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Tuesday, December 25, 2018

Genetically modified crops (updated)

From Wikipedia, the free encyclopedia

Genetically modified crops (GM crops or biotech crops) are plants used in agriculture, the DNA of which has been modified using genetic engineering methods. In most cases, the aim is to introduce a new trait to the plant which does not occur naturally in the species. Examples in food crops include resistance to certain pests, diseases, environmental conditions, reduction of spoilage, resistance to chemical treatments (e.g. resistance to a herbicide), or improving the nutrient profile of the crop. Examples in non-food crops include production of pharmaceutical agents, biofuels, and other industrially useful goods, as well as for bioremediation.
 
Farmers have widely adopted GM technology. Acreage increased from 1.7 million hectares in 1996 to 185.1 million hectares in 2016, some 12% of global cropland. As of 2016, major crop (soybean, maize, canola and cotton) traits consist of herbicide tolerance (95.9 million hectares) insect resistance (25.2 million hectares), or both (58.5 million hectares). In 2015, 53.6 million ha of GM maize were under cultivation (almost 1/3 of the maize crop). GM maize outperformed its predecessors: yield was 5.6 to 24.5% higher with less mycotoxins (−28.8%), fumonisin (−30.6%) and thricotecens (−36.5%). Non-target organisms were unaffected, except for Braconidae, represented by a parasitoid of European corn borer, the target of Lepidoptera active Bt maize. Biogeochemical parameters such as lignin content did not vary, while biomass decomposition was higher.

A 2014 meta-analysis concluded that GM technology adoption had reduced chemical pesticide use by 37%, increased crop yields by 22%, and increased farmer profits by 68%. This reduction in pesticide use has been ecologically beneficial, but benefits may be reduced by overuse. Yield gains and pesticide reductions are larger for insect-resistant crops than for herbicide-tolerant crops. Yield and profit gains are higher in developing countries than in developed countries.

There is a scientific consensus that currently available food derived from GM crops poses no greater risk to human health than conventional food, but that each GM food needs to be tested on a case-by-case basis before introduction. Nonetheless, members of the public are much less likely than scientists to perceive GM foods as safe. The legal and regulatory status of GM foods varies by country, with some nations banning or restricting them, and others permitting them with widely differing degrees of regulation.

However, opponents have objected to GM crops on grounds including environmental impacts, food safety, whether GM crops are needed to address food needs, whether they are sufficiently accessible to farmers in developing countries and concerns over subjecting crops to intellectual property law. Safety concerns led 38 countries, including 19 in Europe, to officially prohibit their cultivation.

History

Nature and traditional agriculture

Multiple natural mechanisms allow gene flow from one species to another. These occur in nature on a large scale – for example, it is one mechanism for the development of antibiotic resistance in bacteria. This is facilitated by transposons, retrotransposons, retroviruses, proviruses and other mobile genetic elements that naturally translocate DNA to new loci in a genome. Movement occurs over an evolutionary time scale.

Traditional crop breeders have long introduced foreign germplasm into crops by creating novel crosses. A hybrid cereal grain was created in 1875, by crossing wheat and rye. Since then traits including dwarfing genes and rust resistance have been introduced in that manner. Plant tissue culture and deliberate mutations have enabled humans to alter the makeup of plant genomes.

Direct manipulation

The term genetic engineering is applied to genetic modifications made using biotechnology. The first plant produced in that way came in 1982, an antibiotic-resistant tobacco plant. The first field trials occurred in France and the USA in 1986, using tobacco plants engineered for herbicide resistance. In 1987, Plant Genetic Systems (Ghent, Belgium), founded by Marc Van Montagu and Jeff Schell, was the first company to genetically engineer insect-resistant (tobacco) plants by incorporating genes that produced insecticidal proteins from Bacillus thuringiensis (Bt).

The People's Republic of China was the first country to allow commercialized transgenic plants, introducing a virus-resistant tobacco in 1992, which was withdrawn in 1997. The first genetically modified crop approved for sale in the U.S., in 1994, was the FlavrSavr tomato. It had a longer shelf life, because it took longer to soften after ripening. In 1994, the European Union approved tobacco engineered to tolerate the herbicide bromoxynil, making it the first commercially genetically engineered crop marketed in Europe.

