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Wednesday, September 9, 2015

Quark–gluon plasma


From Wikipedia, the free encyclopedia
A quark–gluon plasma (QGP) or quark soup[1] is a state of matter in quantum chromodynamics (QCD) which is hypothesized to exist at extremely high temperature, density, or both temperature and density. This state is thought to consist of asymptotically free quarks and gluons, which are several of the basic building blocks of matter.[citation needed] It is believed that up to a few milliseconds after the Big Bang, known as the Quark epoch, the Universe was in a quark–gluon plasma state.
The strength of the color force means that unlike the gas-like plasma, quark–gluon plasma behaves as a near-ideal Fermi liquid, although research on flow characteristics is ongoing.[2] In the quark matter phase diagram, QGP is placed in the high-temperature, high-density regime; whereas, ordinary matter is a cold and rarefied mixture of nuclei and vacuum, and the hypothetical quark stars would consist of relatively cold, but dense quark matter.

Experiments at CERN's Super Proton Synchrotron (SPS) first tried to create the QGP in the 1980s and 1990s: the results led CERN to announce indirect evidence for a "new state of matter"[3] in 2000. Current experiments (2011) at the Brookhaven National Laboratory's Relativistic Heavy Ion Collider (RHIC) on Long Island (NY, USA) and at CERN's recent Large Hadron Collider near Geneva (Switzerland) are continuing this effort,[4][5] by colliding relativistically accelerated gold (at RHIC) or lead (at LHC) with each other or with protons. Although the results have yet to be independently verified as of February 2010, scientists at Brookhaven RHIC have tentatively claimed to have created a quark–gluon plasma with an approximate temperature of 4 trillion (4×1012) degrees Kelvin.[5]

As already mentioned, three new experiments running on CERN's Large Hadron Collider (LHC), on the spectrometers ALICE,[6] ATLAS and CMS, will continue studying properties of QGP. Starting in November 2010, CERN temporarily ceased colliding protons, and began colliding lead Ions for the ALICE experiment. They were looking to create a QGP and were expected to stop December 6, colliding protons again in January.[7] A new record breaking temperature was set by ALICE: A Large Ion Collider Experiment at CERN on August, 2012 in the ranges of 5.5 trillion (5.5×1012) degrees Kelvin as claimed in their Nature PR.[8]

General introduction

Quark–gluon plasma is a state of matter in which the elementary particles that make up the hadrons of baryonic matter are freed of their strong attraction for one another under extremely high energy densities. These particles are the quarks and gluons that compose baryonic matter.[9] In normal matter quarks are confined; in the QGP quarks are deconfined. In classical QCD quarks are the Fermionic components of mesons and baryons while the gluons are considered the Bosonic components of such particles. The gluons are the force carriers, or bosons, of the QCD color force, while the quarks by themselves are their Fermionic matter counterparts.

Although the experimental high temperatures and densities predicted as producing a quark–gluon plasma have been realized in the laboratory, the resulting matter does not behave as a quasi-ideal state of free quarks and gluons, but, rather, as an almost perfect dense fluid.[10] Actually, the fact that the quark–gluon plasma will not yet be "free" at temperatures realized at present accelerators was predicted in 1984 as a consequence of the remnant effects of confinement.[11][12]

Relation to normal plasma

A plasma is matter in which charges are screened due to the presence of other mobile charges; for example: Coulomb's Law is suppressed by the screening to yield a distance-dependent charge (Q -> Q × exp(-r/α), i.e, the charge Q is reduced exponentially with the distance divided by a screening length α). In a QGP, the color charge of the quarks and gluons is screened. The QGP has other analogies with a normal plasma. There are also dissimilarities because the color charge is non-abelian, whereas the electric charge is abelian. Outside a finite volume of QGP the color-electric field is not screened, so that a volume of QGP must still be color-neutral. It will therefore, like a nucleus, have integer electric charge.

Theory

One consequence of this difference is that the color charge is too large for perturbative computations which are the mainstay of QED. As a result, the main theoretical tools to explore the theory of the QGP is lattice gauge theory.[13] The transition temperature (approximately 175 MeV) was first predicted by lattice gauge theory. Since then lattice gauge theory has been used to predict many other properties of this kind of matter. The AdS/CFT correspondence conjecture may provide insights in QGP, morever the ultimate goal of the fluid/gravity correspondence is to understand QGP. The QCP is believed to be a phase of QCD which is completely locally thermalized and thus suitable for an effective fluid dynamic description.

Production

The QGP can be created by heating matter up to a temperature of 2×1012 K, which amounts to 175 MeV per particle. This can be accomplished by colliding two large nuclei at high energy (note that 175 MeV is not the energy of the colliding beam). Lead and gold nuclei have been used for such collisions at CERN SPS and BNL RHIC, respectively. The nuclei are accelerated to ultrarelativistic speeds (contracting their length) and directed towards each other, creating a "fireball", in the rare event of a collision. Hydrodynamic simulation predicts this fireball will expand under its own pressure, and cool while expanding. By carefully studying the spherical and elliptic flow, experimentalists put the theory to test.

How the QGP fits into the general scheme of physics

QCD is one part of the modern theory of particle physics called the Standard Model. Other parts of this theory deal with electroweak interactions and neutrinos. The theory of electrodynamics has been tested and found correct to a few parts in a billion. The theory of weak interactions has been tested and found correct to a few parts in a thousand. Perturbative forms of QCD have been tested to a few percent. In contrast, non-perturbative forms of QCD have barely been tested. The study of the QGP is part of this effort to consolidate the grand theory of particle physics.

The study of the QGP is also a testing ground for finite temperature field theory, a branch of theoretical physics which seeks to understand particle physics under conditions of high temperature. Such studies are important to understand the early evolution of our universe: the first hundred microseconds or so. It is crucial to the physics goals of a new generation of observations of the universe (WMAP and its successors). It is also of relevance to Grand Unification Theories which seek to unify the three fundamental forces of nature (excluding gravity).

