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Wednesday, June 17, 2015

Arachnid


From Wikipedia, the free encyclopedia
 
Arachnids

Arachnids is a class (Arachnida) of joint-legged invertebrate animals (arthropods), in the subphylum Chelicerata. All arachnids have eight legs, although the front pair of legs in some species has converted to a sensory function, while in other species, different appendages can grow large enough to take on the appearance of extra pairs of legs. The term is derived from the Greek word ἀράχνη (aráchnē), meaning "spider".[1]

Almost all extant arachnids are terrestrial. However, some inhabit freshwater environments and, with the exception of the pelagic zone, marine environments as well. They comprise over 100,000 named species, including spiders, scorpions, harvestmen, ticks, mites, and solifuges.[2]

Morphology


Basic characteristics of arachnids include four pairs of legs (1) and a body divided into two tagmata: the cephalothorax (2) and the abdomen (3)

Almost all adult arachnids have eight legs, and arachnids may be easily distinguished from insects by this fact, since insects have six legs. However, arachnids also have two further pairs of appendages that have become adapted for feeding, defense, and sensory perception. The first pair, the chelicerae, serve in feeding and defense. The next pair of appendages, the pedipalps, have been adapted for feeding, locomotion, and/or reproductive functions. In Solifugae, the palps are quite leg-like, so that these animals appear to have ten legs. The larvae of mites and Ricinulei have only six legs; a fourth pair usually appears when they moult into nymphs. However, mites are variable: as well as eight, there are adult mites with six or even four legs.[3]

Arachnids are further distinguished from insects by the fact they do not have antennae or wings. Their body is organized into two tagmata, called the prosoma, or cephalothorax, and the opisthosoma, or abdomen. The cephalothorax is derived from the fusion of the cephalon (head) and the thorax, and is usually covered by a single, unsegmented carapace. The abdomen is segmented in the more primitive forms, but varying degrees of fusion between the segments occur in many groups. It is typically divided into a preabdomen and postabdomen, although this is only clearly visible in scorpions, and in some orders, such as the Acari, the abdominal sections are completely fused.[4]

Like all arthropods, arachnids have an exoskeleton, and they also have an internal structure of cartilage-like tissue, called the endosternite, to which certain muscle groups are attached. The endosternite is even calcified in some Opiliones.[5]

Locomotion

Most arachnids lack extensor muscles in the distal joints of their appendages. Spiders and whipscorpions extend their limbs hydraulically using the pressure of their hemolymph.[6] Solifuges and some harvestmen extend their knees by the use of highly elastic thickenings in the joint cuticle.[6] Scorpions, pseudoscorpions and some harvestmen have evolved muscles that extend two leg joints (the femur-patella and patella-tibia joints) at once.[7][8] The equivalent joints of the pedipalps of scorpions though, are extended by elastic recoil.[9]

Physiology

There are characteristics that are particularly important for the terrestrial lifestyle of arachnids, such as internal respiratory surfaces in the form of tracheae, or modification of the book gill into a book lung, an internal series of vascular lamellae used for gas exchange with the air.[10] While the tracheae are often individual systems of tubes, similar to those in insects, ricnuleids, pseudoscorpions, and some spiders possess sieve tracheae, in which several tubes arise in a bundle from a small chamber connected to the spiracle. This type of tracheal system has almost certainly evolved from the book lungs, and indicates that the tracheae of arachnids are not homologous with those of insects.[11]
Further adaptations to terrestrial life are appendages modified for more efficient locomotion on land, internal fertilisation, special sensory organs, and water conservation enhanced by efficient excretory structures as well as a waxy layer covering the cuticle.

The excretory glands of arachnids include up to four pairs of coxal glands along the side of the prosoma, and one or two pairs of Malpighian tubules, emptying into the gut. Many arachnids have only one or the other type of excretory gland, although several do have both. The primary nitrogenous waste product in arachnids is guanine.[11]

Arachnid blood is variable in composition, depending on the mode of respiration. Arachnids with an efficient tracheal system do not need to transport oxygen in the blood, and may have a reduced circulatory system. In scorpions and some spiders, however, the blood contains haemocyanin, a copper-based pigment with a similar function to haemoglobin in vertebrates. The heart is located in the forward part of the abdomen, and may or may not be segmented. Some mites have no heart at all.[11]

Diet and digestive system

Arachnids are mostly carnivorous, feeding on the pre-digested bodies of insects and other small animals. Only in the harvestmen and among mites, such as the house dust mite, is there ingestion of solid food particles, and thus exposure to internal parasites,[12] although it is not unusual for spiders to eat their own silk. Several groups secrete venom from specialized glands to kill prey or enemies. Several mites are parasites, some of which are carriers of disease.

Arachnids produce digestive juices in their stomachs, and use their pedipalps and chelicerae to pour them over their dead prey. The digestive juices rapidly turn the prey into a broth of nutrients, which the arachnid sucks into a pre-buccal cavity located immediately in front of the mouth. Behind the mouth is a muscular, sclerotised pharynx, which acts as a pump, sucking the food through the mouth and on into the oesophagus and stomach. In some arachnids, the oesophagus also acts as an additional pump.

The stomach is tubular in shape, with multiple diverticula extending throughout the body. The stomach and its diverticula both produce digestive enzymes and absorb nutrients from the food. It extends through most of the body, and connects to a short sclerotised intestine and anus in the hind part of the abdomen.[11]

Senses

Arachnids have two kinds of eyes, the lateral and median ocelli. The lateral ocelli evolved from compound eyes and may have a tapetum, which enhances the ability to collect light. With the exception of scorpions, which can have up to five pairs of lateral ocelli, there are never more than three pairs present. The median ocelli develop from a transverse fold of the ectoderm. The ancestors of modern arachnids probably had both types, but modern ones often lack one type or the other.[12] The cornea of the eye also acts as a lens, and is continuous with the cuticle of the body. Beneath this is a transparent vitreous body, and then the retina and, if present, the tapetum. In most arachnids, the retina probably does not have enough light sensitive cells to allow the eyes to form a proper image.[11]

In addition to the eyes, almost all arachnids have two other types of sensory organs. The most important to most arachnids are the fine sensory hairs that cover the body and give the animal its sense of touch. These can be relatively simple, but many arachnids also possess more complex structures, called trichobothria.

Finally, slit sense organs are slit-like pits covered with a thin membrane. Inside the pit, a small hair touches the underside of the membrane, and detects its motion. Slit sense organs are believed to be involved in proprioception, and possibly also hearing.[11]

Reproduction

Arachnids may have one or two gonads, which are located in the abdomen. The genital opening is usually located on the underside of the second abdominal segment. In most species, the male transfers sperm to the female in a package, or spermatophore. Complex courtship rituals have evolved in many arachnids to ensure the safe delivery of the sperm to the female.[11]
Arachnids usually lay yolky eggs, which hatch into immatures that resemble adults. Scorpions, however, are either ovoviviparous or viviparous, depending on species, and bear live young.