In 1995, Bt Potato was approved by the US Environmental Protection Agency, making it the country's first-pesticide producing crop. In 1995 canola with modified oil composition (Calgene), Bt maize (Ciba-Geigy), bromoxynil-tolerant cotton (Calgene), Bt cotton (Monsanto), glyphosate-tolerant soybeans (Monsanto), virus-tolerant squash (Asgrow), and additional delayed ripening tomatoes (DNAP, Zeneca/Peto and Monsanto) were approved. As of mid-1996, 35 approvals had been granted to commercially grow 8 transgenic crops and one flower crop (carnation), with 8 different traits in 6 countries plus the EU. In 2000, Vitamin A-enriched golden rice was developed, though as of 2016 it was not yet in commercial production.

In 2013 the leaders of the three research teams that first applied genetic engineering to crops, Robert Fraley, Marc Van Montagu and Mary-Dell Chilton, were awarded the World Food Prize for improving the "quality, quantity or availability" of food in the world.

In the US, by 2014, 94% of the planted area of soybeans, 96% of cotton and 93% of corn were genetically modified varieties. In developing countries, about 18 million farmers planted 54% of GM crops worldwide by 2013.

Methods

Plants (Solanum chacoense) being transformed using agrobacterium

Genetically engineered crops have genes added or removed using genetic engineering techniques, originally including gene guns, electroporation, microinjection and agrobacterium. More recently, CRISPR and TALEN offered much more precise and convenient editing techniques. 

Gene guns (also known as biolistics) "shoot" (direct high energy particles or radiations against) target genes into plant cells. It is the most common method. DNA is bound to tiny particles of gold or tungsten which are subsequently shot into plant tissue or single plant cells under high pressure. The accelerated particles penetrate both the cell wall and membranes. The DNA separates from the metal and is integrated into plant DNA inside the nucleus. This method has been applied successfully for many cultivated crops, especially monocots like wheat or maize, for which transformation using Agrobacterium tumefaciens has been less successful. The major disadvantage of this procedure is that serious damage can be done to the cellular tissue.

Agrobacterium tumefaciens-mediated transformation is another common technique. Agrobacteria are natural plant parasites. Their natural ability to transfer genes provides another engineering method. To create a suitable environment for themselves, these Agrobacteria insert their genes into plant hosts, resulting in a proliferation of modified plant cells near the soil level (crown gall). The genetic information for tumor growth is encoded on a mobile, circular DNA fragment (plasmid). When Agrobacterium infects a plant, it transfers this T-DNA to a random site in the plant genome. When used in genetic engineering the bacterial T-DNA is removed from the bacterial plasmid and replaced with the desired foreign gene. The bacterium is a vector, enabling transportation of foreign genes into plants. This method works especially well for dicotyledonous plants like potatoes, tomatoes, and tobacco. Agrobacteria infection is less successful in crops like wheat and maize. 

Electroporation is used when the plant tissue does not contain cell walls. In this technique, "DNA enters the plant cells through miniature pores which are temporarily caused by electric pulses."
Microinjection is used to directly inject foreign DNA into cells.

Plant scientists, backed by results of modern comprehensive profiling of crop composition, point out that crops modified using GM techniques are less likely to have unintended changes than are conventionally bred crops.

In research tobacco and Arabidopsis thaliana are the most frequently modified plants, due to well-developed transformation methods, easy propagation and well studied genomes. They serve as model organisms for other plant species. 

Introducing new genes into plants requires a promoter specific to the area where the gene is to be expressed. For instance, to express a gene only in rice grains and not in leaves, an endosperm-specific promoter is used. The codons of the gene must be optimized for the organism due to codon usage bias.

Types of modifications

Transgenic maize containing a gene from the bacteria Bacillus thuringiensis

Transgenic

Transgenic plants have genes inserted into them that are derived from another species. The inserted genes can come from species within the same kingdom (plant to plant) or between kingdoms (for example, bacteria to plant). In many cases the inserted DNA has to be modified slightly in order to correctly and efficiently express in the host organism. Transgenic plants are used to express proteins like the cry toxins from B. thuringiensis, herbicide resistant genes, antibodies and antigens for vaccinations A study led by the European Food Safety Authority (EFSA) found also viral genes in transgenic plants.

