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Tuesday, October 15, 2024

Modern synthesis (20th century)

From Wikipedia, the free encyclopedia
Several major ideas about evolution came together in the population genetics of the early 20th century to form the modern synthesis, including genetic variation, natural selection, and particulate (Mendelian) inheritance. This ended the eclipse of Darwinism and supplanted a variety of non-Darwinian theories of evolution.

The modern synthesis was the early 20th-century synthesis of Charles Darwin's theory of evolution and Gregor Mendel's ideas on heredity into a joint mathematical framework. Julian Huxley coined the term in his 1942 book, Evolution: The Modern Synthesis. The synthesis combined the ideas of natural selection, Mendelian genetics, and population genetics. It also related the broad-scale macroevolution seen by palaeontologists to the small-scale microevolution of local populations.

The synthesis was defined differently by its founders, with Ernst Mayr in 1959, G. Ledyard Stebbins in 1966, and Theodosius Dobzhansky in 1974 offering differing basic postulates, though they all include natural selection, working on heritable variation supplied by mutation. Other major figures in the synthesis included E. B. Ford, Bernhard Rensch, Ivan Schmalhausen, and George Gaylord Simpson. An early event in the modern synthesis was R. A. Fisher's 1918 paper on mathematical population genetics, though William Bateson, and separately Udny Yule, had already started to show how Mendelian genetics could work in evolution in 1902.

Different syntheses followed, including with social behaviour in E. O. Wilson's sociobiology in 1975, evolutionary developmental biology's integration of embryology with genetics and evolution, starting in 1977, and Massimo Pigliucci's and Gerd B. Müller's proposed extended evolutionary synthesis of 2007. In the view of evolutionary biologist Eugene Koonin in 2009, the modern synthesis will be replaced by a 'post-modern' synthesis that will include revolutionary changes in molecular biology, the study of prokaryotes and the resulting tree of life, and genomics.

Developments leading up to the synthesis

Darwin's pangenesis theory. Every part of the body emits tiny gemmules which migrate to the gonads and contribute to the next generation via the fertilised egg. Changes to the body during an organism's life would be inherited, as in Lamarckism.

Darwin's evolution by natural selection, 1859

Charles Darwin's 1859 book, On the Origin of Species, convinced most biologists that evolution had occurred, but not that natural selection was its primary mechanism. In the 19th and early 20th centuries, variations of Lamarckism (inheritance of acquired characteristics), orthogenesis (progressive evolution), saltationism (evolution by jumps) and mutationism (evolution driven by mutations) were discussed as alternatives. Darwin himself had sympathy for Lamarckism, but Alfred Russel Wallace advocated natural selection and totally rejected Lamarckism. In 1880, Samuel Butler labelled Wallace's view neo-Darwinism.

Blending inheritance, implied by pangenesis, causes the averaging out of every characteristic, which as the engineer Fleeming Jenkin pointed out, would make evolution by natural selection impossible.

The eclipse of Darwinism, 1880s onwards

From the 1880s onwards, biologists grew skeptical of Darwinian evolution. This eclipse of Darwinism (in Julian Huxley's words) grew out of the weaknesses in Darwin's account, with respect to his view of inheritance. Darwin believed in blending inheritance, which implied that any new variation, even if beneficial, would be weakened by 50% at each generation, as the engineer Fleeming Jenkin noted in 1868. This in turn meant that small variations would not survive long enough to be selected. Blending would therefore directly oppose natural selection. In addition, Darwin and others considered Lamarckian inheritance of acquired characteristics entirely possible, and Darwin's 1868 theory of pangenesis, with contributions to the next generation (gemmules) flowing from all parts of the body, actually implied Lamarckism as well as blending.

August Weismann's germ plasm theory. The hereditary material, the germplasm, is confined to the gonads and the gametes. Somatic cells (of the body) develop afresh in each generation from the germplasm.

Weismann's germ plasm, 1892

August Weismann's idea, set out in his 1892 book Das Keimplasma: eine Theorie der Vererbung ("The Germ Plasm: a Theory of Inheritance"), was that the hereditary material, which he called the germ plasm, and the rest of the body (the soma) had a one-way relationship: the germ-plasm formed the body, but the body did not influence the germ-plasm, except indirectly in its participation in a population subject to natural selection. If correct, this made Darwin's pangenesis wrong, and Lamarckian inheritance impossible. His experiment on mice, cutting off their tails and showing that their offspring had normal tails, demonstrated that inheritance was 'hard'. He argued strongly and dogmatically for Darwinism and against Lamarckism, polarising opinions among other scientists. This increased anti-Darwinian feeling, contributing to its eclipse.

Disputed beginnings

Genetics, mutationism and biometrics, 1900–1918

William Bateson championed Mendelism.

While carrying out breeding experiments to clarify the mechanism of inheritance in 1900, Hugo de Vries and Carl Correns independently rediscovered Gregor Mendel's work. News of this reached William Bateson in England, who reported on the paper during a presentation to the Royal Horticultural Society in May 1900. In Mendelian inheritance, the contributions of each parent retain their integrity, rather than blending with the contribution of the other parent. In the case of a cross between two true-breeding varieties such as Mendel's round and wrinkled peas, the first-generation offspring are all alike, in this case, all round. Allowing these to cross, the original characteristics reappear (segregation): about 3/4 of their offspring are round, 1/4 wrinkled. There is a discontinuity between the appearance of the offspring; de Vries coined the term allele for a variant form of an inherited characteristic. This reinforced a major division of thought, already present in the 1890s, between gradualists who followed Darwin, and saltationists such as Bateson.

The two schools were the Mendelians, such as Bateson and de Vries, who favoured mutationism, evolution driven by mutation, based on genes whose alleles segregated discretely like Mendel's peas; and the biometric school, led by Karl Pearson and Walter Weldon. The biometricians argued vigorously against mutationism, saying that empirical evidence indicated that variation was continuous in most organisms, not discrete as Mendelism seemed to predict; they wrongly believed that Mendelism inevitably implied evolution in discontinuous jumps.

Karl Pearson led the biometric school.

A traditional view is that the biometricians and the Mendelians rejected natural selection and argued for their separate theories for 20 years, the debate only resolved by the development of population genetics. A more recent view is that Bateson, de Vries, Thomas Hunt Morgan and Reginald Punnett had by 1918 formed a synthesis of Mendelism and mutationism. The understanding achieved by these geneticists spanned the action of natural selection on alleles (alternative forms of a gene), the Hardy–Weinberg equilibrium, the evolution of continuously-varying traits (like height), and the probability that a new mutation will become fixed. In this view, the early geneticists accepted natural selection but rejected Darwin's non-Mendelian ideas about variation and heredity, and the synthesis began soon after 1900. The traditional claim that Mendelians rejected the idea of continuous variation is false; as early as 1902, Bateson and Saunders wrote that "If there were even so few as, say, four or five pairs of possible allelomorphs, the various homo- and heterozygous combinations might, on seriation, give so near an approach to a continuous curve, that the purity of the elements would be unsuspected". Also in 1902, the statistician Udny Yule showed mathematically that given multiple factors, Mendel's theory enabled continuous variation. Yule criticised Bateson's approach as confrontational, but failed to prevent the Mendelians and the biometricians from falling out.

Castle's hooded rats, 1911

Starting in 1906, William Castle carried out a long study of the effect of selection on coat colour in rats. The piebald or hooded pattern was recessive to the grey wild type. He crossed hooded rats with both wild and "Irish" types, and then back-crossed the offspring with pure hooded rats. The dark stripe on the back was bigger. He then tried selecting different groups for bigger or smaller stripes for 5 generations and found that it was possible to change the characteristics considerably beyond the initial range of variation. This effectively refuted de Vries's claim that continuous variation was caused by the environment and could not be inherited. By 1911, Castle noted that the results could be explained by Darwinian selection on a heritable variation of a sufficient number of Mendelian genes.

Morgan's fruit flies, 1912

Thomas Hunt Morgan began his career in genetics as a saltationist and started out trying to demonstrate that mutations could produce new species in fruit flies. However, the experimental work at his lab with the fruit fly, Drosophila melanogaster showed that rather than creating new species in a single step, mutations increased the supply of genetic variation in the population. By 1912, after years of work on the genetics of fruit flies, Morgan showed that these insects had many small Mendelian factors (discovered as mutant flies) on which Darwinian evolution could work as if the variation was fully continuous. The way was open for geneticists to conclude that Mendelism supported Darwinism.

An obstruction: Woodger's positivism, 1929

The theoretical biologist and philosopher of biology Joseph Henry Woodger led the introduction of positivism into biology with his 1929 book Biological Principles. He saw a mature science as being characterised by a framework of hypotheses that could be verified by facts established by experiments. He criticised the traditional natural history style of biology, including the study of evolution, as immature science, since it relied on narrative. Woodger set out to play the role of Robert Boyle's 1661 Sceptical Chymist, intending to convert the subject of biology into a formal, unified science, and ultimately, following the Vienna Circle of logical positivists like Otto Neurath and Rudolf Carnap, to reduce biology to physics and chemistry. His efforts stimulated the biologist J. B. S. Haldane to push for the axiomatisation of biology, and by influencing thinkers such as Huxley, helped to bring about the modern synthesis. The positivist climate made natural history unfashionable, and in America, research and university-level teaching on evolution declined almost to nothing by the late 1930s. The Harvard physiologist William John Crozier told his students that evolution was not even a science: "You can't experiment with two million years!"