Systematics


Trilobita


Xiphosura



Eurypterida

Arachnida


Scorpiones



Opiliones



Pseudoscorpiones


Solifugae







Acari



Palpigradi


Pycnogonida







Trigonotarbida


Ricinulei




Araneae



Amblypygi



Thelyphonida


Schizomida









Phylogeny of the Chelicerata (after Giribet et al. 2002)
It is estimated that 98,000 arachnid species have been described, and that there may be up to 600,000 in total.[13]

Acari


Acari or Acarina is a taxon of arachnids that contains mites and ticks. Its fossil history goes back to the Devonian period, although there is also a questionable Ordovician record. The Devonian period was the time frame in which certain species of animals developed legs. In most modern treatments, the Acari is considered a subclass of Arachnida and is composed of two or three orders or superorders: Acariformes, Parasitiformes, and Opilioacariformes. Most acarines are minute to small (e.g. 0.080–1.00 mm), but the giants of the Acari (some ticks and red velvet mites) may reach lengths of 10–20 mm. It is estimated that over 50,000 species have been described (as of 1999) and that a million or more species are currently living.[citation needed] The study of mites and ticks is called acarology.[14]

Only the faintest traces of primary segmentation remain in mites, the prosoma and opisthosoma being insensibly fused, and a region of flexible cuticle (the cirumcapitular furrow) separates the chelicerae and pedipalps from the rest of the body. This anterior body region is called the gnathosoma (or capitulum) and is also found in the Ricinulei. The remainder of the body is called the idiosoma and is unique to mites. Most adult mites have four pairs of legs, like other arachnids, but some have fewer. For example, gall mites like Phyllocoptes variabilis (superfamily Eriophyioidea) have a wormlike body with only two pairs of legs; some parasitic mites have only one or three pairs of legs in the adult stage. Larval and prelarval stages have a maximum of three pairs of legs; adult mites with only three pairs of legs may be called 'larviform'.

Acarine ontogeny consists of an egg, a prelarval stage (often absent), a larval stage (hexapod except in Eriophyoidea, which have only two pairs of legs), and a series of nymphal stages. Larvae (and prelarvae) have a maximum of three pairs of legs (legs are often reduced to stubs or absent in prelarvae); the fourth pair of legs is added at the first nymphal stage.

Acarines live in practically every habitat, and include aquatic (freshwater and sea water) and terrestrial species. They outnumber other arthropods in the soil organic matter and detritus. Many are parasitic, and they affect both vertebrates and invertebrates. Most parasitic forms are external parasites, while the free living forms are generally predaceous and may even be used to control undesirable arthropods. Others are detritivores that help to break down forest litter and dead organic matter such as skin cells. Others still are plant feeders and may damage crops. Damage to crops is perhaps the most costly economic effect of mites, especially by the spider mites and their relatives (Tetranychoidea), earth mites (Penthaleidae), thread-footed mites (Tarsonemidae) and the gall and rust mites (Eriophyoidea). Some parasitic forms affect humans and other mammals, causing damage by their feeding, and can even be vectors of diseases such as scrub typhus and rickettsial pox. A well-known effect of mites on humans is their role as an allergen and the stimulation of asthma in people affected by the respiratory disease. The use of predatory mites (e.g. Phytoseiidae) in pest control and herbivorous mites that attack weeds is also important. An unquantified, but major positive contribution of the Acari is their normal functioning in ecosystems, especially their roles in the decomposer subsystem.[14]

Amblypygi


An amblypygid

Amblypygids are also known as tailless whip scorpions or cave spiders. Approximately 5 families, 17 genera and 136 species have been described. They are found in tropical and subtropical regions worldwide. Some species are subterranean; many are nocturnal. During the day, they may hide under logs, bark, stones, or leaves. They prefer a humid environment. Amblypygids may range from 5 to 40 mm. Their bodies are broad and highly flattened and the first pair of legs (the first walking legs in most arachnid orders) are modified to act as sensory organs. (Compare solifugids, uropygids, and schizomids.) These very thin modified legs can extend several times the length of body.
They have no silk glands or venomous fangs, but can have prominent pincer-like pedipalps. Amblypygids often move about sideways on their six walking legs, with one "whip" pointed in the direction of travel while the other probes on either side of them. Prey are located with these "whips", captured with pedipalps, then torn to pieces with chelicerae. Fossilised amblypygids have been found dating back to the Carboniferous period.

Amblypygids, particularly the species Phrynus marginemaculatus and Damon diadema, are thought to be one of the few species of arachnids that show signs of social behavior. Research conducted at Cornell University by entomologists suggests that mother amblypygids comfort their young by gently caressing the offspring with her feelers. Further, when two or more siblings were placed in an unfamiliar environment, such as a cage, they would seek each other out and gather back in a group.[15]

Araneae


Araneae, or spiders, are the most familiar of the arachnids, and the most species-rich with around 40,000 described species.[16] All spiders produce silk, a thin, strong protein strand extruded by the spider from spinnerets most commonly found on the end of the abdomen. Many species use it to trap insects in webs, although there are many species that hunt freely. Silk can be used to aid in climbing, form smooth walls for burrows, build egg sacs, wrap prey, temporarily hold sperm, and even fly, among other applications.

All spiders except those in the families Uloboridae and Holarchaeidae, and in the suborder Mesothelae (together about 350 species) can inject venom to protect themselves or to kill and liquefy prey. Only about 200 species, however, have bites that can pose health problems to humans.[17] Many larger species' bites may be painful, but will not produce lasting health concerns.

Spiders are found all over the world, from the tropics to the Arctic, with some extreme species even living underwater in silken domes that they supply with air,[18] and on the tops of the highest mountains.

Haptopoda

Haptopoda is an extinct order known exclusively from a few specimens from the Upper Carboniferous of the United Kingdom. It is monotypic, i.e. has only one species: Plesiosiro madeleyi Pocock 1911. Relationships with other arachnids are obscure, but closest relatives may be the Amblypygi, Thelyphonida and Schizomida of the tetrapulmonate clade[19] - a result which has been reflected in cladistic analyses.[20]

Opiliones


Male Opilio canestrinii cleaning its legs

Opiliones (formerly Phalangida, and better known as "harvestmen" or "daddy longlegs") are arachnids that are harmless to people and are known for their exceptionally long walking legs, compared to their body size. As of December 2011, over 6,500 species of harvestmen have been discovered worldwide.[21] The order Opiliones is divided into five suborders: Cyphophthalmi, Eupnoi, Dyspnoi, Laniatores, and the recently described Tetrophthalmi.[22] Well-preserved fossils have been found in the 410-million year old Rhynie cherts of Scotland and 305-million-year-old rocks from France; they look surprisingly modern, suggesting that the basic structure of the harvestmen has not changed much since then.[23][24]

The difference between harvestmen and spiders is that in harvestmen the two main body sections (the abdomen or opisthosoma with ten segments and the cephalothorax or prosoma) are nearly joined, so that they appear to be one oval structure. In more advanced species, the first five abdominal segments are often fused into a dorsal shield called the scutum, which is normally fused with the carapace. Sometimes this shield is only present in males. The two hindmost abdominal segments may be reduced or separated in the middle on the surface to form two plates lying next to each other. The second pair of legs is longer than the others and works as antennae. They have a single pair of eyes in the middle of their heads, oriented sideways. They have a pair of prosomatic scent glands that secrete a peculiar smelling fluid when disturbed. Harvestmen do not have spinnerets and do not possess poison glands, posing absolutely no danger to humans. They breathe through tracheae. Between the base of the fourth pair of legs and the abdomen is a pair of spiracles, one opening on each side. In more active species, spiracles are also found upon the tibia of the legs. They have a gonopore on the ventral cephalothorax, and copulation is direct, as the male has a penis (while the female has an ovipositor).