Transgenic carrots have been used to produce the drug Taliglucerase alfa which is used to treat Gaucher's disease. In the laboratory, transgenic plants have been modified to increase photosynthesis (currently about 2% at most plants versus the theoretic potential of 9–10%). This is possible by changing the rubisco enzyme (i.e. changing C3 plants into C4 plants), by placing the rubisco in a carboxysome, by adding CO2 pumps in the cell wall, by changing the leaf form/size. Plants have been engineered to exhibit bioluminescence that may become a sustainable alternative to electric lighting.

Cisgenic

Cisgenic plants are made using genes found within the same species or a closely related one, where conventional plant breeding can occur. Some breeders and scientists argue that cisgenic modification is useful for plants that are difficult to crossbreed by conventional means (such as potatoes), and that plants in the cisgenic category should not require the same regulatory scrutiny as transgenics.

Subgenic

Genetically modified plants can also be developed using gene knockdown or gene knockout to alter the genetic makeup of a plant without incorporating genes from other plants. In 2014, Chinese researcher Gao Caixia filed patents on the creation of a strain of wheat that is resistant to powdery mildew. The strain lacks genes that encode proteins that repress defenses against the mildew. The researchers deleted all three copies of the genes from wheat's hexaploid genome. Gao used the TALENs and CRISPR gene editing tools without adding or changing any other genes. No field trials were immediately planned. The CRISPR technique has also been used by Penn State researcher Yinong Yang to modify white button mushrooms (Agaricus bisporus) to be non-browning, and by DuPont Pioneer to make a new variety of corn.

Multiple trait integration

With multiple trait integration, several new traits may be integrated into a new crop.

Economics

GM food's economic value to farmers is one of its major benefits, including in developing nations. A 2010 study found that Bt corn provided economic benefits of $6.9 billion over the previous 14 years in five Midwestern states. The majority ($4.3 billion) accrued to farmers producing non-Bt corn. This was attributed to European corn borer populations reduced by exposure to Bt corn, leaving fewer to attack conventional corn nearby. Agriculture economists calculated that "world surplus [increased by] $240.3 million for 1996. Of this total, the largest share (59%) went to U.S. farmers. Seed company Monsanto received the next largest share (21%), followed by US consumers (9%), the rest of the world (6%), and the germplasm supplier, Delta & Pine Land Company of Mississippi (5%)."

According to the International Service for the Acquisition of Agri-biotech Applications (ISAAA), in 2014 approximately 18 million farmers grew biotech crops in 28 countries; about 94% of the farmers were resource-poor in developing countries. 53% of the global biotech crop area of 181.5 million hectares was grown in 20 developing countries. PG Economics comprehensive 2012 study concluded that GM crops increased farm incomes worldwide by $14 billion in 2010, with over half this total going to farmers in developing countries.

Critics challenged the claimed benefits to farmers over the prevalence of biased observers and by the absence of randomized controlled trials. The main Bt crop grown by small farmers in developing countries is cotton. A 2006 review of Bt cotton findings by agricultural economists concluded, "the overall balance sheet, though promising, is mixed. Economic returns are highly variable over years, farm type, and geographical location".

In 2013 the European Academies Science Advisory Council (EASAC) asked the EU to allow the development of agricultural GM technologies to enable more sustainable agriculture, by employing fewer land, water, and nutrient resources. EASAC also criticizes the EU's "time-consuming and expensive regulatory framework" and said that the EU had fallen behind in the adoption of GM technologies.

Participants in agriculture business markets include seed companies, agrochemical companies, distributors, farmers, grain elevators and universities that develop new crops/traits and whose agricultural extensions advise farmers on best practices. According to a 2012 review based on data from the late 1990s and early 2000s, much of the GM crop grown each year is used for livestock feed and increased demand for meat leads to increased demand for GM feed crops. Feed grain usage as a percentage of total crop production is 70% for corn and more than 90% of oil seed meals such as soybeans. About 65 million metric tons of GM corn grains and about 70 million metric tons of soybean meals derived from GM soybean become feed.

In 2014 the global value of biotech seed was US$15.7 billion; US$11.3 billion (72%) was in industrial countries and US$4.4 billion (28%) was in the developing countries. In 2009, Monsanto had $7.3 billion in sales of seeds and from licensing its technology; DuPont, through its Pioneer subsidiary, was the next biggest company in that market. As of 2009, the overall Roundup line of products including the GM seeds represented about 50% of Monsanto's business.