The tide of opinion turned with the adoption of mathematical modelling and controlled experimentation in population genetics, combining genetics, ecology and evolution in a framework acceptable to positivism.

Elements of the synthesis

Fisher and Haldane's mathematical population genetics, 1918–1930

In 1918, R. A. Fisher wrote "The Correlation between Relatives on the Supposition of Mendelian Inheritance," which showed how continuous variation could come from a number of discrete genetic loci. In this and other papers, culminating in his 1930 book The Genetical Theory of Natural Selection, Fisher showed how Mendelian genetics was consistent with the idea of evolution by natural selection.

In the 1920s, a series of papers by J. B. S. Haldane analyzed real-world examples of natural selection, such as the evolution of industrial melanism in peppered moths. and showed that natural selection could work even faster than Fisher had assumed. Both of these scholars, and others, such as Dobzhansky and Wright, wanted to raise biology to the standards of the physical sciences by basing it on mathematical modeling and empirical testing. Natural selection, once considered unverifiable, was becoming predictable, measurable, and testable.

De Beer's embryology, 1930

The traditional view is that developmental biology played little part in the modern synthesis, but in his 1930 book Embryos and Ancestors, the evolutionary embryologist Gavin de Beer anticipated evolutionary developmental biology by showing that evolution could occur by heterochrony, such as in the retention of juvenile features in the adult. This, de Beer argued, could cause apparently sudden changes in the fossil record, since embryos fossilise poorly. As the gaps in the fossil record had been used as an argument against Darwin's gradualist evolution, de Beer's explanation supported the Darwinian position. However, despite de Beer, the modern synthesis largely ignored embryonic development when explaining the form of organisms, since population genetics appeared to be an adequate explanation of how such forms evolved.

Wright's adaptive landscape, 1932

Sewall Wright introduced the idea of a fitness landscape with local optima.

The population geneticist Sewall Wright focused on combinations of genes that interacted as complexes, and the effects of inbreeding on small relatively isolated populations, which could be subject to genetic drift. In a 1932 paper, he introduced the concept of an adaptive landscape in which phenomena such as cross breeding and genetic drift in small populations could push them away from adaptive peaks, which would in turn allow natural selection to push them towards new adaptive peaks. Wright's model would appeal to field naturalists such as Theodosius Dobzhansky and Ernst Mayr who were becoming aware of the importance of geographical isolation in real world populations. The work of Fisher, Haldane and Wright helped to found the discipline of theoretical population genetics.

Dobzhansky's evolutionary genetics, 1937

Drosophila pseudoobscura, the fruit fly which served as Theodosius Dobzhansky's model organism

Theodosius Dobzhansky, an immigrant from the Soviet Union to the United States, who had been a postdoctoral worker in Morgan's fruit fly lab, was one of the first to apply genetics to natural populations. He worked mostly with Drosophila pseudoobscura. He says pointedly: "Russia has a variety of climates from the Arctic to sub-tropical... Exclusively laboratory workers who neither possess nor wish to have any knowledge of living beings in nature were and are in a minority." Not surprisingly, there were other Russian geneticists with similar ideas, though for some time their work was known to only a few in the West. His 1937 work Genetics and the Origin of Species was a key step in bridging the gap between population geneticists and field naturalists. It presented the conclusions reached by Fisher, Haldane, and especially Wright in their highly mathematical papers in a form that was easily accessible to others. Further, Dobzhansky asserted the physicality, and hence the biological reality, of the mechanisms of inheritance: that evolution was based on material genes, arranged in a string on physical hereditary structures, the chromosomes, and linked more or less strongly to each other according to their actual physical distances on the chromosomes. As with Haldane and Fisher, Dobzhansky's "evolutionary genetics" was a genuine science, now unifying cell biology, genetics, and both micro and macroevolution. His work emphasized that real-world populations had far more genetic variability than the early population geneticists had assumed in their models and that genetically distinct sub-populations were important. Dobzhansky argued that natural selection worked to maintain genetic diversity as well as by driving change. He was influenced by his exposure in the 1920s to the work of Sergei Chetverikov, who had looked at the role of recessive genes in maintaining a reservoir of genetic variability in a population, before his work was shut down by the rise of Lysenkoism in the Soviet Union. By 1937, Dobzhansky was able to argue that mutations were the main source of evolutionary changes and variability, along with chromosome rearrangements, effects of genes on their neighbours during development, and polyploidy. Next, genetic drift (he used the term in 1941), selection, migration, and geographical isolation could change gene frequencies. Thirdly, mechanisms like ecological or sexual isolation and hybrid sterility could fix the results of the earlier processes.

Ford's ecological genetics, 1940

E. B. Ford studied polymorphism in the scarlet tiger moth for many years.

E. B. Ford was an experimental naturalist who wanted to test natural selection in nature, virtually inventing the field of ecological genetics. His work on natural selection in wild populations of butterflies and moths was the first to show that predictions made by R. A. Fisher were correct. In 1940, he was the first to describe and define genetic polymorphism, and to predict that human blood group polymorphisms might be maintained in the population by providing some protection against disease. His 1949 book Mendelism and Evolution helped to persuade Dobzhansky to change the emphasis in the third edition of his famous textbook Genetics and the Origin of Species from drift to selection.

Schmalhausen's stabilizing selection, 1941

Ivan Schmalhausen developed the theory of stabilizing selection, the idea that selection can preserve a trait at some value, publishing a paper in Russian titled "Stabilizing selection and its place among factors of evolution" in 1941 and a monograph Factors of Evolution: The Theory of Stabilizing Selection in 1945. He developed it from J. M. Baldwin's 1902 concept that changes induced by the environment will ultimately be replaced by hereditary changes (including the Baldwin effect on behaviour), following that theory's implications to their Darwinian conclusion, and bringing him into conflict with Lysenkoism. Schmalhausen observed that stabilizing selection would remove most variations from the norm, most mutations being harmful. Dobzhansky called the work "an important missing link in the modern view of evolution".

Huxley's popularising synthesis, 1942

Julian Huxley presented a serious but popularising version of the theory in his 1942 book Evolution: The Modern Synthesis.

In 1942, Julian Huxley's serious but popularising Evolution: The Modern Synthesis introduced a name for the synthesis and intentionally set out to promote a "synthetic point of view" on the evolutionary process. He imagined a wide synthesis of many sciences: genetics, developmental physiology, ecology, systematics, palaeontology, cytology, and mathematical analysis of biology, and assumed that evolution would proceed differently in different groups of organisms according to how their genetic material was organised and their strategies for reproduction, leading to progressive but varying evolutionary trends. His vision was of an "evolutionary humanism", with a system of ethics and a meaningful place for "Man" in the world grounded in a unified theory of evolution which would demonstrate progress leading to humanity at its summit. Natural selection was in his view a "fact of nature capable of verification by observation and experiment", while the "period of synthesis" of the 1920s and 1930s had formed a "more unified science", rivalling physics and enabling the "rebirth of Darwinism".

However, the book was not the research text that it appeared to be. In the view of the philosopher of science Michael Ruse, and in Huxley's own opinion, Huxley was "a generalist, a synthesizer of ideas, rather than a specialist". Ruse observes that Huxley wrote as if he were adding empirical evidence to the mathematical framework established by Fisher and the population geneticists, but that this was not so. Huxley avoided mathematics, for instance not even mentioning Fisher's fundamental theorem of natural selection. Instead, Huxley used a mass of examples to demonstrate that natural selection is powerful and that it works on Mendelian genes. The book was successful in its goal of persuading readers of the reality of evolution, effectively illustrating topics such as island biogeography, speciation, and competition. Huxley further showed that the appearance of long-term orthogenetic trends – predictable directions for evolution – in the fossil record were readily explained as allometric growth (since parts are interconnected). All the same, Huxley did not reject orthogenesis out of hand, but maintained a belief in progress all his life, with Homo sapiens as the endpoint, and he had since 1912 been influenced by the vitalist philosopher Henri Bergson, though in public he maintained an atheistic position on evolution. Huxley's belief in progress within evolution and evolutionary humanism was shared in various forms by Dobzhansky, Mayr, Simpson and Stebbins, all of them writing about "the future of Mankind". Both Huxley and Dobzhansky admired the palaeontologist priest Pierre Teilhard de Chardin, Huxley writing the introduction to Teilhard's 1955 book on orthogenesis, The Phenomenon of Man. This vision required evolution to be seen as the central and guiding principle of biology.

Mayr's allopatric speciation, 1942

Ernst Mayr argued that geographic isolation was needed to provide sufficient reproductive isolation for new species to form.

Ernst Mayr's key contribution to the synthesis was Systematics and the Origin of Species, published in 1942. It asserted the importance of and set out to explain population variation in evolutionary processes including speciation. He analysed in particular the effects of polytypic species, geographic variation, and isolation by geographic and other means. Mayr emphasized the importance of allopatric speciation, where geographically isolated sub-populations diverge so far that reproductive isolation occurs. He was skeptical of the reality of sympatric speciation believing that geographical isolation was a prerequisite for building up intrinsic (reproductive) isolating mechanisms. Mayr also introduced the biological species concept that defined a species as a group of interbreeding or potentially interbreeding populations that were reproductively isolated from all other populations. Before he left Germany for the United States in 1930, Mayr had been influenced by the work of the German biologist Bernhard Rensch, who in the 1920s had analyzed the geographic distribution of polytypic species, paying particular attention to how variations between populations correlated with factors such as differences in climate.