Expected properties

Thermodynamics

The cross-over temperature from the normal hadronic to the QGP phase is about 175 MeV. This "crossover" may actually not be only a qualitative feature, but instead one may have to do with a true (second order) phase transition, e.g. of the universality class of the three-dimensional Ising model, as some theorists say, e.g. Frithjof Karsch and coworkers from the university of Bielefeld. The phenomena involved correspond to an energy density of a little less than GeV/fm3. For relativistic matter, pressure and temperature are not independent variables, so the equation of state is a relation between the energy density and the pressure. This has been found through lattice computations, and compared to both perturbation theory and string theory. This is still a matter of active research. Response functions such as the specific heat and various quark number susceptibilities are currently being computed.

Flow

The equation of state is an important input into the flow equations. The speed of sound is currently under investigation in lattice computations. The mean free path of quarks and gluons has been computed using perturbation theory as well as string theory. Lattice computations have been slower here, although the first computations of transport coefficients have recently been concluded. These indicate that the mean free time of quarks and gluons in the QGP may be comparable to the average interparticle spacing: hence the QGP is a liquid as far as its flow properties go. This is very much an active field of research, and these conclusions may evolve rapidly. The incorporation of dissipative phenomena into hydrodynamics is another recent development that is still in an active stage.

Excitation spectrum

Does the QGP really contain (almost) free quarks and gluons? The study of thermodynamic and flow properties would indicate that this is an over-simplification. Many ideas are currently being evolved and will be put to test in the near future. It has been hypothesized recently that some mesons built from heavy quarks do not dissolve until the temperature reaches about 350 MeV. This has led to speculation that many other kinds of bound states may exist in the plasma. Some static properties of the plasma (similar to the Debye screening length) constrain the excitation spectrum.

Glasma hypothesis

Since 2008, there is a discussion about a hypothetical precursor state of the Quark–gluon plasma, the so-called "Glasma", where the dressed particles are condensed into some kind of glassy (or amorphous) state, below the genuine transition between the confined state and the plasma liquid.[3] This would be analogous to the formation of metallic glasses, or amorphous alloys of them, below the genuine onset of the liquid metallic state.

Experimental situation

Those forms of the QGP that are easiest to compute are not those that are easiest to verify experimentally. While the balance of evidence points towards the QGP being the origin of the detailed properties of the fireball produced in the RHIC, this is the main barrier which prevents experimentalists from declaring a sighting of the QGP. For a summary see 2005 RHIC Assessment.
The important classes of experimental observations are
In short, a quark–gluon plasma flows like a splat of liquid, and because it's not "transparent" with respect to quarks, it can attenuate jets emitted by collisions. Furthermore, once formed, a ball of quark–gluon plasma, like any hot object, transfers heat internally by radiation. However, unlike in everyday objects, there is enough energy available that gluons (particles mediating the strong force) collide and produce an excess of the heavy (i.e. high-energy) strange quarks. Whereas, if the QGP didn't exist and there was a pure collision, the same energy would be converted into even heavier quarks such as charm quarks or bottom quarks.

Formation of quark matter

In April 2005, formation of quark matter was tentatively confirmed by results obtained at Brookhaven National Laboratory's Relativistic Heavy Ion Collider (RHIC). The consensus of the four RHIC research groups was that they had created a quark–gluon liquid of very low viscosity. However, contrary to what was at that time still the widespread assumption, it is yet unknown from theoretical predictions whether the QCD "plasma", especially close to the transition temperature, should behave like a gas or liquid. Authors favoring the weakly interacting interpretation derive their assumptions from the lattice QCD calculation, where the entropy density of quark–gluon plasma approaches the weakly interacting limit. However, since both energy density and correlation shows significant deviation from the weakly interacting limit, it has been pointed out by many authors that there is in fact no reason to assume a QCD "plasma" close to the transition point should be weakly interacting, like electromagnetic plasma (see, e.g.,[14]). That being said, systematically improvable perturbative QCD quasiparticle models do a very good job of reproducing the lattice data for thermodynamical observables (pressure, entropy, quark susceptibility), including the aforementioned "significant deviation from the weakly interacting limit", down to temperatures on the order of 2 to 3 times the critical temperature for the transition.[15][16][17]

Antioxidant


From Wikipedia, the free encyclopedia


Model of the antioxidant metabolite glutathione. The yellow sphere is the redox-active sulfur atom that provides antioxidant activity, while the red, blue, white, and dark grey spheres represent oxygen, nitrogen, hydrogen, and carbon atoms, respectively.

An antioxidant is a molecule that inhibits the oxidation of other molecules. Oxidation is a chemical reaction involving the loss of electrons or an increase in oxidation state. Oxidation reactions can produce free radicals. In turn, these radicals can start chain reactions. When the chain reaction occurs in a cell, it can cause damage or death to the cell. Antioxidants terminate these chain reactions by removing free radical intermediates, and inhibit other oxidation reactions. They do this by being oxidized themselves, so antioxidants are often reducing agents such as thiols, ascorbic acid (vitamin C), or polyphenols.[1]

Substituted phenols and derivatives of phenylenediamine are common antioxidants used to inhibit gum formation in gasoline (petrol).

Although oxidation reactions are crucial for life, they can also be damaging; plants and animals maintain complex systems of multiple types of antioxidants, such as glutathione, vitamin C, vitamin A, and vitamin E as well as enzymes such as catalase, superoxide dismutase and various peroxidases. Insufficient levels of antioxidants, or inhibition of the antioxidant enzymes, cause oxidative stress and may damage or kill cells. Oxidative stress is damage to cell structure and cell function by overly reactive oxygen-containing molecules and chronic excessive inflammation. Oxidative stress seems to play a significant role in many human diseases, including cancers. The use of antioxidants in pharmacology is intensively studied, particularly as treatments for stroke and neurodegenerative diseases. For these reasons, oxidative stress can be considered to be both the cause and the consequence of some diseases.