Some patents on GM traits have expired, allowing the legal development of generic strains that include these traits. For example, generic glyphosate-tolerant GM soybean is now available. Another impact is that traits developed by one vendor can be added to another vendor's proprietary strains, potentially increasing product choice and competition. The patent on the first type of Roundup Ready crop that Monsanto produced (soybeans) expired in 2014 and the first harvest of off-patent soybeans occurs in the spring of 2015. Monsanto has broadly licensed the patent to other seed companies that include the glyphosate resistance trait in their seed products. About 150 companies have licensed the technology, including Syngenta and DuPont Pioneer.

Yield

In 2014, the largest review yet concluded that GM crops' effects on farming were positive. The meta-analysis considered all published English-language examinations of the agronomic and economic impacts between 1995 and March 2014 for three major GM crops: soybean, maize, and cotton. The study found that herbicide-tolerant crops have lower production costs, while for insect-resistant crops the reduced pesticide use was offset by higher seed prices, leaving overall production costs about the same.

Yields increased 9% for herbicide tolerance and 25% for insect resistant varieties. Farmers who adopted GM crops made 69% higher profits than those who did not. The review found that GM crops help farmers in developing countries, increasing yields by 14 percentage points.

The researchers considered some studies that were not peer-reviewed and a few that did not report sample sizes. They attempted to correct for publication bias, by considering sources beyond academic journals. The large data set allowed the study to control for potentially confounding variables such as fertilizer use. Separately, they concluded that the funding source did not influence study results.

Traits

GM crops grown today, or under development, have been modified with various traits. These traits include improved shelf life, disease resistance, stress resistance, herbicide resistance, pest resistance, production of useful goods such as biofuel or drugs, and ability to absorb toxins and for use in bioremediation of pollution. 

Recently, research and development has been targeted to enhancement of crops that are locally important in developing countries, such as insect-resistant cowpea for Africa and insect-resistant brinjal (eggplant).

Extended shelf life

The first genetically modified crop approved for sale in the U.S. was the FlavrSavr tomato, which had a longer shelf life. First sold in 1994, FlavrSavr tomato production ceased in 1997. It is no longer on the market. 

In November 2014, the USDA approved a GM potato that prevents bruising.

In February 2015 Arctic Apples were approved by the USDA, becoming the first genetically modified apple approved for US sale. Gene silencing was used to reduce the expression of polyphenol oxidase (PPO), thus preventing enzymatic browning of the fruit after it has been sliced open. The trait was added to Granny Smith and Golden Delicious varieties. The trait includes a bacterial antibiotic resistance gene that provides resistance to the antibiotic kanamycin. The genetic engineering involved cultivation in the presence of kanamycin, which allowed only resistant cultivars to survive. Humans consuming apples do not acquire kanamycin resistance, per arcticapple.com. The FDA approved the apples in March 2015.

Improved photosynthesis

Plants use non-photochemical quenching (NPQ) to protect them from excessive amounts of sunlight. Plants can switch on the quenching mechanism almost instantaneously but it takes much longer for it to switch off again. During the time that it is switched off, the amount of energy that is wasted increases.[citation needed] A genetic modification in three genes allows to correct this (in a trial with tobacco plants). As a result, yields were 14-20% higher, in terms of the weight of the dry leaves harvested. The plants had bigger leaves, were taller and had more vigorous roots.

Another improvement that can be made on the photosynthesis process (with C3 pathway plants) is on photorespiration. By inserting the C4 pathway into C3 plants, productivity may increase by as much as 50% for cereal crops, such as rice.

Improved nutritional value

Edible oils

Some GM soybeans offer improved oil profiles for processing. Camelina sativa has been modified to produce plants that accumulate high levels of oils similar to fish oils.

Vitamin enrichment

Golden rice, developed by the International Rice Research Institute (IRRI), provides greater amounts of vitamin A targeted at reducing vitamin A deficiency. As of January 2016, golden rice has not yet been grown commercially in any country.

Toxin reduction

A genetically modified cassava under development offers lower cyanogen glucosides and enhanced protein and other nutrients (called BioCassava).

In November 2014, the USDA approved a potato that prevents bruising and produces less acrylamide when fried. They do not employ genes from non-potato species. The trait was added to the Russet Burbank, Ranger Russet and Atlantic varieties.