George Gaylord Simpson argued against the naive view that evolution such as of the horse took place in a "straight-line". He noted that any chosen line is one path in a complex branching tree, natural selection having no imposed direction.

Simpson's palaeontology, 1944

George Gaylord Simpson was responsible for showing that the modern synthesis was compatible with palaeontology in his 1944 book Tempo and Mode in Evolution. Simpson's work was crucial because so many palaeontologists had disagreed, in some cases vigorously, with the idea that natural selection was the main mechanism of evolution. It showed that the trends of linear progression (in for example the evolution of the horse) that earlier palaeontologists had used as support for neo-Lamarckism and orthogenesis did not hold up under careful examination. Instead, the fossil record was consistent with the irregular, branching, and non-directional pattern predicted by the modern synthesis.

Society for the Study of Evolution, 1946

During World War II, Mayr edited a series of bulletins of the Committee on Common Problems of Genetics, Paleontology, and Systematics, formed in 1943, reporting on discussions of a "synthetic attack" on the interdisciplinary problems of evolution. In 1946, the committee became the Society for the Study of Evolution, with Mayr, Dobzhansky and Sewall Wright the first of the signatories. Mayr became the editor of its journal, Evolution. From Mayr and Dobzhansky's point of view, suggests the historian of science Betty Smocovitis, Darwinism was reborn, evolutionary biology was legitimised, and genetics and evolution were synthesised into a newly unified science. Everything fitted into the new framework, except "heretics" like Richard Goldschmidt who annoyed Mayr and Dobzhansky by insisting on the possibility of speciation by macromutation, creating "hopeful monsters". The result was "bitter controversy".

Speciation via polyploidy: a diploid cell may fail to separate during meiosis, producing diploid gametes, which self-fertilize to produce a fertile tetraploid zygote that cannot interbreed with its parent species.

Stebbins's botany, 1950

The botanist G. Ledyard Stebbins extended the synthesis to encompass botany. He described the important effects on speciation of hybridization and polyploidy in plants in his 1950 book Variation and Evolution in Plants. These permitted evolution to proceed rapidly at times, polyploidy in particular evidently being able to create new species effectively instantaneously.

Definitions by the founders

The modern synthesis was defined differently by its various founders, with differing numbers of basic postulates, as shown in the table.

Definitions of the modern synthesis by its founders, as they numbered them
Component Mayr 1959 Stebbins, 1966 Dobzhansky, 1974
Mutation (1) Randomness in all events that produce new genotypes, e.g. mutation  (1) a source of variability, but not of direction (1) yields genetic raw materials
Recombination (1) Randomness in recombination, fertilisation (2) a source of variability, but not of direction
Chromosomal organisation
(3) affects genetic linkage, arranges variation in gene pool
Natural selection (2) is only direction-giving factor, as seen in adaptations to physical and biotic environment (4) guides changes to gene pool (2) constructs evolutionary changes from genetic raw materials
Reproductive isolation
(5) limits direction in which selection can guide the population (3) makes divergence irreversible in sexual organisms

After the synthesis

After the synthesis, evolutionary biology continued to develop with major contributions from workers including W. D. Hamilton, George C. Williams, E. O. Wilson, Edward B. Lewis and others.

Hamilton's inclusive fitness, 1964

In 1964, W. D. Hamilton published two papers on "The Genetical Evolution of Social Behaviour". These defined inclusive fitness as the number of offspring equivalents an individual rears, rescues or otherwise supports through its behaviour. This was contrasted with personal reproductive fitness, the number of offspring that the individual directly begets. Hamilton, and others such as John Maynard Smith, argued that a gene's success consisted in maximising the number of copies of itself, either by begetting them or by indirectly encouraging begetting by related individuals who shared the gene, the theory of kin selection.

Williams's gene-centred evolution, 1966

In 1966, George C. Williams published Adaptation and Natural Selection, outlined a gene-centred view of evolution following Hamilton's concepts, disputing the idea of evolutionary progress, and attacking the then widespread theory of group selection. Williams argued that natural selection worked by changing the frequency of alleles, and could not work at the level of groups. Gene-centred evolution was popularised by Richard Dawkins in his 1976 book The Selfish Gene and developed in his more technical writings.

Wilson's sociobiology, 1975

Ant societies have evolved elaborate caste structures, widely different in size and function.

In 1975, E. O. Wilson published his controversial book Sociobiology: The New Synthesis, the subtitle alluding to the modern synthesis as he attempted to bring the study of animal society into the evolutionary fold. This appeared radically new, although Wilson was following Darwin, Fisher, Dawkins and others. Critics such as Gerhard Lenski noted that he was following Huxley, Simpson and Dobzhansky's approach, which Lenski considered needlessly reductive as far as human society was concerned. By 2000, the proposed discipline of sociobiology had morphed into the relatively well-accepted discipline of evolutionary psychology.

Lewis's homeotic genes, 1978

Evolutionary developmental biology has formed a synthesis of evolutionary and developmental biology, discovering deep homology between the embryogenesis of such different animals as insects and vertebrates.

In 1977, recombinant DNA technology enabled biologists to start to explore the genetic control of development. The growth of evolutionary developmental biology from 1978, when Edward B. Lewis discovered homeotic genes, showed that many so-called toolkit genes act to regulate development, influencing the expression of other genes. It also revealed that some of the regulatory genes are extremely ancient, so that animals as different as insects and mammals share control mechanisms; for example, the Pax6 gene is involved in forming the eyes of mice and of fruit flies. Such deep homology provided strong evidence for evolution and indicated the paths that evolution had taken.

Later syntheses

In 1982, a historical note on a series of evolutionary biology books could state without qualification that evolution is the central organizing principle of biology. Smocovitis commented on this that "What the architects of the synthesis had worked to construct had by 1982 become a matter of fact", adding in a footnote that "the centrality of evolution had thus been rendered tacit knowledge, part of the received wisdom of the profession".

By the late 20th century, however, the modern synthesis was showing its age, and fresh syntheses to remedy its defects and fill in its gaps were proposed from different directions. These have included such diverse fields as the study of society, developmental biology, epigenetics, molecular biology, microbiology, genomics, symbiogenesis, and horizontal gene transfer. The physiologist Denis Noble argues that these additions render neo-Darwinism in the sense of the early 20th century's modern synthesis "at the least, incomplete as a theory of evolution", and one that has been falsified by later biological research.

Michael Rose and Todd Oakley note that evolutionary biology, formerly divided and "Balkanized", has been brought together by genomics. It has in their view discarded at least five common assumptions from the modern synthesis, namely that the genome is always a well-organised set of genes; that each gene has a single function; that species are well adapted biochemically to their ecological niches; that species are the durable units of evolution, and all levels from organism to organ, cell and molecule within the species are characteristic of it; and that the design of every organism and cell is efficient. They argue that the "new biology" integrates genomics, bioinformatics, and evolutionary genetics into a general-purpose toolkit for a "Postmodern Synthesis".

Pigliucci's extended evolutionary synthesis, 2007

In 2007, more than half a century after the modern synthesis, Massimo Pigliucci called for an extended evolutionary synthesis to incorporate aspects of biology that had not been included or had not existed in the mid-20th century. It revisits the relative importance of different factors, challenges assumptions made in the modern synthesis, and adds new factors such as multilevel selection, transgenerational epigenetic inheritance, niche construction, and evolvability.

Koonin's 'post-modern' evolutionary synthesis, 2009

A 21st century tree of life showing horizontal gene transfers among prokaryotes and the saltational endosymbiosis events that created the eukaryotes, neither fitting into the 20th century's modern synthesis

In 2009, Darwin's 200th anniversary, the Origin of Species' 150th, and the 200th of Lamarck's "early evolutionary synthesis", Philosophie Zoologique, the evolutionary biologist Eugene Koonin stated that while "the edifice of the [early 20th century] Modern Synthesis has crumbled, apparently, beyond repair", a new 21st-century synthesis could be glimpsed. Three interlocking revolutions had, he argued, taken place in evolutionary biology: molecular, microbiological, and genomic. The molecular revolution included the neutral theory, that most mutations are neutral and that negative selection happens more often than the positive form, and that all current life evolved from a single common ancestor. In microbiology, the synthesis has expanded to cover the prokaryotes, using ribosomal RNA to form a tree of life. Finally, genomics brought together the molecular and microbiological syntheses - in particular, horizontal gene transfer between bacteria shows that prokaryotes can freely share genes. Many of these points had already been made by other researchers such as Ulrich Kutschera and Karl J. Niklas.

Towards a replacement synthesis

Inputs to the modern synthesis, with other topics (inverted colours) such as developmental biology that were not joined with evolutionary biology until the turn of the 21st century

Biologists, alongside scholars of the history and philosophy of biology, have continued to debate the need for, and possible nature of, a replacement synthesis. For example, in 2017 Philippe Huneman and Denis M. Walsh stated in their book Challenging the Modern Synthesis that numerous theorists had pointed out that the disciplines of embryological developmental theory, morphology, and ecology had been omitted. They noted that all such arguments amounted to a continuing desire to replace the modern synthesis with one that united "all biological fields of research related to evolution, adaptation, and diversity in a single theoretical framework." They observed further that there are two groups of challenges to the way the modern synthesis viewed inheritance. The first is that other modes such as epigenetic inheritance, phenotypic plasticity, the Baldwin effect, and the maternal effect allow new characteristics to arise and be passed on and for the genes to catch up with the new adaptations later. The second is that all such mechanisms are part, not of an inheritance system, but a developmental system: the fundamental unit is not a discrete selfishly competing gene, but a collaborating system that works at all levels from genes and cells to organisms and cultures to guide evolution. The molecular biologist Sean B. Carroll has commented that had Huxley had access to evolutionary developmental biology, "embryology would have been a cornerstone of his Modern Synthesis, and so evo-devo is today a key element of a more complete, expanded evolutionary synthesis."