Antioxidants are widely used in dietary supplements and have been investigated for the prevention of diseases such as cancer, coronary heart disease and altitude sickness.[2] Although initial studies suggested that antioxidant supplements might promote health, later large trials including of beta-carotene, vitamin A, and vitamin E singly or in different combinations suggest that supplementation has no effect on mortality or possibly increases it.[3][4][5] Randomized trials of taking antioxidants including beta carotene, vitamin E, vitamin C and selenium have shown no effect on cancer risk or have increased cancer risk.[6][7][8][9][10][11][12] Supplementation with selenium or vitamin E does not reduce the risk of cardiovascular disease.[13][14]

Antioxidants also have many industrial uses, such as preservatives in food and cosmetics and to prevent the degradation of rubber and gasoline.[15]

Health effects

Pharmaceuticals

Tirilazad mesylate is an anti-oxidant steroid derivative that inhibits the lipid peroxidation that is believed to play a key in neuronal death in stroke and head injury. It demonstrated activity in animal models of stroke.[16] Human trials demonstrated no effect on mortality or other outcomes in subarachnoid haemorrhage,[17] and worsened results in ischemic stroke.[18]

Similarly, the designed antioxidant NXY-059 exhibited efficacy in animal models, but failed to improve stroke outcomes in a clinical trial.[19] As of November 2014, other antioxidants are being studied as potential neuroprotectants.[20]

Common pharmaceuticals (and supplements) with antioxidant properties may interfere with the efficacy of certain anticancer medication and radiation.[21][22]

Relation to diet


Structure of resveratrol under study for its potential as a dietary antioxidant

Although some levels of antioxidant vitamins in the diet are required for good health, there is considerable doubt as to whether antioxidant supplements have anti-disease activity; and if they are actually beneficial, which antioxidant(s) are needed and in what amounts.[23][24][25] Indeed, some authors argue that the hypothesis that antioxidants could prevent chronic diseases[23][26] has now been disproved and that the idea was misguided from the beginning.[27] Rather, dietary polyphenols may have non-antioxidant roles in minute concentrations that affect cell-to-cell signaling, receptor sensitivity, inflammatory enzyme activity or gene regulation.[28][29]

For overall life expectancy, it has even been suggested that moderate levels of oxidative stress may increase lifespan in the worm Caenorhabditis elegans, by inducing a protective response to increased levels of reactive oxygen species.[30] The suggestion that increased life expectancy comes from increased oxidative stress conflicts with results seen in the yeast Saccharomyces cerevisiae,[31] and the situation in mammals is even less clear.[32][33][34] Nevertheless, antioxidant supplements do not appear to increase life expectancy in humans.[35]

Although antioxidants have been investigated for potential effects on neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, and amyotrophic lateral sclerosis,[36][37] these studies have been inconclusive.[38][39][40]

Physical exercise

During exercise, oxygen consumption can increase by a factor of more than 10.[41] This leads to a large increase in the production of oxidants and results in damage that contributes to muscular fatigue during and after exercise. The inflammatory response that occurs after strenuous exercise is also associated with oxidative stress, especially in the 24 hours after an exercise session. The immune system response to the damage done by exercise peaks 2 to 7 days after exercise, which is the period during which most of the adaptation that leads to greater fitness occurs. During this process, free radicals are produced by neutrophils to remove damaged tissue. As a result, excessive antioxidant levels may inhibit recovery and adaptation mechanisms.[42]

The evidence for benefits from antioxidant supplementation in vigorous exercise is mixed. There is strong evidence that one of the adaptations resulting from exercise is a strengthening of the body's antioxidant defenses, particularly the glutathione system, to regulate the increased oxidative stress.[43] This effect may be to some extent protective against diseases which are associated with oxidative stress, which would provide a partial explanation for the lower incidence of major diseases and better health of those who undertake regular exercise.[44]

No benefits for physical performance to athletes are seen with vitamin E supplementation.[45] Indeed, despite its key role in preventing lipid membrane peroxidation, 6 weeks of vitamin E supplementation had no effect on muscle damage in ultramarathon runners.[46] Although there appears to be no increased requirement for vitamin C in athletes, there is some evidence that vitamin C supplementation increased the amount of intense exercise that can be done and vitamin C supplementation before strenuous exercise may reduce the amount of muscle damage.[47][48] Other studies found no such effects, and some research suggests that supplementation with amounts as high as 1000 mg inhibits recovery.[49]

A review published in Sports Medicine looked at 150 studies on antioxidant supplementation during exercise. The review found that even studies that found a reduction in oxidative stress failed to demonstrate benefits to performance or prevention of muscle damage. Some studies indicated that antioxidant supplementation could work against the cardiovascular benefits of exercise.[50]

Adverse effects


Structure of the metal chelator phytic acid.

Relatively strong reducing acids can have antinutrient effects by binding to dietary minerals such as iron and zinc in the gastrointestinal tract and preventing them from being absorbed.[51] Notable examples are oxalic acid, tannins and phytic acid, which are high in plant-based diets.[52] Calcium and iron deficiencies are not uncommon in diets in developing countries where less meat is eaten and there is high consumption of phytic acid from beans and unleavened whole grain bread.[53]

Foods Reducing acid present
Cocoa bean and chocolate, spinach, turnip and rhubarb.[54] Oxalic acid
Whole grains, maize, legumes.[55] Phytic acid
Tea, beans, cabbage.[54][56] Tannins

Nonpolar antioxidants such as eugenol—a major component of oil of cloves—have toxicity limits that can be exceeded with the misuse of undiluted essential oils.[57] Toxicity associated with high doses of water-soluble antioxidants such as ascorbic acid are less of a concern, as these compounds can be excreted rapidly in urine.[58] More seriously, very high doses of some antioxidants may have harmful long-term effects. The beta-Carotene and Retinol Efficacy Trial (CARET) study of lung cancer patients found that smokers given supplements containing beta-carotene and vitamin A had increased rates of lung cancer.[59] Subsequent studies confirmed these adverse effects.[60]