Stress resistance

Plants have been engineered to tolerate non-biological stressors, such as drought, frost, and high soil salinity. In 2011, Monsanto's DroughtGard maize became the first drought-resistant GM crop to receive US marketing approval.

Drought resistance occurs by modifying the plant's genes responsible for the mechanism known as the crassulacean acid metabolism (CAM), which allows the plants to survive despite low water levels. This holds promise for water-heavy crops such as rice, wheat, soybeans and poplar to accelerate their adaptation to water-limited environments. Several salinity tolerance mechanisms have been identified in salt-tolerant crops. For example, rice, canola and tomato crops have been genetically modified to increase their tolerance to salt stress.

Herbicides

Glyphosate
As of 1999, the most prevalent GM trait was glyphosate-tolerance. Glyphosate (the active ingredient in Roundup and other herbicide products) kills plants by interfering with the shikimate pathway in plants, which is essential for the synthesis of the aromatic amino acids phenylalanine, tyrosine, and tryptophan. The shikimate pathway is not present in animals, which instead obtain aromatic amino acids from their diet. More specifically, glyphosate inhibits the enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS). 

This trait was developed because the herbicides used on grain and grass crops at the time were highly toxic and not effective against narrow-leaved weeds. Thus, developing crops that could withstand spraying with glyphosate would both reduce environmental and health risks, and give an agricultural edge to the farmer.

Some micro-organisms have a version of EPSPS that is resistant to glyphosate inhibition. One of these was isolated from an Agrobacterium strain CP4 (CP4 EPSPS) that was resistant to glyphosate. The CP4 EPSPS gene was engineered for plant expression by fusing the 5' end of the gene to a chloroplast transit peptide derived from the petunia EPSPS. This transit peptide was used because it had shown previously an ability to deliver bacterial EPSPS to the chloroplasts of other plants. This CP4 EPSPS gene was cloned and transfected into soybeans

The plasmid used to move the gene into soybeans was PV-GMGTO4. It contained three bacterial genes, two CP4 EPSPS genes, and a gene encoding beta-glucuronidase (GUS) from Escherichia coli as a marker. The DNA was injected into the soybeans using the particle acceleration method. Soybean cultivar A54O3 was used for the transformation.
Bromoxynil
Tobacco plants have been engineered to be resistant to the herbicide bromoxynil.
Glufosinate
Crops have been commercialized that are resistant to the herbicide glufosinate, as well. Crops engineered for resistance to multiple herbicides to allow farmers to use a mixed group of two, three, or four different chemicals are under development to combat growing herbicide resistance.
2,4-D
In October 2014 the US EPA registered Dow's Enlist Duo maize, which is genetically modified to be resistant to both glyphosate and 2,4-D, in six states. Inserting a bacterial aryloxyalkanoate dioxygenase gene, aad1 makes the corn resistant to 2,4-D. The USDA had approved maize and soybeans with the mutation in September 2014.
Dicamba
Monsanto has requested approval for a stacked strain that is tolerant of both glyphosate and dicamba. The request includes plans for avoiding herbicide drift to other crops. Significant damage to other non-resistant crops occurred from dicamba formulations intended to reduce volatilization drifting when sprayed on resistant soybeans in 2017. The newer dicamba formulation labels specify to not spray when average wind speeds are above 10–15 miles per hour (16–24 km/h) to avoid particle drift, average wind speeds below 3 miles per hour (4.8 km/h) to avoid temperature inversions, and rain or high temperatures are in the next day forecast. However, these conditions typically only occur during June and July for a few hours at a time.

Pest resistance

Insects

Tobacco, corn, rice and some other crops have been engineered to express genes encoding for insecticidal proteins from Bacillus thuringiensis (Bt). The introduction of Bt crops during the period between 1996 and 2005 has been estimated to have reduced the total volume of insecticide active ingredient use in the United States by over 100 thousand tons. This represents a 19.4% reduction in insecticide use.

In the late 1990s, a genetically modified potato that was resistant to the Colorado potato beetle was withdrawn because major buyers rejected it, fearing consumer opposition.

Viruses

Papaya, potatoes, and squash have been engineered to resist viral pathogens such as cucumber mosaic virus which, despite its name, infects a wide variety of plants. Virus resistant papaya were developed in response to a papaya ringspot virus (PRV) outbreak in Hawaii in the late 1990s. They incorporate PRV DNA. By 2010, 80% of Hawaiian papaya plants were genetically modified.