Historiography

Looking back at the conflicting accounts of the modern synthesis, the historian Betty Smocovitis notes in her 1996 book Unifying Biology: The Evolutionary Synthesis and Evolutionary Biology that both historians and philosophers of biology have attempted to grasp its scientific meaning, but have found it "a moving target"; the only thing they agreed on was that it was a historical event. In her words

"by the late 1980s the notoriety of the evolutionary synthesis was recognized ... So notorious did 'the synthesis' become, that few serious historically minded analysts would touch the subject, let alone know where to begin to sort through the interpretive mess left behind by the numerous critics and commentators".

Pangenesis

From Wikipedia, the free encyclopedia
Charles Darwin's pangenesis theory postulated that every part of the body emits tiny particles called gemmules which migrate to the gonads and are transferred to offspring. Gemmules were thought to develop into their associated body parts as offspring matures. The theory implied that changes to the body during an organism's life would be inherited, as proposed in Lamarckism.

Pangenesis was Charles Darwin's hypothetical mechanism for heredity, in which he proposed that each part of the body continually emitted its own type of small organic particles called gemmules that aggregated in the gonads, contributing heritable information to the gametes. He presented this 'provisional hypothesis' in his 1868 work The Variation of Animals and Plants Under Domestication, intending it to fill what he perceived as a major gap in evolutionary theory at the time. The etymology of the word comes from the Greek words pan (a prefix meaning "whole", "encompassing") and genesis ("birth") or genos ("origin"). Pangenesis mirrored ideas originally formulated by Hippocrates and other pre-Darwinian scientists, but using new concepts such as cell theory, explaining cell development as beginning with gemmules which were specified to be necessary for the occurrence of new growths in an organism, both in initial development and regeneration. It also accounted for regeneration and the Lamarckian concept of the inheritance of acquired characteristics, as a body part altered by the environment would produce altered gemmules. This made Pangenesis popular among the neo-Lamarckian school of evolutionary thought. This hypothesis was made effectively obsolete after the 1900 rediscovery among biologists of Gregor Mendel's theory of the particulate nature of inheritance.

Early history

Pangenesis was similar to ideas put forth by Hippocrates, Democritus and other pre-Darwinian scientists in proposing that the whole of parental organisms participate in heredity (thus the prefix pan). Darwin wrote that Hippocrates' pangenesis was "almost identical with mine—merely a change of terms—and an application of them to classes of facts necessarily unknown to the old philosopher."

The historian of science Conway Zirkle wrote that:

The hypothesis of pangenesis is as old as the belief in the inheritance of acquired characters. It was endorsed by Hippocrates, Democritus, Galen, Clement of Alexandria, Lactantius, St. Isidore of Seville, Bartholomeus Anglicus, St. Albert the Great, St. Thomas of Aquinas, Peter of Crescentius, Paracelsus, Jerome Cardan, Levinus Lemnius, Venette, John Ray, Buffon, Bonnet, Maupertuis, von Haller and Herbert Spencer.

Zirkle demonstrated that the idea of inheritance of acquired characteristics had become fully accepted by the 16th century and remained immensely popular through to the time of Lamarck's work, at which point it began to draw more criticism due to lack of hard evidence. He also stated that pangenesis was the only scientific explanation ever offered for this concept, developing from Hippocrates' belief that "the semen was derived from the whole body." In the 13th century, pangenesis was commonly accepted on the principle that semen was a refined version of food unused by the body, which eventually translated to 15th and 16th century widespread use of pangenetic principles in medical literature, especially in gynecology. Later pre-Darwinian important applications of the idea included hypotheses about the origin of the differentiation of races.

A theory put forth by Pierre Louis Maupertuis in 1745 called for particles from both parents governing the attributes of the child, although some historians have called his remarks on the subject cursory and vague.

In 1749, the French naturalist Georges-Louis Leclerc, Comte de Buffon developed a hypothetical system of heredity much like Darwin's pangenesis, wherein 'organic molecules' were transferred to offspring during reproduction and stored in the body during development. Commenting on Buffon's views, Darwin stated, "If Buffon had assumed that his organic molecules had been formed by each separate unit throughout the body, his view and mine would have been very closely similar."

In 1801, Erasmus Darwin advocated a hypothesis of pangenesis in the third edition of his book Zoonomia. In 1809, Jean-Baptiste Lamarck in his Philosophie Zoologique put forth evidence for the idea that characteristics acquired during the lifetime of an organism, from either environmental or behavioural effects, may be passed on to the offspring. Charles Darwin first had significant contact with Lamarckism during his time at the University of Edinburgh Medical School in the late 1820s, both through Robert Edmond Grant, whom he assisted in research, and in Erasmus's journals. Darwin's first known writings on the topic of Lamarckian ideas as they related to inheritance are found in a notebook he opened in 1837, also entitled Zoonomia. Historian Jonathan Hodge states that the theory of pangenesis itself first appeared in Darwin's notebooks in 1841.

In 1861, the Irish physician Henry Freke developed a variant of pangenesis in his book Origin of Species by Means of Organic Affinity. Freke proposed that all life was developed from microscopic organic agents which he named granules, which existed as 'distinct species of organizing matter' and would develop into different biological structures.

Four years before the publication of Variation, in his 1864 book Principles of Biology, Herbert Spencer proposed a theory of "physiological units" similar to Darwin's gemmules, which likewise were said to be related to specific body parts and responsible for the transmission of characteristics of those body parts to offspring. He supported the Lamarckian idea of transmission of acquired characteristics.

Darwin had debated whether to publish a theory of heredity for an extended period of time due to its highly speculative nature. He decided to include pangenesis in Variation after sending a 30-page manuscript to his close friend and supporter Thomas Huxley in May 1865, which was met by significant criticism from Huxley that made Darwin even more hesitant. However, Huxley eventually advised Darwin to publish, writing: "Somebody rummaging among your papers half a century hence will find Pangenesis & say 'See this wonderful anticipation of our modern Theories—and that stupid ass, Huxley, prevented his publishing them'" Darwin's initial version of pangenesis appeared in the first edition of Variation in 1868, and was later reworked for the publication of a second edition in 1875.

Theory

Darwin

Darwin's pangenesis theory attempted to explain the process of sexual reproduction, inheritance of traits, and complex developmental phenomena such as cellular regeneration in a unified mechanistic structure. Longshan Liu wrote that in modern terms, pangenesis deals with issues of "dominance inheritance, graft hybridization, reversion, xenia, telegony, the inheritance of acquired characters, regeneration and many groups of facts pertaining to variation, inheritance and development." Mechanistically, Darwin proposed pangenesis to occur through the transfer of organic particles which he named 'gemmules.' Gemmules, which he also sometimes referred to as plastitudes, pangenes, granules, or germs, were supposed to be shed by the organs of the body and carried in the bloodstream to the reproductive organs where they accumulated in the germ cells or gametes. Their accumulation was thought to occur by some sort of a 'mutual affinity.' Each gemmule was said to be specifically related to a certain body part- as described, they did not contain information about the entire organism. The different types were assumed to be dispersed through the whole body, and capable of self-replication given 'proper nutriment'. When passed on to offspring via the reproductive process, gemmules were thought to be responsible for developing into each part of an organism and expressing characteristics inherited from both parents. Darwin thought this to occur in a literal sense: he explained cell proliferation to progress as gemmules to bind to more developed cells of their same character and mature. In this sense, the uniqueness of each individual would be due to their unique mixture of their parents' gemmules, and therefore characters. Similarity to one parent over the other could be explained by a quantitative superiority of one parent's gemmules. Yongshen Lu points out that Darwin knew of cells' ability to multiply by self-division, so it is unclear how Darwin supposed the two proliferation mechanisms to relate to each other. He did clarify in a later statement that he had always supposed gemmules to only bind to and proliferate from developing cells, not mature ones. Darwin hypothesized that gemmules might be able to survive and multiply outside of the body in a letter to J. D. Hooker in 1870.

Some gemmules were thought to remain dormant for generations, whereas others were routinely expressed by all offspring. Every child was built up from selective expression of the mixture of the parents and grandparents' gemmules coming from either side. Darwin likened this to gardening: a flowerbed could be sprinkled with seeds "most of which soon germinate, some lie for a period dormant, whilst others perish." He did not claim gemmules were in the blood, although his theory was often interpreted in this way. Responding to Fleming Jenkin's review of On the Origin of Species, he argued that pangenesis would permit the preservation of some favourable variations in a population so that they wouldn't die out through blending.

Darwin thought that environmental effects that caused altered characteristics would lead to altered gemmules for the affected body part. The altered gemmules would then have a chance of being transferred to offspring, since they were assumed to be produced throughout an organism's life. Thus, pangenesis theory allowed for the Lamarckian idea of transmission of characteristics acquired through use and disuse. Accidental gemmule development in incorrect parts of the body could explain deformations and the 'monstrosities' Darwin cited in Variation.