These harmful effects may also be seen in non-smokers, as a recent meta-analysis including data from approximately 230,000 patients showed that β-carotene, vitamin A or vitamin E supplementation is associated with increased mortality but saw no significant effect from vitamin C.[61] No health risk was seen when all the randomized controlled studies were examined together, but an increase in mortality was detected when only high-quality and low-bias risk trials were examined separately.[62] As the majority of these low-bias trials dealt with either elderly people, or people with disease, these results may not apply to the general population.[63] This meta-analysis was later repeated and extended by the same authors, with the new analysis published by the Cochrane Collaboration; confirming the previous results.[62] These two publications are consistent with some previous meta-analyzes that also suggested that Vitamin E supplementation increased mortality,[64] and that antioxidant supplements increased the risk of colon cancer.[65] Beta-carotene may also increase lung cancer.[65][66] Overall, the large number of clinical trials carried out on antioxidant supplements suggest that either these products have no effect on health, or that they cause a small increase in mortality in elderly or vulnerable populations.[23][24][61]

While antioxidant supplementation is widely used in attempts to prevent the development of cancer, antioxidants may interfere with cancer treatments,[67] since the environment of cancer cells causes high levels of oxidative stress, making these cells more susceptible to the further oxidative stress induced by treatments. As a result, by reducing the redox stress in cancer cells, antioxidant supplements (and pharmaceuticals) could decrease the effectiveness of radiotherapy and chemotherapy.[21][68][69] On the other hand, other reviews have suggested that antioxidants could reduce side effects or increase survival times.[70][71]

Uses in technology

Food preservatives

Antioxidants are used as food additives to help guard against food deterioration. Exposure to oxygen and sunlight are the two main factors in the oxidation of food, so food is preserved by keeping in the dark and sealing it in containers or even coating it in wax, as with cucumbers. However, as oxygen is also important for plant respiration, storing plant materials in anaerobic conditions produces unpleasant flavors and unappealing colors.[72] Consequently, packaging of fresh fruits and vegetables contains an ~8% oxygen atmosphere. Antioxidants are an especially important class of preservatives as, unlike bacterial or fungal spoilage, oxidation reactions still occur relatively rapidly in frozen or refrigerated food.[73] These preservatives include natural antioxidants such as ascorbic acid (AA, E300) and tocopherols (E306), as well as synthetic antioxidants such as propyl gallate (PG, E310), tertiary butylhydroquinone (TBHQ), butylated hydroxyanisole (BHA, E320) and butylated hydroxytoluene (BHT, E321).[74][75]

The most common molecules attacked by oxidation are unsaturated fats; oxidation causes them to turn rancid.[76] Since oxidized lipids are often discolored and usually have unpleasant tastes such as metallic or sulfurous flavors, it is important to avoid oxidation in fat-rich foods. Thus, these foods are rarely preserved by drying; instead, they are preserved by smoking, salting or fermenting. Even less fatty foods such as fruits are sprayed with sulfurous antioxidants prior to air drying. Oxidation is often catalyzed by metals, which is why fats such as butter should never be wrapped in aluminium foil or kept in metal containers. Some fatty foods such as olive oil are partially protected from oxidation by their natural content of antioxidants, but remain sensitive to photooxidation.[77] Antioxidant preservatives are also added to fat based cosmetics such as lipstick and moisturizers to prevent rancidity.

Industrial uses

Antioxidants are frequently added to industrial products. A common use is as stabilizers in fuels and lubricants to prevent oxidation, and in gasolines to prevent the polymerization that leads to the formation of engine-fouling residues.[78] In 2007, the worldwide market for industrial antioxidants had a total volume of around 0.88 million tons. This created a revenue of circa 3.7 billion US-dollars (2.4 billion Euros).[79]

They are widely used to prevent the oxidative degradation of polymers such as rubbers, plastics and adhesives that causes a loss of strength and flexibility in these materials.[80] Polymers containing double bonds in their main chains, such as natural rubber and polybutadiene, are especially susceptible to oxidation and ozonolysis. They can be protected by antiozonants. Solid polymer products start to crack on exposed surfaces as the material degrades and the chains break. The mode of cracking varies between oxygen and ozone attack, the former causing a "crazy paving" effect, while ozone attack produces deeper cracks aligned at right angles to the tensile strain in the product. Oxidation and UV degradation are also frequently linked, mainly because UV radiation creates free radicals by bond breakage. The free radicals then react with oxygen to produce peroxy radicals which cause yet further damage, often in a chain reaction. Other polymers susceptible to oxidation include polypropylene and polyethylene. The former is more sensitive owing to the presence of secondary carbon atoms present in every repeat unit. Attack occurs at this point because the free radical formed is more stable than one formed on a primary carbon atom. Oxidation of polyethylene tends to occur at weak links in the chain, such as branch points in low density polyethylene.

Fuel additive Components[81] Applications[81]
AO-22 N,N'-di-2-butyl-1,4-phenylenediamine Turbine oils, transformer oils, hydraulic fluids, waxes, and greases
AO-24 N,N'-di-2-butyl-1,4-phenylenediamine Low-temperature oils
AO-29 2,6-di-tert-butyl-4-methylphenol Turbine oils, transformer oils, hydraulic fluids, waxes, greases, and gasolines
AO-30 2,4-dimethyl-6-tert-butylphenol Jet fuels and gasolines, including aviation gasolines
AO-31 2,4-dimethyl-6-tert-butylphenol Jet fuels and gasolines, including aviation gasolines
AO-32 2,4-dimethyl-6-tert-butylphenol and 2,6-di-tert-butyl-4-methylphenol Jet fuels and gasolines, including aviation gasolines
AO-37 2,6-di-tert-butylphenol Jet fuels and gasolines, widely approved for aviation fuels

Oxidative challenge in biology

The structure of the antioxidant vitamin ascorbic acid (vitamin C).