Typical body length does not exceed 7 millimetres (0.28 in) even in the largest species. However, leg span is much larger and can exceed 160 mm (6.3 in). Most species live for a year. Many species are omnivorous, eating primarily small insects and all kinds of plant material and fungi; some are scavengers of the decays of any dead animal, bird dung and other fecal material. They are mostly nocturnal and coloured in hues of brown, although there are a number of diurnal species that have vivid patterns in yellow, green and black with varied reddish and blackish mottling and reticulation.

Palpigradi

Palpigradi, commonly known as "microwhip scorpions", are tiny cousins of the uropygid, or whip scorpion, no more than 3 mm in length. They have a thin, pale, segmented carapace that terminates in a whip-like flagellum, made up of 15 segments. The carapace is divided into two plates between the third and fourth leg set. They have no eyes. Some species have three pairs of book lungs, while others have no respiratory organs at all.[25] Approximately 80 species of Palpigradi have been described worldwide, in the families Eukoeneniidae and Prokoeneniidae, with a total of seven genera.
They are believed to be predators like their larger relatives, feeding on minuscule insects in their habitat. Their mating habits are unknown, except that they lay only a few relatively large eggs at a time. Microwhip scorpions need a damp environment to survive, and they always hide from light, so they are commonly found in the moist earth under buried stones and rocks. They can be found on every continent, except in Arctic and Antarctic regions.

Phalangiotarbida

Phalangiotarbi is an extinct arachnid order known exclusively from the Palaeozoic (Devonian to Permian) of Europe and North America.
The affinities of phalangiotarbids are obscure, with most authors favouring affinities with Opiliones (harvestmen)[20] and/or Acari (mites and ticks). Phalangiotarbida has been recently proposed to be sister group to (Palpigradi+Tetrapulmonata): the taxon Megoperculata sensu Shultz (1990).[26]

Pseudoscorpions


A pseudoscorpion on a printed page

Pseudoscorpions are small arthropods with a flat, pear-shaped body and pincers that resemble those of scorpions. They range from 2 to 8 mm (0.079 to 0.315 in) long.[27] The opisthosoma is made up of twelve segments, each guarded by plate-like tergites above and sternites below. The abdomen is short and rounded at the rear, rather than extending into a segmented tail and stinger like true scorpions. The colour of the body can be yellowish-tan to dark-brown, with the paired claws often a contrasting colour. They may have two, four or no eyes. They have two very long pedipalps with palpal chelae (pincers) that strongly resemble the pincers found on a scorpion. The pedipalps generally consist of an immobile "hand" and "finger", with a separate movable finger controlled by an adductor muscle. A venom gland and duct are usually located in the mobile finger; the poison is used to capture and immobilise the pseudoscorpion's prey. During digestion, pseudoscorpions pour a mildly corrosive fluid over the prey, then ingest the liquefied remains. Pseudoscorpions spin silk from a gland in their jaws to make disk-shaped cocoons for mating, molting, or waiting out cold weather. Another trait they share with their closest relatives, the spiders, is breathing through spiracles. Most spiders have one pair of spiracles, and one of book lungs, but pseudoscorpions do not have book lungs.

There are more than 2,000 species of pseudoscorpions recorded. They range worldwide, even in temperate to cold regions, but have their most dense and diverse populations in the tropics and subtropics. The fossil record of pseudoscorpions dates back over 380 million years, to the Devonian period, near the time when the first land-animal fossils appear.

During the elaborate mating dance, the male of some pseudoscorpion species pulls a female over a spermatophore previously laid upon a surface.[28] In other species, the male also pushes the sperm into the female genitals using the forelegs.[29] The female carries the fertilised eggs in a brood pouch attached to her abdomen, and the young ride on the mother for a short time after they hatch.[27] Up to two dozen young are hatched in a single brood; there may be more than one brood per year. The young go through three molts over the course of several years before reaching adulthood. Adult pseudoscorpions live 2 to 3 years. They are active in the warm months of the year, overwintering in silken cocoons when the weather grows cold.

Pseudoscorpions are generally beneficial to humans since they prey on clothes moth larvae, carpet beetle larvae, booklice, ants, mites, and small flies. They are small and inoffensive, and are rarely seen due to their size. They usually enter the home by "riding along" with larger insects (known as phoresy), or are brought in with firewood. They are often observed in bathrooms or laundry rooms, since they seek humidity. They may sometimes be found feeding on mites under the wing covers of certain beetles.

Ricinulei

Ricinulei (hooded tickspiders) are 5–10 mm long. Their most notable feature is a "hood" that can be raised and lowered over the head; when lowered, it covers the mouth and the chelicerae. Ricinulei have no eyes. The pedipalps end in pincers that are small relative to their bodies, when compared to those of the related orders of scorpions and pseudoscorpions. The heavy-bodied abdomen forms a narrow pedicel, or waist, where it attaches to the prosoma. In males, the third pair of legs are modified to form copulatory organs. Malpighian tubules and a pair of coxal glands make up the excretory system. They have no lungs, as gas exchange takes place through the trachea.
Ricinulei are predators, feeding on other small arthropods. Little is known about their mating habits; the males have been observed using their modified third leg to transfer a spermatophore to the female. The eggs are carried under the mother's hood, until the young hatch into six-legged "larva", which later molt into their adult forms. Ricinulei require moisture to survive. Approximately 57 species of ricinuleids have been described worldwide, all in a single family that contains three genera.

Schizomida

Schizomida is an order of arachnids that tend to live in the top layer of soils. Schizomids present the prosoma covered by a large protopeltidium and smaller, paired, mesopeltidia and metapeltidia. There are no eyes. The opisthosoma is a smooth oval of 12 recognisable somites. The first is reduced and forms the pedicel. The last three are much constricted, forming the pygidium. The last somite bears the flagellum, which in this order is short and consists of not more than four segments.
The name means "split or cleaved middle", referring to the way the cephalothorax is divided into two separate plates. Like the related orders Uropygi, Amblypygi, and Solpugida, the schizomids use only six legs for walking, having modified their first two legs to serve as sensory organs. They also have large well-developed pedipalps (pincers) just behind the sensory legs.

Scorpions


Scorpions are characterised by a metasoma (tail) comprising six segments, the last containing the scorpion's anus and bearing the telson (the sting). The telson, in turn, consists of the vesicle, which holds a pair of venom glands and the hypodermic aculeus, the venom-injecting barb. The abdomen's front half, the mesosoma, is made up of six segments. The first segment contains the sexual organs as well as a pair of vestigial and modified appendages forming a structure called the genital operculum. The second segment bears a pair of featherlike sensory organs known as the pectines; the final four segments each contain a pair of book lungs. The mesosoma is armored with chitinous plates, known as tergites on the upper surface and sternites on the lower surface.

The cuticle of scorpions is covered with hairs in some places that act like balance organs. An outer layer that makes them fluorescent green under ultraviolet light is called the hyaline layer. Newly molted scorpions do not glow until after their cuticle has hardened. The fluorescent hyaline layer can be intact in fossil rocks that are hundreds of millions of years old.

