Commission for Europe by using the OECD Guidelines for the Testing of Chemicals. In concentrations up to 1% (10,000 ppm), it will make some people feel drowsy.[83] Concentrations of 7% to 10% may cause suffocation, even in the presence of sufficient oxygen, manifesting as dizziness, headache, visual and hearing dysfunction, and unconsciousness within a few minutes to an hour.[85] The physiological effects of acute carbon dioxide exposure are grouped together under the term hypercapnia, a subset of asphyxiation.

Because it is heavier than air, in locations where the gas seeps from the ground (due to sub-surface volcanic or geothermal activity) in relatively high concentrations, without the dispersing effects of wind, it can collect in sheltered/pocketed locations below average ground level, causing animals located therein to be suffocated. Carrion feeders attracted to the carcasses are then also killed.
Children have been killed in the same way near the city of Goma by CO
2
emissions from the nearby volcano Mt. Nyiragongo.[86] The Swahili term for this phenomenon is 'mazuku'.
Adaptation to increased concentrations of CO2 occurs in humans. Continuous inhalation of CO2 can be tolerated at three percent inspired concentrations for at least one month and four percent inspired concentrations for over a week. It was suggested[by whom?] that 2.0 percent inspired concentrations could be used for closed air spaces (e.g. a submarine) since the adaptation is physiological and reversible. Decrement in performance or in normal physical activity does not happen at this level.[87][88] However, submarines have carbon dioxide scrubbers which reduce a significant amount of the CO2 present.[89]
Miners, who are particularly vulnerable to gas exposure, referred to mixtures of carbon dioxide and nitrogen as "blackdamp," "choke damp" or "stythe." Before more effective technologies were developed, miners would frequently monitor for dangerous levels of blackdamp and other gases in mine shafts by bringing a caged canary with them as they worked. The canary is more sensitive to asphyxiant gases than humans, and as it became unconscious would stop singing and fall off its perch. The Davy lamp could also detect high levels of blackdamp (which sinks, and collects near the floor) by burning less brightly, while methane, another suffocating gas and explosion risk, would make the lamp burn more brightly.

Carbon dioxide differential above outdoor concentrations at steady state conditions (when the occupancy and ventilation system operation are sufficiently long that CO2 concentration has stabilized) are sometimes used to estimate ventilation rates per person.[citation needed] CO2 is considered[by whom?] to be a surrogate for human bio-effluents and may correlate with other indoor pollutants. Higher CO2 concentrations are associated with occupant health, comfort and performance degradation. ASHRAE Standard 62.1–2007 ventilation rates may result in indoor levels up to 2,100 ppm above ambient outdoor conditions. Thus if the outdoor ambient is 400 ppm, indoor concentrations may reach 2,500 ppm with ventilation rates that meet this industry consensus standard.
Concentrations in poorly ventilated spaces can be found even higher than this (range of 3,000 or 4,000).

Human physiology

Content

The body produces approximately 2.3 pounds (1.0 kg) of carbon dioxide per day per person,[90] containing 0.63 pounds (290 g) of carbon.

In humans, this carbon dioxide is carried through the venous system and is breathed out through the lungs. Therefore, the carbon dioxide content in the body is high in the venous system, and decreases in the respiratory system, resulting in lower concentrations along any arterial system. Carbon dioxide content of the blood is often given as the partial pressure, which is the pressure which carbon dioxide would have had if it alone occupied the volume.[91]

In humans, the carbon dioxide contents are as follows:

Reference ranges or averages for partial pressures of carbon dioxide (abbreviated PCO2)
UnitVenous blood gasAlveolar pulmonary
gas pressures
Arterial blood carbon dioxide
kPa5.5[92]-6.8[92]4.84.7[92]-6.0[92]
mmHg41–513635[93]-45[93]

Transport in the blood[edit]

CO2 is carried in blood in three different ways. (The exact percentages vary depending whether it is arterial or venous blood).
Hemoglobin, the main oxygen-carrying molecule in red blood cells, carries both oxygen and carbon dioxide. However, the CO2 bound to hemoglobin does not bind to the same site as oxygen. Instead, it combines with the N-terminal groups on the four globin chains. However, because of allosteric effects on the hemoglobin molecule, the binding of CO2 decreases the amount of oxygen that is bound for a given partial pressure of oxygen. The decreased binding to carbon dioxide in the blood due to increased oxygen levels is known as the Haldane Effect, and is important in the transport of carbon dioxide from the tissues to the lungs. Conversely, a rise in the partial pressure of CO2 or a lower pH will cause offloading of oxygen from hemoglobin, which is known as the Bohr Effect.

Regulation of respiration

Carbon dioxide is one of the mediators of local autoregulation of blood supply. If its levels are high, the capillaries expand to allow a greater blood flow to that tissue.

Bicarbonate ions are crucial for regulating blood pH. A person's breathing rate influences the level of CO2 in their blood. Breathing that is too slow or shallow causes respiratory acidosis, while breathing that is too rapid leads to hyperventilation, which can cause respiratory alkalosis.

Although the body requires oxygen for metabolism, low oxygen levels normally do not stimulate breathing. Rather, breathing is stimulated by higher carbon dioxide levels. As a result, breathing low-pressure air or a gas mixture with no oxygen at all (such as pure nitrogen) can lead to loss of consciousness without ever experiencing air hunger. This is especially perilous for high-altitude fighter pilots. It is also why flight attendants instruct passengers, in case of loss of cabin pressure, to apply the oxygen mask to themselves first before helping others; otherwise, one risks losing consciousness.[94]

The respiratory centers try to maintain an arterial CO2 pressure of 40 mm Hg. With intentional hyperventilation, the CO2 content of arterial blood may be lowered to 10–20 mm Hg (the oxygen content of the blood is little affected), and the respiratory drive is diminished. This is why one can hold one's breath longer after hyperventilating than without hyperventilating. This carries the risk that unconsciousness may result before the need to breathe becomes overwhelming, which is why hyperventilation is particularly dangerous before free diving. 

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