De Vries

Hugo de Vries characterized his own version of pangenesis theory in his 1889 book Intracellular Pangenesis with two propositions, of which he only accepted the first:

I. In the cells there are numberless particles which differ from each other, and represent the individual cells, organs, functions and qualities of the whole individual. These particles are much larger than the chemical molecules and smaller than the smallest known organisms; yet they are for the most part comparable to the latter, because, like them, they can divide and multiply through nutrition and growth. They are transmitted, during cell-division, to the daughter-cells: this is the ordinary process of heredity.
II. In addition to this, the cells of the organism, at every stage of development, throw off such particles, which are conducted to the germ-cells and transmit to them those characters which the respective cells may have acquired during development.

Other variants

The historian of science Janet Browne points out that while Spencer and Carl von Nägeli also put forth ideas for systems of inheritance involving gemmules, their version of gemmules differed from Darwin's in that it contained "a complete microscopic blueprint for an entire creature." Spencer published his theory of "physiological units" three years prior to Darwin's publication of Variation. Browne adds that Darwin believed specifically in gemmules from each body part because they might explain how environmental effects could be passed on as characteristics to offspring.

Interpretations and applications of pangenesis continued to appear frequently in medical literature up until Weismann's experiments and subsequent publication on germ-plasm theory in 1892. For instance, an address by Huxley spurred on substantial work by Dr. James Ross in linking ideas found in Darwin's pangenesis to the germ theory of disease. Ross cites the work of both Darwin and Spencer as key to his application of pangenetic theory.

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Galton's experiments on rabbits

Darwin's half-cousin Francis Galton conducted wide-ranging inquiries into heredity which led him to refute Charles Darwin's hypothetical theory of pangenesis. In consultation with Darwin, he set out to see if gemmules were transported in the blood. In a long series of experiments from 1869 to 1871, he transfused the blood between dissimilar breeds of rabbits, and examined the features of their offspring. He found no evidence of characters transmitted in the transfused blood.

Galton was troubled because he began the work in good faith, intending to prove Darwin right, and having praised pangenesis in Hereditary Genius in 1869. Cautiously, he criticized his cousin's theory, although qualifying his remarks by saying that Darwin's gemmules, which he called "pangenes", might be temporary inhabitants of the blood that his experiments had failed to pick up.

Darwin challenged the validity of Galton's experiment, giving his reasons in an article published in Nature where he wrote:

Now, in the chapter on Pangenesis in my Variation of Animals and Plants under Domestication, I have not said one word about the blood, or about any fluid proper to any circulating system. It is, indeed, obvious that the presence of gemmules in the blood can form no necessary part of my hypothesis; for I refer in illustration of it to the lowest animals, such as the Protozoa, which do not possess blood or any vessels; and I refer to plants in which the fluid, when present in the vessels, cannot be considered as true blood." He goes on to admit: "Nevertheless, when I first heard of Mr. Galton's experiments, I did not sufficiently reflect on the subject, and saw not the difficulty of believing in the presence of gemmules in the blood.

After the circulation of Galton's results, the perception of pangenesis quickly changed to severe skepticism if not outright disbelief.

Weismann

August Weismann's germ plasm theory. The hereditary material, the germ plasm, is confined to the gonads. Somatic cells (of the body) develop afresh in each generation from the germ plasm. The implied Weismann barrier between the germ line and the soma prevents Lamarckian inheritance.

August Weismann's idea, set out in his 1892 book Das Keimplasma: eine Theorie der Vererbung (The Germ Plasm: a Theory of Inheritance), was that the hereditary material, which he called the germ plasm, and the rest of the body (the soma) had a one-way relationship: the germ-plasm formed the body, but the body did not influence the germ-plasm, except indirectly in its participation in a population subject to natural selection. This distinction is commonly referred to as the Weismann Barrier. If correct, this made Darwin's pangenesis wrong and Lamarckian inheritance impossible. His experiment on mice, cutting off their tails and showing that their offspring had normal tails across multiple generations, was proposed as a proof of the non-existence of Lamarckian inheritance, although Peter Gauthier has argued that Weismann's experiment showed only that injury did not affect the germ plasm and neglected to test the effect of Lamarckian use and disuse. Weismann argued strongly and dogmatically for Darwinism and against neo-Lamarckism, polarising opinions among other scientists. This increased anti-Darwinian feeling, contributing to its eclipse.

After pangenesis

Darwin's pangenesis theory was widely criticised, in part for its Lamarckian premise that parents could pass on traits acquired in their lifetime. Conversely, the neo-Lamarckians of the time seized upon pangenesis as evidence to support their case. Italian Botanist Federico Delpino's objection that gemmules' ability to self-divide is contrary to their supposedly innate nature gained considerable traction; however, Darwin was dismissive of this criticism, remarking that the particulate agents of smallpox and scarlet fever seem to have such characteristics. Lamarckism fell from favour after August Weismann's research in the 1880s indicated that changes from use (such as lifting weights to increase muscle mass) and disuse (such as being lazy and becoming weak) were not heritable. However, some scientists continued to voice their support in spite of Galton's and Weismann's results: notably, in 1900 Karl Pearson wrote that pangenesis "is no more disproved by the statement that 'gemmules have not been found in the blood,' than the atomic theory is disproved by the fact that no atoms have been found in the air." Finally, the rediscovery of Mendel's Laws of Inheritance in 1900 led to pangenesis being fully set aside. Julian Huxley has observed that the later discovery of chromosomes and the research of T. H. Morgan also made pangenesis untenable.

Some of Darwin's pangenesis principles do relate to heritable aspects of phenotypic plasticity, although the status of gemmules as a distinct class of organic particles has been firmly rejected. However, starting in the 1950s, many research groups in revisiting Galton's experiments found that heritable characteristics could indeed arise in rabbits and chickens following DNA injection or blood transfusion. This type of research originated in the Soviet Union in the late 1940s in the work of Sopikov and others, and was later corroborated by researchers in Switzerland as it was being further developed by the Soviet scientists. Notably, this work was supported in the USSR in part due to its conformation with the ideas of Trofim Lysenko, who espoused a version of neo-Lamarckism as part of Lysenkoism. Further research of this heritability of acquired characteristics developed into, in part, the modern field of epigenetics. Darwin himself had noted that "the existence of free gemmules is a gratuitous assumption"; by some accounts in modern interpretation, gemmules may be considered a prescient mix of DNA, RNA, proteins, prions, and other mobile elements that are heritable in a non-Mendelian manner at the molecular level. Liu points out that Darwin's ideas about gemmules replicating outside of the body are predictive of in vitro gene replication used, for instance, in PCR.

Lamarckism

From Wikipedia, the free encyclopedia
https://en.wikipedia.org/wiki/Lamarckism
Lamarck argued, as part of his theory of heredity, that a blacksmith's sons inherit the strong muscles he acquires from his work.

Lamarckism, also known as Lamarckian inheritance or neo-Lamarckism, is the notion that an organism can pass on to its offspring physical characteristics that the parent organism acquired through use or disuse during its lifetime. It is also called the inheritance of acquired characteristics or more recently soft inheritance. The idea is named after the French zoologist Jean-Baptiste Lamarck (1744–1829), who incorporated the classical era theory of soft inheritance into his theory of evolution as a supplement to his concept of orthogenesis, a drive towards complexity.

Introductory textbooks contrast Lamarckism with Charles Darwin's theory of evolution by natural selection. However, Darwin's book On the Origin of Species gave credence to the idea of heritable effects of use and disuse, as Lamarck had done, and his own concept of pangenesis similarly implied soft inheritance.

Many researchers from the 1860s onwards attempted to find evidence for Lamarckian inheritance, but these have all been explained away, either by other mechanisms such as genetic contamination or as fraud. August Weismann's experiment, considered definitive in its time, is now considered to have failed to disprove Lamarckism, as it did not address use and disuse. Later, Mendelian genetics supplanted the notion of inheritance of acquired traits, eventually leading to the development of the modern synthesis, and the general abandonment of Lamarckism in biology. Despite this, interest in Lamarckism has continued.

Since c. 2000 new experimental results in the fields of epigenetics, genetics, and somatic hypermutation proved the possibility of transgenerational epigenetic inheritance of traits acquired by the previous generation. These proved a limited validity of Lamarckism. The inheritance of the hologenome, consisting of the genomes of all an organism's symbiotic microbes as well as its own genome, is also somewhat Lamarckian in effect, though entirely Darwinian in its mechanisms.

Early history

Origins

Jean-Baptiste Lamarck repeated the ancient folk wisdom of the inheritance of acquired characteristics.

The inheritance of acquired characteristics was proposed in ancient times and remained a current idea for many centuries. The historian of science Conway Zirkle wrote in 1935 that:

Lamarck was neither the first nor the most distinguished biologist to believe in the inheritance of acquired characters. He merely endorsed a belief which had been generally accepted for at least 2,200 years before his time and used it to explain how evolution could have taken place. The inheritance of acquired characters had been accepted previously by Hippocrates, Aristotle, Galen, Roger Bacon, Jerome Cardan, Levinus Lemnius, John Ray, Michael Adanson, Jo. Fried. Blumenbach and Erasmus Darwin among others.