Scorpions are opportunistic predators of small arthropods and insects. They use their chela (pincers) to catch the prey initially. Depending on the toxicity of their venom and size of their claws, they will then either crush the prey or inject it with neurotoxic venom. The neurotoxins consist of a variety of small proteins as well as sodium and potassium cations, which serve to interfere with neurotransmission in the victim. Scorpions use their venom to kill or paralyze their prey so that it can be eaten; in general, it is fast acting, allowing for effective prey capture.
Scorpion venoms are optimised for action on other arthropods and therefore most scorpions are relatively harmless to humans; stings produce only local effects (such as pain, numbness or swelling). A few scorpion species, however, mostly in the family Buthidae, can be dangerous to humans. The scorpion that is responsible for the most human deaths is the Androctonus australis, or fat-tailed scorpion of North Africa. The toxicity of A. australis's venom is roughly half that of the deathstalker (Leiurus quinquestriatus), but since A. australis injects quite a bit more venom into its prey, it is the most deadly to humans. Human deaths normally occur in the young, elderly, or infirm; scorpions are generally unable to deliver enough venom to kill healthy adults. Some people, however, may be allergic to the venom of some species, in which case the scorpion's sting can more likely kill. A primary symptom of a scorpion sting is numbing at the injection site, sometimes lasting for several days. It has been found that scorpions have two types of venom: a translucent, weaker venom designed to stun only, and an opaque, more potent venom designed to kill heavier threats.[30][31]

Unlike the majority of Arachnida species, scorpions are viviparous. The young are born one by one, and the brood is carried about on its mother's back until the young have undergone at least one moult.[32] The young generally resemble their parents, requiring between five and seven moults to reach maturity. Scorpions have quite variable lifespans and the lifespan of most species is not known. The age range appears to be approximately 4–25 years (25 years being the maximum reported life span in the giant desert hairy scorpion, Hadrurus arizonensis). They are nocturnal and fossorial, finding shelter during the day in the relative cool of underground holes or undersides of rocks and coming out at night to hunt and feed. Scorpions prefer to live in areas where the temperature is 20–37 °C (68–99 °F), but may survive in the temperature range of 14–45 °C (57–113 °F).[33][34]

Scorpions have been found in many fossil records, including coal deposits from the Carboniferous Period and in marine Silurian deposits. They are thought to have existed in some form since about 450 to 425 million years ago. They are believed to have an oceanic origin, with gills and a claw-like appendage that enabled them to hold onto rocky shores or seaweed.

Solifugae


Solifugae is a group of 900 species of arachnids, commonly known as camel spiders, wind scorpions, and sun spiders. The name derives from Latin, and means those that flee from the sun. Most Solifugae live in tropical or semitropical regions where they inhabit warm and arid habitats, but some species have been known to live in grassland or forest habitats. The most distinctive feature of Solifugae is their large chelicerae. Each of the two chelicerae are composed of two articles forming a powerful pincer; each article bears a variable number of teeth. Males in all families but Eremobatidae possess a flagellum on the basal article of the chelicera. Solifugae also have long pedipalps, which function as sense organs similar to insects' antennae and give the appearance of the two extra legs. Pedipalps terminate in reversible adhesive organs.

Solifugae are carnivorous or omnivorous, with most species feeding on termites, darkling beetles, and other small arthropods; however, solifugae have been videotaped consuming larger prey, such as lizards. Prey is located with the pedipalps and killed and cut into pieces by the chelicerae. The prey is then liquefied and the liquid ingested through the pharynx. Reproduction can involve direct or indirect sperm transfer; when indirect, the male emits a spermatophore on the ground and then inserts it with his chelicerae in the female's genital pore.

Trigonotarbida

The Order Trigonotarbida is an extinct group of arachnids whose fossil record extends from the Silurian to the Lower Permian.[35] They are known from several localities in North Asia, North America and Argentina. They superficially resemble spiders, to which they were clearly related - most cladistic analyses recover them in a clade with Thelyphonida, Schizomida, Amblypygi and Araneae.[20]
These early arachnids seem to have been adapted to stalking prey on the ground.[36] They have been found within the very structure of ground-dwelling plants, possibly where they hid to await their prey. Trigonotarbids are currently among the oldest known land arthropods. They lack silk glands on the opisthosoma and cheliceral poison glands, and most likely represented independent offshoots of the Arachnida.

Thelyphonida


A whip scorpion

The Thelyphonida (formerly Uropygida), commonly known as vinegarroons or whip scorpions, range from 25 to 85 mm in length; the largest species, of the genus Mastigoproctus, reaches 85 mm (3.3 in). Like the related orders Schizomida, Amblypygi, and Solifugae, the vinegarroons use only six legs for walking, having modified their first two legs to serve as antennae-like sensory organs. Many species also have very large scorpion-like pedipalps (pincers). They have one pair of eyes at the front of the cephalothorax and three on each side of the head. Whip scorpions have no poison glands, but they do have glands near the rear of their abdomen that can spray a combination of acetic acid and octanoic acid when they are bothered. Other species spray formic acid or chlorine. As of 2006, over 100 species have been described worldwide.

Whip scorpions are carnivorous, nocturnal hunters feeding mostly on insects but sometimes on worms and slugs. The prey is crushed between special teeth on the inside of the trochanters (the second segment of the leg) of the front legs. They are valuable in controlling cockroach and cricket populations.

Males secrete a sperm sac, which is transferred to the female. Up to 35 eggs are laid in a burrow, within a mucous membrane that preserves moisture. Mothers stay with the eggs and do not eat. The white young that hatch from the eggs climb onto their mother's back and attach themselves there with special suckers. After the first molt, they look like miniature whip scorpions, and leave the burrow; the mother dies soon after. The young grow slowly, going through three molts in about three years before reaching adulthood.

Vinegarroons are found in tropical and subtropical areas worldwide, usually in underground burrows that they dig with their pedipalps. They may also burrow under logs, rotting wood, rocks, and other natural debris. They enjoy humid, dark places and avoid the light.

Tuesday, June 2, 2015

Evolution of tetrapods



From Wikipedia, the free encyclopedia

In Late Devonian vertebrate speciation, descendants of pelagic lobe-finned fish — like Eusthenopteron — exhibited a sequence of adaptations: *Panderichthys, suited to muddy shallows *Tiktaalik with limb-like fins that could take it onto land *Early tetrapods in weed-filled swamps, such as: **Acanthostega, which had feet with eight digits **Ichthyostega with limbs Descendants also included pelagic lobe-finned fish such as coelacanth species.

The evolution of tetrapods began about 395 million years ago in the Devonian Period with the earliest tetrapods derived from neither ray-finned nor lobe-finned fishes.[1] Tetrapods are categorized as a biological superclass, Tetrapoda, which includes all living and extinct amphibians, reptiles, birds, and mammals. While most species today are terrestrial, little evidence supports the idea that any of the earliest tetrapods could move about on land, as their limbs could not have held their midsections off the ground and the known trackways do not indicate they dragged their bellies around. Presumably, the tracks were made by animals walking along the bottoms of shallow bodies of water.[2] The specific aquatic ancestors of the tetrapods, and the process by which land colonization occurred, remain unclear, and are areas of active research and debate among palaeontologists at present.