A paradox in metabolism is that, while the vast majority of complex life on Earth requires oxygen for its existence, oxygen is a highly reactive molecule that damages living organisms by producing reactive oxygen species.[82] Consequently, organisms contain a complex network of antioxidant metabolites and enzymes that work together to prevent oxidative damage to cellular components such as DNA, proteins and lipids.[1][83] In general, antioxidant systems either prevent these reactive species from being formed, or remove them before they can damage vital components of the cell.[1][82] However, reactive oxygen species also have useful cellular functions, such as redox signaling. Thus, the function of antioxidant systems is not to remove oxidants entirely, but instead to keep them at an optimum level.[84]

The reactive oxygen species produced in cells include hydrogen peroxide (H2O2), hypochlorous acid (HClO), and free radicals such as the hydroxyl radical (·OH) and the superoxide anion (O2).[85] The hydroxyl radical is particularly unstable and will react rapidly and non-specifically with most biological molecules. This species is produced from hydrogen peroxide in metal-catalyzed redox reactions such as the Fenton reaction.[86] These oxidants can damage cells by starting chemical chain reactions such as lipid peroxidation, or by oxidizing DNA or proteins.[1] Damage to DNA can cause mutations and possibly cancer, if not reversed by DNA repair mechanisms,[87][88] while damage to proteins causes enzyme inhibition, denaturation and protein degradation.[89]

The use of oxygen as part of the process for generating metabolic energy produces reactive oxygen species.[90] In this process, the superoxide anion is produced as a by-product of several steps in the electron transport chain.[91] Particularly important is the reduction of coenzyme Q in complex III, since a highly reactive free radical is formed as an intermediate (Q·). This unstable intermediate can lead to electron "leakage", when electrons jump directly to oxygen and form the superoxide anion, instead of moving through the normal series of well-controlled reactions of the electron transport chain.[92] Peroxide is also produced from the oxidation of reduced flavoproteins, such as complex I.[93] However, although these enzymes can produce oxidants, the relative importance of the electron transfer chain to other processes that generate peroxide is unclear.[94][95] In plants, algae, and cyanobacteria, reactive oxygen species are also produced during photosynthesis,[96] particularly under conditions of high light intensity.[97] This effect is partly offset by the involvement of carotenoids in photoinhibition, and in algae and cyanobacteria, by large amount of iodide and selenium,[98] which involves these antioxidants reacting with over-reduced forms of the photosynthetic reaction centres to prevent the production of reactive oxygen species.[99][100]

Metabolites

Antioxidants are classified into two broad divisions, depending on whether they are soluble in water (hydrophilic) or in lipids (lipophilic). In general, water-soluble antioxidants react with oxidants in the cell cytosol and the blood plasma, while lipid-soluble antioxidants protect cell membranes from lipid peroxidation.[1] These compounds may be synthesized in the body or obtained from the diet.[83] The different antioxidants are present at a wide range of concentrations in body fluids and tissues, with some such as glutathione or ubiquinone mostly present within cells, while others such as uric acid are more evenly distributed (see table below). Some antioxidants are only found in a few organisms and these compounds can be important in pathogens and can be virulence factors.[101]

The relative importance and interactions between these different antioxidants is a very complex question, with the various metabolites and enzyme systems having synergistic and interdependent effects on one another.[102][103] The action of one antioxidant may therefore depend on the proper function of other members of the antioxidant system.[83] The amount of protection provided by any one antioxidant will also depend on its concentration, its reactivity towards the particular reactive oxygen species being considered, and the status of the antioxidants with which it interacts.[83]

Some compounds contribute to antioxidant defense by chelating transition metals and preventing them from catalyzing the production of free radicals in the cell. Particularly important is the ability to sequester iron, which is the function of iron-binding proteins such as transferrin and ferritin.[95] Selenium and zinc are commonly referred to as antioxidant nutrients, but these chemical elements have no antioxidant action themselves and are instead required for the activity of some antioxidant enzymes, as is discussed below.

Antioxidant metabolite Solubility Concentration in human serum (μM)[104] Concentration in liver tissue (μmol/kg)
Ascorbic acid (vitamin C) Water 50 – 60[105] 260 (human)[106]
Glutathione Water 4[107] 6,400 (human)[106]
Lipoic acid Water 0.1 – 0.7[108] 4 – 5 (rat)[109]
Uric acid Water 200 – 400[110] 1,600 (human)[106]
Carotenes Lipid β-carotene: 0.5 – 1[111]
retinol (vitamin A): 1 – 3[112]
5 (human, total carotenoids)[113]
α-Tocopherol (vitamin E) Lipid 10 – 40[112] 50 (human)[106]
Ubiquinol (coenzyme Q) Lipid 5[114] 200 (human)[115]

Uric acid

Uric acid is by far the highest concentration antioxidant in human blood. Uric acid (UA) is an antioxidant oxypurine produced from xanthine by the enzyme xanthine oxidase, and is an intermediate product of purine metabolism.[116] In almost all land animals, urate oxidase further catalyzes the oxidation of uric acid to allantoin,[117] but in humans and most higher primates, the urate oxidase gene is nonfunctional, so that UA is not further broken down.[117][118] The evolutionary reasons for this loss of urate conversion to allantoin remain the topic of active speculation.[119][120] The antioxidant effects of uric acid have led researchers to suggest this mutation was beneficial to early primates and humans.[120][121] Studies of high altitude acclimatization support the hypothesis that urate acts as an antioxidant by mitigating the oxidative stress caused by high-altitude hypoxia.[122] In animal studies that investigate diseases facilitated by oxidative stress, introduction of UA both prevents the disease or reduces it, leading researchers to propose this is due to UA's antioxidant properties.[123] Studies of UA's antioxidant mechanism support this proposal.[124]

With respect to multiple sclerosis, Gwen Scott explains the significance of uric acid as an antioxidant by proposing that "Serum UA levels are inversely associated with the incidence of MS in humans because MS patients have low serum UA levels and individuals with hyperuricemia (gout) rarely develop the disease. Moreover, the administration of UA is therapeutic in experimental allergic encephalomyelitis (EAE), an animal model of MS."[123][125][126] In sum, while the mechanism of UA as an antioxidant is well-supported, the claim that its levels affect MS risk is still controversial,[127][128] and requires more research.