Zirkle noted that Hippocrates described pangenesis, the theory that what is inherited derives from the whole body of the parent, whereas Aristotle thought it impossible; but that all the same, Aristotle implicitly agreed to the inheritance of acquired characteristics, giving the example of the inheritance of a scar, or of blindness, though noting that children do not always resemble their parents. Zirkle recorded that Pliny the Elder thought much the same. Zirkle pointed out that stories involving the idea of inheritance of acquired characteristics appear numerous times in ancient mythology and the Bible and persisted through to Rudyard Kipling's Just So Stories. The idea is mentioned in 18th century sources such as Diderot's D'Alembert's Dream. Erasmus Darwin's Zoonomia (c. 1795) suggested that warm-blooded animals develop from "one living filament... with the power of acquiring new parts" in response to stimuli, with each round of "improvements" being inherited by successive generations.

Darwin's pangenesis

Charles Darwin's pangenesis theory. Every part of the body emits tiny gemmules which migrate to the gonads and contribute to the next generation via the fertilised egg. Changes to the body during an organism's life would be inherited, as in Lamarckism.

Charles Darwin's On the Origin of Species proposed natural selection as the main mechanism for development of species, but (like Lamarck) gave credence to the idea of heritable effects of use and disuse as a supplementary mechanism. Darwin subsequently set out his concept of pangenesis in the final chapter of his book The Variation of Animals and Plants Under Domestication (1868), which gave numerous examples to demonstrate what he thought was the inheritance of acquired characteristics. Pangenesis, which he emphasised was a hypothesis, was based on the idea that somatic cells would, in response to environmental stimulation (use and disuse), throw off 'gemmules' or 'pangenes' which travelled around the body, though not necessarily in the bloodstream. These pangenes were microscopic particles that supposedly contained information about the characteristics of their parent cell, and Darwin believed that they eventually accumulated in the germ cells where they could pass on to the next generation the newly acquired characteristics of the parents.

Darwin's half-cousin, Francis Galton, carried out experiments on rabbits, with Darwin's cooperation, in which he transfused the blood of one variety of rabbit into another variety in the expectation that its offspring would show some characteristics of the first. They did not, and Galton declared that he had disproved Darwin's hypothesis of pangenesis, but Darwin objected, in a letter to the scientific journal Nature, that he had done nothing of the sort, since he had never mentioned blood in his writings. He pointed out that he regarded pangenesis as occurring in protozoa and plants, which have no blood, as well as in animals.

Lamarck's evolutionary framework

Lamarck's two-factor theory involves 1) a complexifying force that drives animal body plans towards higher levels (orthogenesis) creating a ladder of phyla, and 2) an adaptive force that causes animals with a given body plan to adapt to circumstances (use and disuse, inheritance of acquired characteristics), creating a diversity of species and genera. Lamarckism is the name now widely used for the adaptive force.

Between 1800 and 1830, Lamarck proposed a systematic theoretical framework for understanding evolution. He saw evolution as comprising four laws:

  1. "Life by its own force, tends to increase the volume of all organs which possess the force of life, and the force of life extends the dimensions of those parts up to an extent that those parts bring to themselves;"
  2. "The production of a new organ in an animal body, results from a new requirement arising. and which continues to make itself felt, and a new movement which that requirement gives birth to, and its upkeep/maintenance;"
  3. "The development of the organs, and their ability, are constantly a result of the use of those organs."
  4. "All that has been acquired, traced, or changed, in the physiology of individuals, during their life, is conserved through the genesis, reproduction, and transmitted to new individuals who are related to those who have undergone those changes."

Lamarck's discussion of heredity

In 1830, in an aside from his evolutionary framework, Lamarck briefly mentioned two traditional ideas in his discussion of heredity, in his day considered to be generally true. The first was the idea of use versus disuse; he theorized that individuals lose characteristics they do not require, or use, and develop characteristics that are useful. The second was to argue that the acquired traits were heritable. He gave as an imagined illustration the idea that when giraffes stretch their necks to reach leaves high in trees, they would strengthen and gradually lengthen their necks. These giraffes would then have offspring with slightly longer necks. In the same way, he argued, a blacksmith, through his work, strengthens the muscles in his arms, and thus his sons would have similar muscular development when they mature. Lamarck stated the following two laws:

  1. Première Loi: Dans tout animal qui n' a point dépassé le terme de ses développemens, l' emploi plus fréquent et soutenu d' un organe quelconque, fortifie peu à peu cet organe, le développe, l' agrandit, et lui donne une puissance proportionnée à la durée de cet emploi; tandis que le défaut constant d' usage de tel organe, l'affoiblit insensiblement, le détériore, diminue progressivement ses facultés, et finit par le faire disparoître.
  2. Deuxième Loi: Tout ce que la nature a fait acquérir ou perdre aux individus par l' influence des circonstances où leur race se trouve depuis long-temps exposée, et, par conséquent, par l' influence de l' emploi prédominant de tel organe, ou par celle d' un défaut constant d' usage de telle partie; elle le conserve par la génération aux nouveaux individus qui en proviennent, pourvu que les changemens acquis soient communs aux deux sexes, ou à ceux qui ont produit ces nouveaux individus.

English translation:

  1. First Law [Use and Disuse]: In every animal which has not passed the limit of its development, a more frequent and continuous use of any organ gradually strengthens, develops and enlarges that organ, and gives it a power proportional to the length of time it has been so used; while the permanent disuse of any organ imperceptibly weakens and deteriorates it, and progressively diminishes its functional capacity, until it finally disappears.
  2. Second Law [Soft Inheritance]: All the acquisitions or losses wrought by nature on individuals, through the influence of the environment in which their race has long been placed, and hence through the influence of the predominant use or permanent disuse of any organ; all these are preserved by reproduction to the new individuals which arise, provided that the acquired modifications are common to both sexes, or at least to the individuals which produce the young.

In essence, a change in the environment brings about change in "needs" (besoins), resulting in change in behaviour, causing change in organ usage and development, bringing change in form over time—and thus the gradual transmutation of the species. As the evolutionary biologists and historians of science Conway Zirkle, Michael Ghiselin, and Stephen Jay Gould have pointed out, these ideas were not original to Lamarck.

Weismann's experiment

August Weismann's germ plasm theory. The hereditary material, the germ plasm, is confined to the gonads and the gametes. Somatic cells (of the body) develop afresh in each generation from the germ plasm, creating an invisible "Weismann barrier" to Lamarckian influence from the soma to the next generation.

August Weismann's germ plasm theory held that germline cells in the gonads contain information that passes from one generation to the next, unaffected by experience, and independent of the somatic (body) cells. This implied what came to be known as the Weismann barrier, as it would make Lamarckian inheritance from changes to the body difficult or impossible.

Weismann conducted the experiment of removing the tails of 68 white mice, and those of their offspring over five generations, and reporting that no mice were born in consequence without a tail or even with a shorter tail. In 1889, he stated that "901 young were produced by five generations of artificially mutilated parents, and yet there was not a single example of a rudimentary tail or of any other abnormality in this organ." The experiment, and the theory behind it, were thought at the time to be a refutation of Lamarckism.

The experiment's effectiveness in refuting Lamarck's hypothesis is doubtful, as it did not address the use and disuse of characteristics in response to the environment. The biologist Peter Gauthier noted in 1990 that:

Can Weismann's experiment be considered a case of disuse? Lamarck proposed that when an organ was not used, it slowly, and very gradually atrophied. In time, over the course of many generations, it would gradually disappear as it was inherited in its modified form in each successive generation. Cutting the tails off mice does not seem to meet the qualifications of disuse, but rather falls in a category of accidental misuse... Lamarck's hypothesis has never been proven experimentally and there is no known mechanism to support the idea that somatic change, however acquired, can in some way induce a change in the germplasm. On the other hand it is difficult to disprove Lamarck's idea experimentally, and it seems that Weismann's experiment fails to provide the evidence to deny the Lamarckian hypothesis, since it lacks a key factor, namely the willful exertion of the animal in overcoming environmental obstacles.

Ghiselin also considered the Weismann tail-chopping experiment to have no bearing on the Lamarckian hypothesis, writing in 1994 that:

The acquired characteristics that figured in Lamarck's thinking were changes that resulted from an individual's own drives and actions, not from the actions of external agents. Lamarck was not concerned with wounds, injuries or mutilations, and nothing that Lamarck had set forth was tested or "disproven" by the Weismann tail-chopping experiment.

The historian of science Rasmus Winther stated that Weismann had nuanced views about the role of the environment on the germ plasm. Indeed, like Darwin, he consistently insisted that a variable environment was necessary to cause variation in the hereditary material.

Textbook Lamarckism

The long neck of the giraffe is often used as an example in popular explanations of Lamarckism. However, this was only a small part of his theory of evolution towards "perfection"; it was a hypothetical illustration; and he used it to discuss his theory of heredity, not evolution.

The identification of Lamarckism with the inheritance of acquired characteristics is regarded by evolutionary biologists including Ghiselin as a falsified artifact of the subsequent history of evolutionary thought, repeated in textbooks without analysis, and wrongly contrasted with a falsified picture of Darwin's thinking. Ghiselin notes that "Darwin accepted the inheritance of acquired characteristics, just as Lamarck did, and Darwin even thought that there was some experimental evidence to support it." Gould wrote that in the late 19th century, evolutionists "re-read Lamarck, cast aside the guts of it ... and elevated one aspect of the mechanics—inheritance of acquired characters—to a central focus it never had for Lamarck himself." He argued that "the restriction of 'Lamarckism' to this relatively small and non-distinctive corner of Lamarck's thought must be labelled as more than a misnomer, and truly a discredit to the memory of a man and his much more comprehensive system."