Amphibians today generally remain semiaquatic, living the first stage of their lives as fish-like tadpoles. Several groups of tetrapods, such as the snakes and cetaceans, have lost some or all of their limbs. In addition, many tetrapods have returned to partially aquatic or fully aquatic lives throughout the history of the group (modern examples of fully aquatic tetrapods include cetaceans and sirenians). The first returns to an aquatic lifestyle may have occurred as early as the Carboniferous Period[3] whereas other returns occurred as recently as the Cenozoic, as in cetaceans, pinnipeds,[4] and several modern amphibians.[5]

The change from a body plan for breathing and navigating in water to a body plan enabling the animal to move on land is one of the most profound evolutionary changes known.[6] It is also one of the best understood, largely thanks to a number of significant transitional fossil finds in the late 20th century combined with improved phylogenetic analysis.[7]

Origin

Evolution of fish

The Devonian period is traditionally known as the "Age of Fish", marking the diversification of numerous extinct and modern major fish groups.[8] Among them were the early bony fishes, who diversified and spread in freshwater and brackish environments at the beginning of the period. The early types resembled their cartilaginous ancestors in many features of their anatomy, including a shark-like tailfin, spiral gut, large pectoral fins stiffened in front by skeletal elements and a largely unossified axial skeleton.[9]
They did, however, have certain traits separating them from cartilaginous fishes, traits that would become pivotal in the evolution of terrestrial forms. With the exception of a pair of spiracles, the gills did not open singly to the exterior as they do in sharks; rather, they were encased in a gill chamber stiffened by membrane bones and covered by a bony operculum, with a single opening to the exterior. The cleithrum bone, forming the posterior margin of the gill chamber, also functioned as anchoring for the pectoral fins. The cartilaginous fishes do not have such an anchoring for the pectoral fins. This allowed for a movable joint at the base of the fins in the early bony fishes, and would later function in a weight bearing structure in tetrapods. As part of the overall armour of rhomboid cosmin scales, the skull had a full cover of dermal bone, constituting a skull roof over the otherwise shark-like cartilaginous inner cranium. Importantly, they also had a swim bladder/lung,[10] a feature lacking in sharks and rays.

Lungs before land

The lung/swim bladder originated as an outgrowth of the gut, forming a gas-filled bladder above the digestive system. In its primitive form, the air bladder was open to the alimentary canal, a condition called physostome and still found in many fish.[11] The primary function is not entirely certain. One consideration is buoyancy. The heavy scale armour of the early bony fishes would certainly weigh the animals down. In cartilaginous fishes, lacking a swim bladder, the open sea sharks need to swim constantly to avoid sinking into the depths, the pectoral fins providing lift.[12] Another factor is oxygen consumption. Ambient oxygen was relatively low in the early Devonian, possibly about half of modern values.[13] Per unit volume, there is much more oxygen in air than in water, and vertebrates are active animals with a high energy requirement compared to invertebrates of similar sizes.[14][15] The Devonian saw increasing oxygen levels which opened up new ecological niches by allowing groups able to exploit the additional oxygen to develop into active, large-bodied animals.[13] Particularly in tropical swampland habitats, atmospheric oxygen is much more stable, and may have prompted a reliance of lungs rather than gills for primary oxygen uptake.[16][17] In the end, both buoyancy and breathing may have been important, and some modern physostome fishes do indeed use their bladders for both.

To function in gas exchange, lungs required a blood supply. In cartilaginous fishes and teleosts, the heart lies low in the body and pumps blood forward through the ventral aorta, which splits up in a series of paired aortic arches, each corresponding to a gill arch.[18] The aortic arches then merge above the gills to form a dorsal aorta supplying the body with oxygenated blood. In lungfishes, bowfin and bichirs, the swim bladder is supplied with blood by paired pulmonary arteries branching off from the hindmost (6th) aortic arch.[19] The same basic pattern is found in the lungfish Protopterus and in terrestrial salamanders, and was probably the pattern found in the tetrapods' immediate ancestors as well as the first tetrapods.[20] In most other bony fishes the swim bladder is supplied with blood by the dorsal aorta.[19]

External and internal nares

The nostrils in most bony fish differ from those of tetrapods. Normally, bony fish have four nares (nasal openings), one naris behind the other on each side. As the fish swims, water flows into the forward pair, across the olfactory tissue, and out through the posterior openings. This is true not only of ray-finned fish but also of the coelacanth, a fish included in the Sarcopterygii, the group that also includes the tetrapods. In contrast, the tetrapods have only one pair of nares externally but also sport a pair of internal nares, called choanae, allowing them to draw air through the nose. Lungfish are also sarcopterygians with internal nostrils, but these are sufficiently different from tetrapod choanae that they have long been recognized as an independent development.[21]

The evolution of the tetrapods' internal nares was hotly debated in the 20th century. The internal nares could be one set of the external ones (usually presumed to be the posterior pair) that have migrated into the mouth, or the internal pair could be a newly evolved structure. To make way for a migration, however, the two tooth-bearing bones of the upper jaw, the maxilla and the premaxilla, would have to separate to let the nostril through and then rejoin; until recently, there was no evidence for a transitional stage, with the two bones disconnected. Such evidence is now available: a small lobe-finned fish called Kenichthys, found in China and dated at around 395 million years old, represents evolution "caught in mid-act", with the maxilla and premaxilla separated and an aperture—the incipient choana—on the lip in between the two bones.[22] Kenichthys is more closely related to tetrapods than is the coelacanth,[23] which has only external nares; it thus represents an intermediate stage in the evolution of the tetrapod condition. The reason for the evolutionary movement of the posterior nostril from the nose to lip, however, is not well understood.

Into the shallows


Devonian fishes, including an early shark Cladoselache, Eusthenopteron and other lobe-finned fishes, and the placoderm Bothriolepis (Joseph Smit, 1905).

The relatives of Kenichthys soon established themselves in the waterways and brackish estuaries and became the most numerous of the bony fishes throughout the Devonian and most of the Carboniferous. The basic anatomy of group is well known thanks to the very detailed work on Eusthenopteron by Erik Jarvik in the second half of the 20th century.[24] The bones of the skull roof were broadly similar to those of early tetrapods and the teeth had an infolding of the enamel similar to that of labyrinthodonts. The paired fins had a build with bones distinctly homologous to the humerus, ulna, and radius in the fore-fins and to the femur, tibia, and fibula in the pelvic fins.[25]

There were a number of families: Rhizodontida, Canowindridae, Elpistostegidae, Megalichthyidae, Osteolepidae and Tristichopteridae.[26] Most were open-water fishes, and some grew to very large sizes; adult specimens are several meters in length.[27] The Rhizodontid Rhizodus is estimated to have grown to 7 meters (23 feet), making it the largest freshwater fish known.[28]

While most of these were open-water fishes, one group, the Elpistostegalians, adapted to life in the shallows. They evolved flat bodies for movement in very shallow water, and the pectoral and pelvic fins took over as the main propulsion organs. Most median fins disappeared, leaving only a protocercal tailfin. Since the shallows were subject to occasional oxygen deficiency, the ability to breath atmospheric air with the swim bladder became increasingly important.[6] The spiracle became large and prominent, enabling these fishes to draw air.