Likewise, UA has the highest concentration of any blood antioxidant[110] and provides over half of the total antioxidant capacity of human serum.[129] Uric acid's antioxidant activities are also complex, given that it does not react with some oxidants, such as superoxide, but does act against peroxynitrite,[130] peroxides, and hypochlorous acid.[116] Concerns over elevated UA's contribution to gout must be considered as one of many risk factors.[131] By itself, UA-related risk of gout at high levels (415–530 μmol/L) is only 0.5% per year with an increase to 4.5% per year at UA supersaturation levels (535+ μmol/L).[132] Many of these aforementioned studies determined UA's antioxidant actions within normal physiological levels,[122][130] and some found antioxidant activity at levels as high as 285 μmol/L.[133]

Vitamin C

Ascorbic acid or "vitamin C" is a monosaccharide oxidation-reduction (redox) catalyst found in both animals and plants. As one of the enzymes needed to make ascorbic acid has been lost by mutation during primate evolution, humans must obtain it from the diet; it is therefore a vitamin.[134] Most other animals are able to produce this compound in their bodies and do not require it in their diets.[135] Ascorbic acid is required for the conversion of the procollagen to collagen by oxidizing proline residues to hydroxyproline. In other cells, it is maintained in its reduced form by reaction with glutathione, which can be catalysed by protein disulfide isomerase and glutaredoxins.[136][137] Ascorbic acid is a redox catalyst which can reduce, and thereby neutralize, reactive oxygen species such as hydrogen peroxide.[138] In addition to its direct antioxidant effects, ascorbic acid is also a substrate for the redox enzyme ascorbate peroxidase, a function that is particularly important in stress resistance in plants.[139] Ascorbic acid is present at high levels in all parts of plants and can reach concentrations of 20 millimolar in chloroplasts.[140]

Glutathione


The free radical mechanism of lipid peroxidation.

Glutathione is a cysteine-containing peptide found in most forms of aerobic life.[141] It is not required in the diet and is instead synthesized in cells from its constituent amino acids.[142] Glutathione has antioxidant properties since the thiol group in its cysteine moiety is a reducing agent and can be reversibly oxidized and reduced. In cells, glutathione is maintained in the reduced form by the enzyme glutathione reductase and in turn reduces other metabolites and enzyme systems, such as ascorbate in the glutathione-ascorbate cycle, glutathione peroxidases and glutaredoxins, as well as reacting directly with oxidants.[136] Due to its high concentration and its central role in maintaining the cell's redox state, glutathione is one of the most important cellular antioxidants.[141] In some organisms glutathione is replaced by other thiols, such as by mycothiol in the Actinomycetes, bacillithiol in some Gram-positive bacteria,[143][144] or by trypanothione in the Kinetoplastids.[145][146]

Melatonin

Melatonin is a powerful antioxidant.[147] Melatonin easily crosses cell membranes and the blood–brain barrier.[148] Unlike other antioxidants, melatonin does not undergo redox cycling, which is the ability of a molecule to undergo repeated reduction and oxidation. Redox cycling may allow other antioxidants (such as vitamin C) to act as pro-oxidants and promote free radical formation. Melatonin, once oxidized, cannot be reduced to its former state because it forms several stable end-products upon reacting with free radicals. Therefore, it has been referred to as a terminal (or suicidal) antioxidant.[149]

Vitamin E

Vitamin E is the collective name for a set of eight related tocopherols and tocotrienols, which are fat-soluble vitamins with antioxidant properties.[150][151] Of these, α-tocopherol has been most studied as it has the highest bioavailability, with the body preferentially absorbing and metabolising this form.[152]

It has been claimed that the α-tocopherol form is the most important lipid-soluble antioxidant, and that it protects membranes from oxidation by reacting with lipid radicals produced in the lipid peroxidation chain reaction.[150][153] This removes the free radical intermediates and prevents the propagation reaction from continuing. This reaction produces oxidised α-tocopheroxyl radicals that can be recycled back to the active reduced form through reduction by other antioxidants, such as ascorbate, retinol or ubiquinol.[154] This is in line with findings showing that α-tocopherol, but not water-soluble antioxidants, efficiently protects glutathione peroxidase 4 (GPX4)-deficient cells from cell death.[155] GPx4 is the only known enzyme that efficiently reduces lipid-hydroperoxides within biological membranes.

However, the roles and importance of the various forms of vitamin E are presently unclear,[156][157] and it has even been suggested that the most important function of α-tocopherol is as a signaling molecule, with this molecule having no significant role in antioxidant metabolism.[158][159] The functions of the other forms of vitamin E are even less well-understood, although γ-tocopherol is a nucleophile that may react with electrophilic mutagens,[152] and tocotrienols may be important in protecting neurons from damage.[160]

Pro-oxidant activities

Antioxidants that are reducing agents can also act as pro-oxidants. For example, vitamin C has antioxidant activity when it reduces oxidizing substances such as hydrogen peroxide,[161] however, it will also reduce metal ions that generate free radicals through the Fenton reaction.[86][162]
2 Fe3+ + Ascorbate → 2 Fe2+ + Dehydroascorbate
2 Fe2+ + 2 H2O2 → 2 Fe3+ + 2 OH· + 2 OH
The relative importance of the antioxidant and pro-oxidant activities of antioxidants is an area of current research, but vitamin C, which exerts its effects as a vitamin by oxidizing polypeptides, appears to have a mostly antioxidant action in the human body.[162][163] However, less data is available for other dietary antioxidants, such as vitamin E,[164] or the polyphenols.[165][166] Likewise, the pathogenesis of diseases involving hyperuricemia likely involve uric acid's direct and indirect pro-oxidant properties.