Potatoes were engineered for resistance to potato leaf roll virus and Potato virus Y in 1998. Poor sales led to their market withdrawal after three years.

Yellow squash that were resistant to at first two, then three viruses were developed, beginning in the 1990s. The viruses are watermelon, cucumber and zucchini/courgette yellow mosaic. Squash was the second GM crop to be approved by US regulators. The trait was later added to zucchini.

Many strains of corn have been developed in recent years to combat the spread of Maize dwarf mosaic virus, a costly virus that causes stunted growth which is carried in Johnson grass and spread by aphid insect vectors. These strands are commercially available although the resistance is not standard among GM corn variants.

By-products

Drugs

In 2012, the FDA approved the first plant-produced pharmaceutical, a treatment for Gaucher's Disease. Tobacco plants have been modified to produce therapeutic antibodies.

Biofuel

Algae is under development for use in biofuels. Researchers in Singapore were working on GM jatropha for biofuel production. Syngenta has USDA approval to market a maize trademarked Enogen that has been genetically modified to convert its starch to sugar for ethanol. Some trees have been genetically modified to either have less lignin, or to express lignin with chemically labile bonds. Lignin is the critical limiting factor when using wood to make bio-ethanol because lignin limits the accessibility of cellulose microfibrils to depolymerization by enzymes. Besides with trees, the chemically labile lignin bonds are also very useful for cereal crops such as maize, barley, and oats.

Materials

Companies and labs are working on plants that can be used to make bioplastics. Potatoes that produce industrially useful starches have been developed as well. Oilseed can be modified to produce fatty acids for detergents, substitute fuels and petrochemicals.

Bioremediation

Scientists at the University of York developed a weed (Arabidopsis thaliana) that contains genes from bacteria that could clean TNT and RDX-explosive soil contaminants in 2011. 16 million hectares in the US (1.5% of the total surface) are estimated to be contaminated with TNT and RDX. However A. thaliana was not tough enough for use on military test grounds. Modifications in 2016 included switchgrass and bentgrass.

Genetically modified plants have been used for bioremediation of contaminated soils. Mercury, selenium and organic pollutants such as polychlorinated biphenyls (PCBs).

Marine environments are especially vulnerable since pollution such as oil spills are not containable. In addition to anthropogenic pollution, millions of tons of petroleum annually enter the marine environment from natural seepages. Despite its toxicity, a considerable fraction of petroleum oil entering marine systems is eliminated by the hydrocarbon-degrading activities of microbial communities. Particularly successful is a recently discovered group of specialists, the so-called hydrocarbonoclastic bacteria (HCCB) that may offer useful genes.

Asexual reproduction

Crops such as maize reproduce sexually each year. This randomizes which genes get propagated to the next generation, meaning that desirable traits can be lost. To maintain a high-quality crop, some farmers purchase seeds every year. Typically, the seed company maintains two inbred varieties and crosses them into a hybrid strain that is then sold. Related plants like sorghum and gamma grass are able to perform apomixis, a form of asexual reproduction that keeps the plant's DNA intact. This trait is apparently controlled by a single dominant gene, but traditional breeding has been unsuccessful in creating asexually-reproducing maize. Genetic engineering offers another route to this goal. Successful modification would allow farmers to replant harvested seeds that retain desirable traits, rather than relying on purchased seed.

Other

Genetic modifications to some crops also exist, which make it easier to process the crop. For instance, the "no tears" onion prevents the synthesis of lachrymatory factor synthase in onions (otherwise put, it does not irritate the eyes when the onion is cut.

Also, some crops (such as tomatoes) have been genetic modified to contain no seed at all.