Skull morphology

The tetrapods have their root in the early Devonian tetrapodomorph fish.[29] Primitive tetrapods developed from an osteolepid tetrapodomorph lobe-finned fish (sarcopterygian-crossopterygian), with a two-lobed brain in a flattened skull. The coelacanth group represents marine sarcopterygians that never acquired these shallow-water adaptations.
The sarcopterygians apparently took two different lines of descent and are accordingly separated into two major groups: the Actinistia (including the coelacanths) and the Rhipidistia (which include extinct lines of lobe-finned fishes that evolved into the lungfish and the tetrapodomorphs).

From fins to feet


Stalked fins like those of the bichirs can be used for terrestrial movement

The oldest known tetrapodomorph is Kenichthys from China, dated at around 395 million years old. Two of the earliest tetrapodomorphs, dating from 380 Ma, were Gogonasus and Panderichthys.[30] They had choanae and used their fins as to move through tidal channels and shallow waters choked with dead branches and rotting plants.[31] Their fins could have been used to attach themselves to plants or similar while they were lying in ambush for prey. The universal tetrapod characteristics of front limbs that bend forward from the elbow and hind limbs that bend backward from the knee can plausibly be traced to early tetrapods living in shallow water. Pelvic bone fossils from Tiktaalik shows, if representative for early tetrapods in general, that hind appendages and pelvic-propelled locomotion originated in water before terrestrial adaptations.[32]

Another indication that feet and other tetrapod traits evolved while the animals were still aquatic is how they were feeding. They did not have the modifications of the skull and jaw that allowed them to swallow prey on land. Prey could be caught in the shallows, at the water's edge or on land, but had to be eaten in water where hydrodynamic forces from the expansion of their buccal cavity would force the food into their esophagus.[33]

It has been suggested that the evolution of the tetrapod limb from fins in lobe-finned fishes is related to expression of the HOXD13 gene or the loss of the proteins actinodin 1 and actinodin 2, which are involved in fish fin development.[34][35] Robot simulations suggest that the necessary nervous circuitry for walking evolved from the nerves governing swimming, utilizing the sideways oscillation of the body with the limbs primarily functioning as anchoring points and providing limited thrust.[36] This type of movement, as well as changes to the pectoral girdle a similar to those seen in the fossil record can be induced in bichirs by raising then out of water.[37]

A 2012 study using 3d reconstructions of Ichthyostega concluded that it was incapable of typical quadrupedal gaits. The limbs could not move alternately as they lacked the necessary rotary motion range. In addition, the hind limbs lacked the necessary pelvic musculature for hindlimb-driven land movement. Their most likely method of terrestrial locomotion is that of synchronous "crutching motions", similar to modern mudskippers.[38]

Denizens of the swamp

The first tetrapods probably evolved in coastal and brackish marine environments, and in shallow and swampy freshwater habitats.[39] Formerly, researchers thought the timing was towards the end of the Devonian. In 2010, this belief was challenged by the discovery of the oldest known tetrapod tracks, preserved in marine sediments of the southern coast of Laurasia, now Świętokrzyskie (Holy Cross) Mountains of Poland. They were made during the Eifelian stage at the end of the Middle Devonian. The tracks, some of which show digits, date to about 395 million years ago—18 million years earlier than the oldest known tetrapod body fossils.[40] Additionally, the tracks show that the animal was capable of thrusting its arms and legs forward, a type of motion that would have been impossible in tetrapodomorph fish like Tiktaalik. The animal that produced the tracks is estimated to have been up to 2.5 metres (8.2 ft) long with footpads up to 26 centimetres (10 in) wide, although most tracks are only 15 centimetres (5.9 in) wide.[41] The new finds suggest that the first tetrapods may have lived as opportunists on the tidal flats, feeding on marine animals that were washed up or stranded by the tide.[40] Currently, however, fish are stranded in significant numbers only at certain times of year, as in alewife spawning season; such strandings could not provide a significant supply of food for predators. There is no reason to suppose that Devonian fish were less prudent than those of today.[42] According to Melina Hale of University of Chicago, not all ancient trackways are necessarily made by early tetrapods, but could also be created by relatives of the tetrapods who used their fleshy appendages in a similar substrate-based locomotion.[43][44]

Palaeozoic tetrapods

Devonian tetrapods

Research by Jennifer A. Clack and her colleagues showed that the very earliest tetrapods, animals similar to Acanthostega, were wholly aquatic and quite unsuited to life on land. This is in contrast to the earlier view that fish had first invaded the land — either in search of prey (like modern mudskippers) or to find water when the pond they lived in dried out — and later evolved legs, lungs, etc.

By the late Devonian, land plants had stabilized freshwater habitats, allowing the first wetland ecosystems to develop, with increasingly complex food webs that afforded new opportunities. Freshwater habitats were not the only places to find water filled with organic matter and choked with plants with dense vegetation near the water's edge. Swampy habitats like shallow wetlands, coastal lagoons and large brackish river deltas also existed at this time, and there is much to suggest that this is the kind of environment in which the tetrapods evolved. Early fossil tetrapods have been found in marine sediments, and because fossils of primitive tetrapods in general are found scattered all around the world, they must have spread by following the coastal lines — they could not have lived in freshwater only.

One analysis from the University of Oregon suggests no evidence for the "shrinking waterhole" theory - transitional fossils are not associated with evidence of shrinking puddles or ponds - and indicates that such animals would probably not have survived short treks between depleted waterholes.[45] The new theory suggests instead that proto-lungs and proto-limbs were useful adaptations to negotiate the environment in humid, wooded floodplains.[46]

The Devonian tetrapods went through two major bottlenecks during what is known as the Late Devonian extinction; one at the end of the Frasnian stage, and one twice as large at the end of the following Famennian stage. These events of extinctions led to the disappearance of primitive tetrapods with fish-like features like Ichthyostega and their primary more aquatic relatives.[47] When tetrapods reappear in the fossil record again after the Devonian extinctions, the adult forms are all fully adapted to a terrestrial existence, with later species secondary adapted to an aquatic lifestyle.[48]

Excretion in tetrapods

The common ancestor of all present gnathostomes lived in freshwater, and later migrated back to the sea. To deal with the much higher salinity in sea water, they evolved the ability to turn the nitrogen waste product ammonia into harmless urea, storing it in the body to give the blood the same osmolarity as the sea water without poisoning the organism. This is the system currently found in cartilaginous fishes. Ray-finned fishes (Actinopterygii) later returned to freshwater and lost this ability, while the fleshy-finned fishes (Sarcopterygii) retained it. Since the blood of ray-finned fishes contains more salt than freshwater, they could simply get rid of ammonia through their gills.
When they finally returned to the sea again, they did not recover their old trick of turning ammonia to urea, and they had to evolve salt excreting glands instead. Lungfishes do the same when they are living in water, making ammonia and no urea, but when the water dries up and they are forced to burrow down in the mud, they switch to urea production. Like cartilaginous fishes, the coelacanth can store urea in its blood, as can the only known amphibians that can live for long periods of time in salt water (the toad Bufo marinus and the frog Rana cancrivora). These are traits they have inherited from their ancestors.