That is, paradoxically, agents which are normally considered antioxidants can act as conditional pro-oxidants and actually increase oxidative stress. Besides ascorbate, medically important conditional pro-oxidants include uric acid and sulfhydryl amino acids such as homocysteine. Typically, this involves some transition-series metal such as copper or iron as catalyst. The potential role of the pro-oxidant role of uric acid in (e.g.) atherosclerosis and ischemic stroke is considered above. Another example is the postulated role of homocysteine in atherosclerosis.

Negative health effects

Some antioxidant supplements may promote disease and increase mortality in humans under certain conditions.[61][166] Hypothetically, free radicals induce an endogenous response that protects against exogenous radicals (and possibly other toxic compounds).[167] Free radicals may increase life span.[166] This increase may be prevented by antioxidants, providing direct evidence that toxic radicals may mitohormetically exert life extending and health promoting effects.[61][166]

Enzyme systems


Enzymatic pathway for detoxification of reactive oxygen species.

As with the chemical antioxidants, cells are protected against oxidative stress by an interacting network of antioxidant enzymes.[1][82] Here, the superoxide released by processes such as oxidative phosphorylation is first converted to hydrogen peroxide and then further reduced to give water. This detoxification pathway is the result of multiple enzymes, with superoxide dismutases catalysing the first step and then catalases and various peroxidases removing hydrogen peroxide. As with antioxidant metabolites, the contributions of these enzymes to antioxidant defenses can be hard to separate from one another, but the generation of transgenic mice lacking just one antioxidant enzyme can be informative.[168]

Superoxide dismutase, catalase and peroxiredoxins

Superoxide dismutases (SODs) are a class of closely related enzymes that catalyze the breakdown of the superoxide anion into oxygen and hydrogen peroxide.[169][170] SOD enzymes are present in almost all aerobic cells and in extracellular fluids.[171] Superoxide dismutase enzymes contain metal ion cofactors that, depending on the isozyme, can be copper, zinc, manganese or iron. In humans, the copper/zinc SOD is present in the cytosol, while manganese SOD is present in the mitochondrion.[170] There also exists a third form of SOD in extracellular fluids, which contains copper and zinc in its active sites.[172] The mitochondrial isozyme seems to be the most biologically important of these three, since mice lacking this enzyme die soon after birth.[173] In contrast, the mice lacking copper/zinc SOD (Sod1) are viable but have numerous pathologies and a reduced lifespan (see article on superoxide), while mice without the extracellular SOD have minimal defects (sensitive to hyperoxia).[168][174] In plants, SOD isozymes are present in the cytosol and mitochondria, with an iron SOD found in chloroplasts that is absent from vertebrates and yeast.[175]

Catalases are enzymes that catalyse the conversion of hydrogen peroxide to water and oxygen, using either an iron or manganese cofactor.[176][177] This protein is localized to peroxisomes in most eukaryotic cells.[178] Catalase is an unusual enzyme since, although hydrogen peroxide is its only substrate, it follows a ping-pong mechanism. Here, its cofactor is oxidised by one molecule of hydrogen peroxide and then regenerated by transferring the bound oxygen to a second molecule of substrate.[179] Despite its apparent importance in hydrogen peroxide removal, humans with genetic deficiency of catalase — "acatalasemia" — or mice genetically engineered to lack catalase completely, suffer few ill effects.[180][181]

Decameric structure of AhpC, a bacterial 2-cysteine peroxiredoxin from Salmonella typhimurium.[182]

Peroxiredoxins are peroxidases that catalyze the reduction of hydrogen peroxide, organic hydroperoxides, as well as peroxynitrite.[183] They are divided into three classes: typical 2-cysteine peroxiredoxins; atypical 2-cysteine peroxiredoxins; and 1-cysteine peroxiredoxins.[184] These enzymes share the same basic catalytic mechanism, in which a redox-active cysteine (the peroxidatic cysteine) in the active site is oxidized to a sulfenic acid by the peroxide substrate.[185] Over-oxidation of this cysteine residue in peroxiredoxins inactivates these enzymes, but this can be reversed by the action of sulfiredoxin.[186] Peroxiredoxins seem to be important in antioxidant metabolism, as mice lacking peroxiredoxin 1 or 2 have shortened lifespan and suffer from hemolytic anaemia, while plants use peroxiredoxins to remove hydrogen peroxide generated in chloroplasts.[187][188][189]

Thioredoxin and glutathione systems

The thioredoxin system contains the 12-kDa protein thioredoxin and its companion thioredoxin reductase.[190] Proteins related to thioredoxin are present in all sequenced organisms. Plants, such as Arabidopsis thaliana, have a particularly great diversity of isoforms.[191] The active site of thioredoxin consists of two neighboring cysteines, as part of a highly conserved CXXC motif, that can cycle between an active dithiol form (reduced) and an oxidized disulfide form. In its active state, thioredoxin acts as an efficient reducing agent, scavenging reactive oxygen species and maintaining other proteins in their reduced state.[192] After being oxidized, the active thioredoxin is regenerated by the action of thioredoxin reductase, using NADPH as an electron donor.[193]

The glutathione system includes glutathione, glutathione reductase, glutathione peroxidases and glutathione S-transferases.[141] This system is found in animals, plants and microorganisms.[141][194] Glutathione peroxidase is an enzyme containing four selenium-cofactors that catalyzes the breakdown of hydrogen peroxide and organic hydroperoxides. There are at least four different glutathione peroxidase isozymes in animals.[195] Glutathione peroxidase 1 is the most abundant and is a very efficient scavenger of hydrogen peroxide, while glutathione peroxidase 4 is most active with lipid hydroperoxides. Surprisingly, glutathione peroxidase 1 is dispensable, as mice lacking this enzyme have normal lifespans,[196] but they are hypersensitive to induced oxidative stress.[197] In addition, the glutathione S-transferases show high activity with lipid peroxides.[198] These enzymes are at particularly high levels in the liver and also serve in detoxification metabolism.[199]