Neo-Lamarckism

Context

Edward Drinker Cope

The period of the history of evolutionary thought between Darwin's death in the 1880s, and the foundation of population genetics in the 1920s and the beginnings of the modern evolutionary synthesis in the 1930s, is called the eclipse of Darwinism by some historians of science. During that time many scientists and philosophers accepted the reality of evolution but doubted whether natural selection was the main evolutionary mechanism.

Among the most popular alternatives were theories involving the inheritance of characteristics acquired during an organism's lifetime. Scientists who felt that such Lamarckian mechanisms were the key to evolution were called neo-Lamarckians. They included the British botanist George Henslow (1835–1925), who studied the effects of environmental stress on the growth of plants, in the belief that such environmentally-induced variation might explain much of plant evolution, and the American entomologist Alpheus Spring Packard Jr., who studied blind animals living in caves and wrote a book in 1901 about Lamarck and his work. Also included were paleontologists like Edward Drinker Cope and Alpheus Hyatt, who observed that the fossil record showed orderly, almost linear, patterns of development that they felt were better explained by Lamarckian mechanisms than by natural selection. Some people, including Cope and the Darwin critic Samuel Butler, felt that inheritance of acquired characteristics would let organisms shape their own evolution, since organisms that acquired new habits would change the use patterns of their organs, which would kick-start Lamarckian evolution. They considered this philosophically superior to Darwin's mechanism of random variation acted on by selective pressures. Lamarckism also appealed to those, like the philosopher Herbert Spencer and the German anatomist Ernst Haeckel, who saw evolution as an inherently progressive process. The German zoologist Theodor Eimer combined Larmarckism with ideas about orthogenesis, the idea that evolution is directed towards a goal.

With the development of the modern synthesis of the theory of evolution, and a lack of evidence for a mechanism for acquiring and passing on new characteristics, or even their heritability, Lamarckism largely fell from favour. Unlike neo-Darwinism, neo-Lamarckism is a loose grouping of largely heterodox theories and mechanisms that emerged after Lamarck's time, rather than a coherent body of theoretical work.

19th century

Charles-Édouard Brown-Séquard tried to demonstrate Lamarckism by mutilating guinea pigs.

Neo-Lamarckian versions of evolution were widespread in the late 19th century. The idea that living things could to some degree choose the characteristics that would be inherited allowed them to be in charge of their own destiny as opposed to the Darwinian view, which placed them at the mercy of the environment. Such ideas were more popular than natural selection in the late 19th century as it made it possible for biological evolution to fit into a framework of a divine or naturally willed plan, thus the neo-Lamarckian view of evolution was often advocated by proponents of orthogenesis. According to the historian of science Peter J. Bowler, writing in 2003:

One of the most emotionally compelling arguments used by the neo-Lamarckians of the late nineteenth century was the claim that Darwinism was a mechanistic theory which reduced living things to puppets driven by heredity. The selection theory made life into a game of Russian roulette, where life or death was predetermined by the genes one inherited. The individual could do nothing to mitigate bad heredity. Lamarckism, in contrast, allowed the individual to choose a new habit when faced with an environmental challenge and shape the whole future course of evolution.

Scientists from the 1860s onwards conducted numerous experiments that purported to show Lamarckian inheritance. Some examples are described in the table.

19th century experiments attempting to demonstrate Lamarckian inheritance
Scientist Date Experiment Claimed result Rebuttal
Charles-Édouard Brown-Séquard 1869 to 1891 Cut sciatic nerve and dorsal spinal cord of guinea pigs, causing abnormal nervous condition resembling epilepsy Epileptic offspring Not Lamarckism, as no use and disuse in response to environment; results could not be replicated; cause possibly a transmitted disease.
Gaston Bonnier 1884, 1886 Transplant plants at different altitudes in Alps, Pyrenees Acquired adaptations Not controlled from weeds; likely cause genetic contamination
Joseph Thomas Cunningham 1891, 1893, 1895 Shine light on underside of flatfish Inherited production of pigment Disputed cause
Max Standfuss 1892 to 1917 Raise butterflies at low temperature Variations in offspring even without low temperature Richard Goldschmidt agreed; Ernst Mayr "difficult to interpret".

Early 20th century

Paul Kammerer claimed in the 1920s to have found evidence for Lamarckian inheritance in midwife toads, in a case celebrated by the journalist Arthur Koestler, but the results are thought to be either fraudulent or at best misinterpreted.

A century after Lamarck, scientists and philosophers continued to seek mechanisms and evidence for the inheritance of acquired characteristics. Experiments were sometimes reported as successful, but from the beginning these were either criticised on scientific grounds or shown to be fakes. For instance, in 1906, the philosopher Eugenio Rignano argued for a version that he called "centro-epigenesis", but it was rejected by most scientists. Some of the experimental approaches are described in the table.

Early 20th century experiments attempting to demonstrate Lamarckian inheritance
Scientist Date Experiment Claimed result Rebuttal
William Lawrence Tower 1907 to 1910 Colorado potato beetles in extreme humidity, temperature Heritable changes in size, colour Criticised by William Bateson; Tower claimed all results lost in fire; William E. Castle visited laboratory, found fire suspicious, doubted claim that steam leak had killed all beetles, concluded faked data.
Gustav Tornier 1907 to 1918 Goldfish, embryos of frogs, newts Abnormalities inherited Disputed; possibly an osmotic effect
Charles Rupert Stockard 1910 Repeated alcohol intoxication of pregnant guinea pigs Inherited malformations Raymond Pearl unable to reproduce findings in chickens; Darwinian explanation
Francis Bertody Sumner 1921 Reared mice at different temperatures, humidities Inherited longer bodies, tails, hind feet Inconsistent results
Michael F. Guyer, Elizabeth A. Smith 1918 to 1924 Injected fowl serum antibodies for rabbit lens-protein into pregnant rabbits Eye defects inherited for 8 generations Disputed, results not replicated
Paul Kammerer 1920s Midwife toad Black foot-pads inherited Fraud, ink injected; or, results misinterpreted; case celebrated by Arthur Koestler arguing that opposition was political
William McDougall 1920s Rats solving mazes Offspring learnt mazes quicker (20 vs 165 trials) Poor experimental controls
John William Heslop-Harrison 1920s Peppered moths exposed to soot Inherited mutations caused by soot Failure to replicate results; implausible mutation rate
Ivan Pavlov 1926 Conditioned reflex in mice to food and bell Offspring easier to condition Pavlov retracted claim; results not replicable
Coleman Griffith, John Detlefson 1920 to 1925 Reared rats on rotating table for 3 months Inherited balance disorder Results not replicable; likely cause ear infection
Victor Jollos [pl] 1930s Heat treatment in Drosophila melanogaster Directed mutagenesis, a form of orthogenesis Results not replicable

Late 20th century

The British anthropologist Frederic Wood Jones and the South African paleontologist Robert Broom supported a neo-Lamarckian view of human evolution. The German anthropologist Hermann Klaatsch relied on a neo-Lamarckian model of evolution to try and explain the origin of bipedalism. Neo-Lamarckism remained influential in biology until the 1940s when the role of natural selection was reasserted in evolution as part of the modern evolutionary synthesis. Herbert Graham Cannon, a British zoologist, defended Lamarckism in his 1959 book Lamarck and Modern Genetics. In the 1960s, "biochemical Lamarckism" was advocated by the embryologist Paul Wintrebert.

Neo-Lamarckism was dominant in French biology for more than a century. French scientists who supported neo-Lamarckism included Edmond Perrier (1844–1921), Alfred Giard (1846–1908), Gaston Bonnier (1853–1922) and Pierre-Paul Grassé (1895–1985). They followed two traditions, one mechanistic, one vitalistic after Henri Bergson's philosophy of evolution.

In 1987, Ryuichi Matsuda coined the term "pan-environmentalism" for his evolutionary theory which he saw as a fusion of Darwinism with neo-Lamarckism. He held that heterochrony is a main mechanism for evolutionary change and that novelty in evolution can be generated by genetic assimilation. His views were criticized by Arthur M. Shapiro for providing no solid evidence for his theory. Shapiro noted that "Matsuda himself accepts too much at face value and is prone to wish-fulfilling interpretation."

Ideological neo-Lamarckism

Trofim Lysenko promoted an ideological form of neo-Lamarckism which adversely influenced Soviet agricultural policy in the 1930s.

A form of Lamarckism was revived in the Soviet Union of the 1930s when Trofim Lysenko promoted the ideologically driven research programme, Lysenkoism; this suited the ideological opposition of Joseph Stalin to genetics. Lysenkoism influenced Soviet agricultural policy which in turn was later blamed for the numerous massive crop failures experienced within Soviet states.

Critique

George Gaylord Simpson in his book Tempo and Mode in Evolution (1944) claimed that experiments in heredity have failed to corroborate any Lamarckian process. Simpson noted that neo-Lamarckism "stresses a factor that Lamarck rejected: inheritance of direct effects of the environment" and neo-Lamarckism is closer to Darwin's pangenesis than Lamarck's views. Simpson wrote, "the inheritance of acquired characters, failed to meet the tests of observation and has been almost universally discarded by biologists."