If early tetrapods lived in freshwater, and if they lost the ability to produce urea and used ammonia only, they would have to evolve it from scratch again later. Not a single species of all the ray-finned fishes living today has been able to do that, so it is not likely the tetrapods would have done so either. Terrestrial animals that can only produce ammonia would have to drink constantly, making a life on land impossible (a few exceptions exist, as some terrestrial woodlice can excrete their nitrogenous waste as ammonia gas). This probably also was a problem at the start when the tetrapods started to spend time out of water, but eventually the urea system would dominate completely. Because of this it is not likely they emerged in freshwater (unless they first migrated into freshwater habitats and then migrated onto land so shortly after that they still retained the ability to make urea), although some species never left, or returned to, the water could of course have adapted to freshwater lakes and rivers.

Lungs

It is now clear that the common ancestor of the bony fishes (Osteichthyes) had a primitive air-breathing lung—later evolved into a swim bladder in most actinopterygians (ray-finned fishes). This suggests that crossopterygians evolved in warm shallow waters, using their simple lung when the oxygen level in the water became too low.

Fleshy lobe-fins supported on bones rather than ray-stiffened fins seem to have been an ancestral trait of all bony fishes (Osteichthyes). The lobe-finned ancestors of the tetrapods evolved them further, while the ancestors of the ray-finned fishes (Actinopterygii) evolved their fins in a different direction. The most primitive group of actinopterygians, the bichirs, still have fleshy frontal fins.

Fossils of early tetrapods

Nine genera of Devonian tetrapods have been described, several known mainly or entirely from lower jaw material. All but one were from the Laurasian supercontinent, which comprised Europe, North America and Greenland. The only exception is a single Gondwanan genus, Metaxygnathus, which has been found in Australia.

The first Devonian tetrapod identified from Asia was recognized from a fossil jawbone reported in 2002. The Chinese tetrapod Sinostega pani was discovered among fossilized tropical plants and lobe-finned fish in the red sandstone sediments of the Ningxia Hui Autonomous Region of northwest China. This finding substantially extended the geographical range of these animals and has raised new questions about the worldwide distribution and great taxonomic diversity they achieved within a relatively short time.

These earliest tetrapods were not terrestrial. The earliest confirmed terrestrial forms are known from the early Carboniferous deposits, some 20 million years later. Still, they may have spent very brief periods out of water and would have used their legs to paw their way through the mud.

Why they went to land in the first place is still debated. One reason could be that the small juveniles who had completed their metamorphosis had what it took to make use of what land had to offer. Already adapted to breathe air and move around in shallow waters near land as a protection (just as modern fish (and amphibians) often spent the first part of their life in the comparative safety of shallow waters like mangrove forests), two very different niches partially overlapped each other, with the young juveniles in the diffuse line between. One of them was overcrowded and dangerous while the other was much safer and much less crowded, offering less competition over resources. The terrestrial niche was also a much more challenging place for primary aquatic animals, but because of the way evolution and the selection pressure works, those juveniles who could take advantage of this would be rewarded. Once they gained a small foothold on land, thanks to their preadaptations and being at the right place at the right time, favourable variations in their descendants would gradually result in continuing evolution and diversification.

At this time the abundance of invertebrates crawling around on land and near water, in moist soil and wet litter, offered a food supply. Some were even big enough to eat small tetrapods, but the land was free from dangers common in the water.

From water to land

Initially making only tentative forays onto land, tetrapods adapted to terrestrial environments over time and spent longer periods away from the water. It is also possible that the adults started to spend some time on land (as the skeletal modifications in early tetrapods such as Ichthyostega suggests) to bask in the sun close to the water's edge, while otherwise being mostly aquatic.

Carboniferous tetrapods

Until the 1990s, there was a 30 million year gap in the fossil record between the late Devonian tetrapods and the reappearance of tetrapod fossils in recognizable mid-Carboniferous amphibian lineages. It was referred to as "Romer's Gap", which now covers the period from about 360 to 345 million years ago (the Devonian-Carboniferous transition and the early Mississippian), after the palaeontologist who recognized it.
During the "gap", tetrapod backbones developed, as did limbs with digits and other adaptations for terrestrial life. Ears, skulls and vertebral columns all underwent changes too. The number of digits on hands and feet became standardized at five, as lineages with more digits died out. The very few tetrapod fossils found in the "gap" are all the more precious.

The transition from an aquatic lobe-finned fish to an air-breathing amphibian was a momentous occasion in the evolutionary history of the vertebrates. For an animal to live in a gravity-neutral, aqueous environment and then invade one that is entirely different required major changes to the overall body plan, both in form and in function. Eryops is an example of an animal that made such adaptations. It retained and refined most of the traits found in its fish ancestors. Sturdy limbs supported and transported its body while out of water. A thicker, stronger backbone prevented its body from sagging under its own weight. Also, by utilizing vestigial fish jaw bones, a rudimentary ear was developed, allowing Eryops to hear airborne sound.

By the Visean age of mid-Carboniferous times the early tetrapods had radiated into at least three main branches. Recognizable basal-group tetrapods are representative of the temnospondyls (e.g. Eryops) lepospondyls (e.g. Diplocaulus) and anthracosaurs, which were the relatives and ancestors of the Amniota. Depending on whichever authorities one follows, modern amphibians (frogs, salamanders and caecilians) are derived from either temnospondyls or lepospondyls (or possibly both, although this is now a minority position).

The first amniotes are known from the early part of the Late Carboniferous, and during the Triassic counted among their number the earliest mammals, turtles, crocodiles (lizards and birds appeared in the Jurassic, and snakes in the Cretaceous), and a fourth Carboniferous group, the baphetids, which are thought related to temnospondyls, left no modern survivors.

Amphibians and reptiles were affected by the Carboniferous Rainforest Collapse (CRC), an extinction event that occurred ~300 million years ago. The sudden collapse of a vital ecosystem shifted the diversity and abundance of major groups. Several large groups, labyrinthodont amphibians were particularly devastated, while the first reptiles fared better, being ecologically adapted to the drier conditions that followed. Amphibians must return to water to lay eggs, in contrast, reptiles - whose amniote eggs have a membrane ensuring gas exchange out of water and can therefore be laid on land - were better adapted to the new conditions. Reptiles invaded new niches at a faster rate and began diversifying their diets, developing herbivory and carnivory, previously only having been insectivores and piscivores.[49]

Permian tetrapods

In the Permian period, in addition to temnospondyl and anthracosaur clades among the early "amphibia" (labyrinthodonts), there were two important clades of amniotes, the Sauropsida and the Synapsida. The latter were the most important and successful Permian animals.
The end of the Permian saw a major turnover in fauna during the Permian–Triassic extinction event. There was a protracted loss of species, due to multiple extinction pulses.[50] Many of the once large and diverse groups died out or were greatly reduced.

Mesozoic tetrapods

Life on Earth seemed to recover quickly after the Permian extinctions, but this was mostly in the form of disaster taxa, such as the hardy Lystrosaurus; specialized animals that formed complex ecosystems, with high biodiversity, complex food webs and a variety of niches, took much longer to recover.[50] Current research indicates that this long recovery was due to successive waves of extinction, which inhibited recovery, and to prolonged environmental stress to organisms that continued into the Early Triassic. Recent research indicates that recovery did not begin until the start of the mid-Triassic, 4M to 6M years after the extinction;[51] and some writers estimate that the recovery was not complete until 30M years after the P-Tr extinction, i.e. in the late Triassic.[50]

A small group of reptiles, the diapsids, began to diversify during the Triassic, notably the dinosaurs. By the late Mesozoic, the large labyrinthodont groups that first appeared during the Paleozoic such as temnospondyls and reptile-like amphibians had gone extinct. All current major groups of sauropsids evolved during the Mesozoic, with birds first appearing in the Jurassic as a derived clade of theropod dinosaurs. Many groups of synapsids such as anomodonts and therocephalians that once comprised the dominant terrestrial fauna of the Permian also became extinct during the Mesozoic; during the Triassic, however, one group (Cynodontia) gave rise to the descendant taxon Mammalia, which survived through the Mesozoic to later diversify during the Cenozoic.