Crops

Herbicide tolerance

Crop Use Countries approved in First approved Notes
Alfalfa Animal feed US 2005 Approval withdrawn in 2007 then re-approved in 2011
Canola Cooking oil Margarine
Emulsifiers in packaged foods
Australia 2003
Canada 1995
US 1995
Cotton Fiber
Cottonseed oil
Animal feed
Argentina 2001
Australia 2002
Brazil 2008
Colombia 2004
Costa Rica 2008
Mexico 2000
Paraguay 2013
South Africa 2000
US 1994
Maize Animal feed high-fructose corn syrup
corn starch
Argentina 1998
Brazil 2007
Canada 1996
Colombia 2007
Cuba 2011
European Union 1998 Grown in Portugal, Spain, Czech Republic, Slovakia and Romania
Honduras 2001
Paraguay 2012
Philippines 2002
South Africa 2002
US 1995
Uruguay 2003
Soybean Animal feed Soybean oil
Argentina 1996
Bolivia 2005
Brazil 1998
Canada 1995
Chile 2007
Costa Rica 2001
Mexico 1996
Paraguay 2004
South Africa 2001
US 1993
Uruguay 1996
Sugar Beet Food Canada 2001
US 1998 Commercialized 2007, production blocked 2010, resumed 2011.

Insect resistance

Crop Use Countries approved in First approved Notes
Cotton Fiber
Cottonseed oil
Animal feed
Argentina 1998
Australia 2003
Brazil 2005
Burkina Faso 2009
China 1997
Colombia 2003
Costa Rica 2008
India 2002 Largest producer of Bt cotton
Mexico 1996
Myanmar 2006
Pakistan 2010
Paraguay 2007
South Africa 1997
Sudan 2012
US 1995
Eggplant Food Bangladesh 2013 12 ha planted on 120 farms in 2014
Maize Animal feed high-fructose corn syrup
corn starch
Argentina 1998
Brazil 2005
Colombia 2003
Mexico 1996 Center of origin for maize
Paraguay 2007
Philippines 2002
South Africa 1997
Uruguay 2003
US 1995
Poplar Tree China 1998 543 ha of bt poplar planted in 2014

Other modified traits

Crop Use Trait Countries approved in First approved Notes
Canola Cooking oil Margarine
Emulsifiers in packaged foods
High laurate canola Canada 1996
US 1994
Phytase production US 1998
Carnation Ornamental Delayed senescence Australia 1995
Norway 1998
Modified flower colour Australia 1995
Colombia 2000 In 2014 4 ha were grown in greenhouses for export
European Union 1998 Two events expired 2008, another approved 2007
Japan 2004
Malaysia 2012 For ornamental purposes
Norway 1997
Maize Animal feed high-fructose corn syrup
corn starch
Increased lysine Canada 2006
US 2006
Drought tolerance Canada 2010
US 2011
Papaya Food Virus resistance China 2006
US 1996 Mostly grown in Hawaii
Petunia Ornamental Modified flower color China 1997
Potato Food Virus resistance Canada 1999
US 1997
Industrial Modified starch US 2014
Rose Ornamental Modified flower colour Australia 2009 Surrendered renewal
Colombia 2010 Greenhouse cultivation for export only.
Japan 2008
US 2011
Soybean Animal feed Soybean oil
Increased oleic acid production Argentina 2015
Canada 2000
US 1997
Stearidonic acid production Canada 2011
US 2011
Squash Food Virus resistance US 1994
Sugar Cane Food Drought tolerance Indonesia 2013 Environmental certificate only
Tobacco Cigarettes Nicotine reduction US 2002

Development

The number of USDA-approved field releases for testing grew from 4 in 1985 to 1,194 in 2002 and averaged around 800 per year thereafter. The number of sites per release and the number of gene constructs (ways that the gene of interest is packaged together with other elements) – have rapidly increased since 2005. Releases with agronomic properties (such as drought resistance) jumped from 1,043 in 2005 to 5,190 in 2013. As of September 2013, about 7,800 releases had been approved for corn, more than 2,200 for soybeans, more than 1,100 for cotton, and about 900 for potatoes. Releases were approved for herbicide tolerance (6,772 releases), insect resistance (4,809), product quality such as flavor or nutrition (4,896), agronomic properties like drought resistance (5,190), and virus/fungal resistance (2,616). The institutions with the most authorized field releases include Monsanto with 6,782, Pioneer/DuPont with 1,405, Syngenta with 565, and USDA’s Agricultural Research Service with 370. As of September 2013 USDA had received proposals for releasing GM rice, squash, plum, rose, tobacco, flax, and chicory.

Farming practices

Resistance

Bacillus thuringiensis

Constant exposure to a toxin creates evolutionary pressure for pests resistant to that toxin. Over-reliance on glyphosate and a reduction in the diversity of weed management practices allowed the spread of glyphosate resistance in 14 weed species in the US, and in soybeans.