Zirkle pointed out that Lamarck did not originate the hypothesis that acquired characteristics could be inherited, so it is incorrect to refer to it as Lamarckism:

What Lamarck really did was to accept the hypothesis that acquired characters were heritable, a notion which had been held almost universally for well over two thousand years and which his contemporaries accepted as a matter of course, and to assume that the results of such inheritance were cumulative from generation to generation, thus producing, in time, new species. His individual contribution to biological theory consisted in his application to the problem of the origin of species of the view that acquired characters were inherited and in showing that evolution could be inferred logically from the accepted biological hypotheses. He would doubtless have been greatly astonished to learn that a belief in the inheritance of acquired characters is now labeled "Lamarckian," although he would almost certainly have felt flattered if evolution itself had been so designated.

Peter Medawar wrote regarding Lamarckism, "very few professional biologists believe that anything of the kind occurs—or can occur—but the notion persists for a variety of nonscientific reasons." Medawar stated there is no known mechanism by which an adaptation acquired in an individual's lifetime can be imprinted on the genome and Lamarckian inheritance is not valid unless it excludes the possibility of natural selection, but this has not been demonstrated in any experiment.

Martin Gardner wrote in his book Fads and Fallacies in the Name of Science (1957):

A host of experiments have been designed to test Lamarckianism. All that have been verified have proved negative. On the other hand, tens of thousands of experiments— reported in the journals and carefully checked and rechecked by geneticists throughout the world— have established the correctness of the gene-mutation theory beyond all reasonable doubt... In spite of the rapidly increasing evidence for natural selection, Lamarck has never ceased to have loyal followers.... There is indeed a strong emotional appeal in the thought that every little effort an animal puts forth is somehow transmitted to his progeny.

According to Ernst Mayr, any Lamarckian theory involving the inheritance of acquired characters has been refuted as "DNA does not directly participate in the making of the phenotype and that the phenotype, in turn, does not control the composition of the DNA." Peter J. Bowler has written that although many early scientists took Lamarckism seriously, it was discredited by genetics in the early twentieth century.

Mechanisms resembling Lamarckism

Studies in the field of epigenetics, genetics and somatic hypermutation have highlighted the possible inheritance of traits acquired by the previous generation. However, the characterization of these findings as Lamarckism has been disputed.

Transgenerational epigenetic inheritance

DNA molecule with epigenetic marks, created by methylation, enabling a neo-Lamarckian pattern of inheritance for some generations

Epigenetic inheritance has been argued by scientists including Eva Jablonka and Marion J. Lamb to be Lamarckian. Epigenetics is based on hereditary elements other than genes that pass into the germ cells. These include methylation patterns in DNA and chromatin marks on histone proteins, both involved in gene regulation. These marks are responsive to environmental stimuli, differentially affect gene expression, and are adaptive, with phenotypic effects that persist for some generations. The mechanism may also enable the inheritance of behavioral traits, for example in chickens, rats and human populations that have experienced starvation, DNA methylation resulting in altered gene function in both the starved population and their offspring. Methylation similarly mediates epigenetic inheritance in plants such as rice. Small RNA molecules, too, may mediate inherited resistance to infection. Handel and Ramagopalan commented that "epigenetics allows the peaceful co-existence of Darwinian and Lamarckian evolution."

Joseph Springer and Dennis Holley commented in 2013 that:

Lamarck and his ideas were ridiculed and discredited. In a strange twist of fate, Lamarck may have the last laugh. Epigenetics, an emerging field of genetics, has shown that Lamarck may have been at least partially correct all along. It seems that reversible and heritable changes can occur without a change in DNA sequence (genotype) and that such changes may be induced spontaneously or in response to environmental factors—Lamarck's "acquired traits." Determining which observed phenotypes are genetically inherited and which are environmentally induced remains an important and ongoing part of the study of genetics, developmental biology, and medicine.

The prokaryotic CRISPR system and Piwi-interacting RNA could be classified as Lamarckian, within a Darwinian framework. However, the significance of epigenetics in evolution is uncertain. Critics such as the evolutionary biologist Jerry Coyne point out that epigenetic inheritance lasts for only a few generations, so it is not a stable basis for evolutionary change.

The evolutionary biologist T. Ryan Gregory contends that epigenetic inheritance should not be considered Lamarckian. According to Gregory, Lamarck did not claim that the environment directly affected living things. Instead, Lamarck "argued that the environment created needs to which organisms responded by using some features more and others less, that this resulted in those features being accentuated or attenuated, and that this difference was then inherited by offspring." Gregory has stated that Lamarckian evolution in epigenetics is more like Darwin's point of view than Lamarck's.

In 2007, David Haig wrote that research into epigenetic processes does allow a Lamarckian element in evolution but the processes do not challenge the main tenets of the modern evolutionary synthesis as modern Lamarckians have claimed. Haig argued for the primacy of DNA and evolution of epigenetic switches by natural selection. Haig has written that there is a "visceral attraction" to Lamarckian evolution from the public and some scientists, as it posits the world with a meaning, in which organisms can shape their own evolutionary destiny.

Thomas Dickens and Qazi Rahman (2012) have argued that epigenetic mechanisms such as DNA methylation and histone modification are genetically inherited under the control of natural selection and do not challenge the modern synthesis. They dispute the claims of Jablonka and Lamb on Lamarckian epigenetic processes.

Edward J. Steele's disputed Neo-Lamarckian mechanism involves somatic hypermutation and reverse transcription by a retrovirus to breach the Weismann barrier to germline DNA.

In 2015, Khursheed Iqbal and colleagues discovered that although "endocrine disruptors exert direct epigenetic effects in the exposed fetal germ cells, these are corrected by reprogramming events in the next generation." Also in 2015, Adam Weiss argued that bringing back Lamarck in the context of epigenetics is misleading, commenting, "We should remember [Lamarck] for the good he contributed to science, not for things that resemble his theory only superficially. Indeed, thinking of CRISPR and other phenomena as Lamarckian only obscures the simple and elegant way evolution really works."

Somatic hypermutation and reverse transcription to germline

In the 1970s, the Australian immunologist Edward J. Steele developed a neo-Lamarckian theory of somatic hypermutation within the immune system and coupled it to the reverse transcription of RNA derived from body cells to the DNA of germline cells. This reverse transcription process supposedly enabled characteristics or bodily changes acquired during a lifetime to be written back into the DNA and passed on to subsequent generations.

The mechanism was meant to explain why homologous DNA sequences from the VDJ gene regions of parent mice were found in their germ cells and seemed to persist in the offspring for a few generations. The mechanism involved the somatic selection and clonal amplification of newly acquired antibody gene sequences generated via somatic hypermutation in B-cells. The messenger RNA products of these somatically novel genes were captured by retroviruses endogenous to the B-cells and were then transported through the bloodstream where they could breach the Weismann or soma-germ barrier and reverse transcribe the newly acquired genes into the cells of the germ line, in the manner of Darwin's pangenes.

Neo-Lamarckian inheritance of hologenome

The historian of biology Peter J. Bowler noted in 1989 that other scientists had been unable to reproduce his results, and described the scientific consensus at the time:

There is no feedback of information from the proteins to the DNA, and hence no route by which characteristics acquired in the body can be passed on through the genes. The work of Ted Steele (1979) provoked a flurry of interest in the possibility that there might, after all, be ways in which this reverse flow of information could take place. ... [His] mechanism did not, in fact, violate the principles of molecular biology, but most biologists were suspicious of Steele's claims, and attempts to reproduce his results have failed.

Bowler commented that "[Steele's] work was bitterly criticized at the time by biologists who doubted his experimental results and rejected his hypothetical mechanism as implausible."

Hologenome theory of evolution

The hologenome theory of evolution, while Darwinian, has Lamarckian aspects. An individual animal or plant lives in symbiosis with many microorganisms, and together they have a "hologenome" consisting of all their genomes. The hologenome can vary like any other genome by mutation, sexual recombination, and chromosome rearrangement, but in addition it can vary when populations of microorganisms increase or decrease (resembling Lamarckian use and disuse), and when it gains new kinds of microorganism (resembling Lamarckian inheritance of acquired characteristics). These changes are then passed on to offspring. The mechanism is largely uncontroversial, and natural selection does sometimes occur at whole system (hologenome) level, but it is not clear that this is always the case.

Lamarckian use and disuse compared to Darwinian evolution, the Baldwin effect, and Waddington's genetic assimilation. All the theories offer explanations of how organisms respond to a changed environment with adaptive inherited change.

Baldwin effect

The Baldwin effect, named after the psychologist James Mark Baldwin by George Gaylord Simpson in 1953, proposes that the ability to learn new behaviours can improve an animal's reproductive success, and hence the course of natural selection on its genetic makeup. Simpson stated that the mechanism was "not inconsistent with the modern synthesis" of evolutionary theory, though he doubted that it occurred very often or could be proven to occur. He noted that the Baldwin effect provided a reconciliation between the neo-Darwinian and neo-Lamarckian approaches, something that the modern synthesis had seemed to render unnecessary. In particular, the effect allows animals to adapt to a new stress in the environment through behavioural changes, followed by genetic change. This somewhat resembles Lamarckism but without requiring animals to inherit characteristics acquired by their parents. The Baldwin effect is broadly accepted by Darwinists.

In sociocultural evolution

Within the field of cultural evolution, Lamarckism has been applied as a mechanism for dual inheritance theory. Gould viewed culture as a Lamarckian process whereby older generations transmitted adaptive information to offspring via the concept of learning. In the history of technology, components of Lamarckism have been used to link cultural development to human evolution by considering technology as extensions of human anatomy.

Neural engineering

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