Oxidative stress in disease

Oxidative stress is thought to contribute to the development of a wide range of diseases including Alzheimer's disease,[200][201] Parkinson's disease,[202] the pathologies caused by diabetes,[203][204] rheumatoid arthritis,[205] and neurodegeneration in motor neuron diseases.[206] In many of these cases, it is unclear if oxidants trigger the disease, or if they are produced as a secondary consequence of the disease and from general tissue damage;[85] One case in which this link is particularly well-understood is the role of oxidative stress in cardiovascular disease. Here, low density lipoprotein (LDL) oxidation appears to trigger the process of atherogenesis, which results in atherosclerosis, and finally cardiovascular disease.[207][208]
Oxidative damage in DNA can cause cancer. Several antioxidant enzymes such as superoxide dismutase, catalase, glutathione peroxidase, glutathione reductase, glutathione S-transferase etc. protect DNA from oxidative stress. It has been proposed that polymorphisms in these enzymes are associated with DNA damage and subsequently the individual's risk of cancer susceptibility.[209]

A low calorie diet extends median and maximum lifespan in many animals. This effect may involve a reduction in oxidative stress.[210] While there is some evidence to support the role of oxidative stress in aging in model organisms such as Drosophila melanogaster and Caenorhabditis elegans,[211][212] the evidence in mammals is less clear.[32][33][34] Indeed, a 2009 review of experiments in mice concluded that almost all manipulations of antioxidant systems had no effect on aging.[213] Diets high in fruit and vegetables, which are high in antioxidants, promote health and reduce the effects of aging; antioxidant vitamin supplementation has no detectable effect on the aging process, so the effects of fruit and vegetables may be unrelated to their antioxidant contents.[214][215] One reason for this might be the fact that consuming antioxidant molecules such as polyphenols and vitamin E will produce changes in other parts of metabolism, and it may be these other effects that are the real reason these compounds are important in human nutrition.[158][216]

Measurement and levels in food

Fruits and vegetables are good sources of antioxidant vitamins.

Antioxidant vitamins are found in vegetables, fruits, eggs, legumes and nuts. Vitamins A, C or E can be destroyed by long-term storage or prolonged cooking.[217] The effects of cooking and food processing are complex, as these processes can also increase the bioavailability of antioxidants, such as some carotenoids in vegetables.[218] Processed food contains fewer antioxidant vitamins than fresh and uncooked foods, as preparation exposes food to heat and oxygen.[219]

Antioxidant vitamins Foods containing high levels of antioxidant vitamins[56][220][221]
Vitamin C (ascorbic acid) Fresh or frozen fruits and vegetables
Vitamin E (tocopherols, tocotrienols) Vegetable oils, nuts and seeds
Carotenoids (carotenes as provitamin A) Fruit, vegetables and eggs

Other antioxidants are not vitamins and are instead made in the body. For example, ubiquinol (coenzyme Q) is poorly absorbed from the gut and is made in humans through the mevalonate pathway.[115] Another example is glutathione, which is made from amino acids. As any glutathione in the gut is broken down to free cysteine, glycine and glutamic acid before being absorbed, even large oral doses have little effect on the concentration of glutathione in the body.[222][223] Although large amounts of sulfur-containing amino acids such as acetylcysteine can increase glutathione,[224] no evidence exists that eating high levels of these glutathione precursors is beneficial for healthy adults.[225] Supplying more of these precursors may be useful as part of the treatment of some diseases, such as acute respiratory distress syndrome, protein-energy malnutrition, or preventing the liver damage produced by paracetamol overdose.[224][226]

Other compounds in the diet can alter the levels of antioxidants by acting as pro-oxidants whereby consuming the compound may cause oxidative stress, possibly resulting in higher levels of antioxidant enzymes.[27]

Invalidation of ORAC

Measurement of antioxidant content in food is not a straightforward process, as this is a diverse group of compounds with different reactivities to various reactive oxygen species. In food science, the oxygen radical absorbance capacity (ORAC) used to be the industry standard for antioxidant strength of whole foods, juices and food additives.[227][228] However, the United States Department of Agriculture (USDA) withdrew these ratings in 2012 as biologically invalid, stating that no physiological proof in vivo existed to support the free-radical theory, especially for polyphenols.[229] Consequently, the ORAC method, derived only from in vitro experiments, is no longer considered relevant to human diets or biology.

Alternative in vitro measurements include the Folin-Ciocalteu reagent, and the Trolox equivalent antioxidant capacity assay.[230]

History

As part of their adaptation from marine life, terrestrial plants began producing non-marine antioxidants such as ascorbic acid (vitamin C), polyphenols and tocopherols. The evolution of angiosperm plants between 50 and 200 million years ago resulted in the development of many antioxidant pigments – particularly during the Jurassic period – as chemical defences against reactive oxygen species that are byproducts of photosynthesis.[231] Originally, the term antioxidant specifically referred to a chemical that prevented the consumption of oxygen. In the late 19th and early 20th centuries, extensive study concentrated on the use of antioxidants in important industrial processes, such as the prevention of metal corrosion, the vulcanization of rubber, and the polymerization of fuels in the fouling of internal combustion engines.[232]

Early research on the role of antioxidants in biology focused on their use in preventing the oxidation of unsaturated fats, which is the cause of rancidity.[233] Antioxidant activity could be measured simply by placing the fat in a closed container with oxygen and measuring the rate of oxygen consumption. However, it was the identification of vitamins A, C, and E as antioxidants that revolutionized the field and led to the realization of the importance of antioxidants in the biochemistry of living organisms.[234][235] The possible mechanisms of action of antioxidants were first explored when it was recognized that a substance with anti-oxidative activity is likely to be one that is itself readily oxidized.[236] Research into how vitamin E prevents the process of lipid peroxidation led to the identification of antioxidants as reducing agents that prevent oxidative reactions, often by scavenging reactive oxygen species before they can damage cells.[237]

Human nature

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