Cenozoic tetrapods

Extant (living) tetrapods

Following the great faunal turnover at the end of the Mesozoic, only six major groups of tetrapods were left, all of which also include many extinct groups:

New evidence emerges on the origins of life

Original link:  http://phys.org/news/2015-06-evidence-emerges-life.html


New evidence emerges on the origins of life



New research shows that the close linkage between the physical properties of amino acids,the genetic code, and protein folding was likely the key factor in the evolution frombuilding blocks to organisms in Earth's primordial soup. Credit: Gerald Prins


In the beginning, there were simple chemicals. And they produced amino acids that eventually became the proteins necessary to create single cells. And the single cells became plants and animals. Recent research is revealing how the primordial soup created the amino acid building blocks, and there is widespread scientific consensus on the evolution from the first cell into plants and animals. But it's still a mystery how the building blocks were first assembled into the proteins that formed the machinery of all cells. Now, two long-time University of North Carolina scientists - Richard Wolfenden, PhD, and Charles Carter, PhD - have shed new light on the transition from building blocks into life some 4 billion years ago.

"Our work shows that the close linkage between the of amino acids, the , and protein folding was likely essential from the beginning, long before large, sophisticated molecules arrived on the scene," said Carter, professor of biochemistry and biophysics at the UNC School of Medicine. "This close interaction was likely the key factor in the evolution from building blocks to organisms."

Their findings, published in companion papers in the Proceedings of the National Academy of Sciences, fly in the face of the problematic "RNA world" theory, which posits that RNA - the molecule that today plays roles in coding, regulating, and expressing genes - elevated itself from the primordial soup of amino acids and cosmic chemicals to give rise first to short proteins called peptides and then to single-celled organisms.

Wolfenden and Carter argue that RNA did not work alone; in fact, it was no more likely that RNA catalyzed peptide formation than it was for peptides to catalyze RNA formation.

The finding adds a new layer to the story of how life evolved billions of years ago.

Its name was LUCA

The scientific community recognizes that 3.6 billion years ago there existed the last universal common ancestor, or LUCA, of all living things presently on Earth. It was likely a single-cell organism. It had a few hundred genes. It already had complete blueprints for DNA replication, protein synthesis, and RNA transcription. It had all the basic components - such as lipids - that modern organisms have. From LUCA forward, it's relatively easy to see how life as we know it evolved.

Before 3.6 billion years, however, there is no hard evidence about how LUCA arose from a boiling caldron of chemicals that formed on Earth after the creation of the planet about 4.6 billion years ago. Those chemicals reacted to form amino acids, which remain the building blocks of proteins in our own cells today.

"We know a lot about LUCA and we are beginning to learn about the chemistry that produced like amino acids, but between the two there is a desert of knowledge," Carter said. "We haven't even known how to explore it."

The UNC research represents an outpost in that desert.

"Dr. Wolfenden established physical properties of the twenty amino acids, and we have found a link between those properties and the genetic code," Carter said. "That link suggests to us that there was a second, earlier code that made possible the peptide-RNA interactions necessary to launch a selection process that we can envision creating the first life on Earth."

Thus, Carter said, RNA did not have to invent itself from the . Instead, even before there were cells, it seems more likely that there were interactions between amino acids and nucleotides that led to the co-creation of proteins and RNA.

Complexity from simplicity

Proteins must fold in specific ways to function properly. The first PNAS paper, led by Wolfenden, shows that both the polarities of the twenty amino acids (how they distribute between water and oil) and their sizes help explain the complex process of protein folding - when a chain of connected amino acids arranges itself to form a particular 3-dimensional structure that has a specific biological function.

"Our experiments show how the polarities of amino acids change consistently across a wide range of temperatures in ways that would not disrupt the basic relationships between genetic coding and ," said Wolfenden, Alumni Distinguished Professor of Biochemistry and Biophysics. This was important to establish because when life was first forming on Earth, temperatures were hot, probably much hotter than they are now or when the first plants and animals were established.

A series of biochemical experiments with amino acids conducted in Wolfenden's lab showed that two properties - the sizes as well as the polarities of amino acids - were necessary and sufficient to explain how the amino acids behaved in folded proteins and that these relationships also held at the higher temperatures of Earth 4 billion years ago.

The second PNAS paper, led by Carter, delves into how enzymes called aminoacyl-tRNA synthetases recognized transfer ribonucleic acid, or tRNA. Those enzymes translate the genetic code.

"Think of tRNA as an adapter," Carter said. "One end of the adapter carries a particular amino acid; the other end reads the genetic blueprint for that amino acid in messenger RNA. Each synthetase matches one of the twenty amino acids with its own adapter so that the genetic blueprint in messenger RNA faithfully makes the correct every time."

Carter's analysis shows that the two different ends of the L-shaped tRNA molecule contained independent codes or rules that specify which amino acid to select. The end of tRNA that carried the amino acid sorted amino acids specifically according to size.

The other end of the L-shaped tRNA molecule is called the tRNA anticodon. It reads codons, which are sequences of three RNA nucleotides in genetic messages that select amino acids according to polarity.

Wolfenden and Carter's findings imply that the relationships between tRNA and the physical properties of the - their sizes and polarities - were crucial during the Earth's primordial era. In light of Carter's previous work with very small active cores of tRNA synthetases called Urzymes, it now seems likely that selection by size preceded selection according to polarity. This ordered selection meant that the earliest proteins did not necessarily fold into unique shapes, and that their unique structures evolved later.

Carter said, "Translating the genetic code is the nexus connecting pre-biotic chemistry to biology."

He and Wolfenden believe that the intermediate stage of genetic coding can help resolve two paradoxes: how complexity arose from simplicity, and how life divided the labor between two very different kinds of polymers: proteins and nucleic acids.

"The fact that genetic coding developed in two successive stages - the first of which was relatively simple - may be one reason why life was able to emerge while the earth was still quite young," Wolfenden noted.

An earlier code, which enabled the earliest coded peptides to bind RNA, may have furnished a decisive selective advantage. And this primitive system could then undergo a natural selection process, thereby launching a new and more biological form of evolution.

"The collaboration between RNA and peptides was likely necessary for the spontaneous emergence of complexity," Carter added. "In our view, it was a peptide-RNA world, not an RNA-only world."


More information: Temperature dependence of amino acid hydrophobicities, www.pnas.org/cgi/doi/10.1073/pnas.1507565112

tRNA acceptor stem and anticodon bases form independent codes related to protein folding, www.pnas.org/cgi/doi/10.1073/pnas.1507569112

Cryogenics

From Wikipedia, the free encyclopedia https://en.wikipedia.org/wiki/Cryogenics...