To reduce resistance to Bacillus thuringiensis (Bt) crops, the 1996 commercialization of transgenic cotton and maize came with a management strategy to prevent insects from becoming resistant. Insect resistance management plans are mandatory for Bt crops. The aim is to encourage a large population of pests so that any (recessive) resistance genes are diluted within the population. Resistance lowers evolutionary fitness in the absence of the stressor, Bt. In refuges, non-resistant strains outcompete resistant ones.

With sufficiently high levels of transgene expression, nearly all of the heterozygotes (S/s), i.e., the largest segment of the pest population carrying a resistance allele, will be killed before maturation, thus preventing transmission of the resistance gene to their progeny. Refuges (i. e., fields of nontransgenic plants) adjacent to transgenic fields increases the likelihood that homozygous resistant (s/s) individuals and any surviving heterozygotes will mate with susceptible (S/S) individuals from the refuge, instead of with other individuals carrying the resistance allele. As a result, the resistance gene frequency in the population remains lower. 

Complicating factors can affect the success of the high-dose/refuge strategy. For example, if the temperature is not ideal, thermal stress can lower Bt toxin production and leave the plant more susceptible. More importantly, reduced late-season expression has been documented, possibly resulting from DNA methylation of the promoter. The success of the high-dose/refuge strategy has successfully maintained the value of Bt crops. This success has depended on factors independent of management strategy, including low initial resistance allele frequencies, fitness costs associated with resistance, and the abundance of non-Bt host plants outside the refuges.

Companies that produce Bt seed are introducing strains with multiple Bt proteins. Monsanto did this with Bt cotton in India, where the product was rapidly adopted. Monsanto has also; in an attempt to simplify the process of implementing refuges in fields to comply with Insect Resistance Management(IRM) policies and prevent irresponsible planting practices; begun marketing seed bags with a set proportion of refuge (non-transgenic) seeds mixed in with the Bt seeds being sold. Coined "Refuge-In-a-Bag" (RIB), this practice is intended to increase farmer compliance with refuge requirements and reduce additional labor needed at planting from having separate Bt and refuge seed bags on hand. This strategy is likely to reduce the likelihood of Bt-resistance occurring for corn rootworm, but may increase the risk of resistance for lepidopteran corn pests, such as European corn borer. Increased concerns for resistance with seed mixtures include partially resistant larvae on a Bt plant being able to move to a susceptible plant to survive or cross pollination of refuge pollen on to Bt plants that can lower the amount of Bt expressed in kernels for ear feeding insects.

Herbicide resistance

Best management practices (BMPs) to control weeds may help delay resistance. BMPs include applying multiple herbicides with different modes of action, rotating crops, planting weed-free seed, scouting fields routinely, cleaning equipment to reduce the transmission of weeds to other fields, and maintaining field borders. The most widely planted GM crops are designed to tolerate herbicides. By 2006 some weed populations had evolved to tolerate some of the same herbicides. Palmer amaranth is a weed that competes with cotton. A native of the southwestern US, it traveled east and was first found resistant to glyphosate in 2006, less than 10 years after GM cotton was introduced.

Plant protection

Farmers generally use less insecticide when they plant Bt-resistant crops. Insecticide use on corn farms declined from 0.21 pound per planted acre in 1995 to 0.02 pound in 2010. This is consistent with the decline in European corn borer populations as a direct result of Bt corn and cotton. The establishment of minimum refuge requirements helped delay the evolution of Bt resistance. However, resistance appears to be developing to some Bt traits in some areas.

Tillage

By leaving at least 30% of crop residue on the soil surface from harvest through planting, conservation tillage reduces soil erosion from wind and water, increases water retention, and reduces soil degradation as well as water and chemical runoff. In addition, conservation tillage reduces the carbon footprint of agriculture. A 2014 review covering 12 states from 1996 to 2006, found that a 1% increase in herbicde-tolerant (HT) soybean adoption leads to a 0.21% increase in conservation tillage and a 0.3% decrease in quality-adjusted herbicide use.

Regulation

The regulation of genetic engineering concerns the approaches taken by governments to assess and manage the risks associated with the development and release of genetically modified crops. There are differences in the regulation of GM crops between countries, with some of the most marked differences occurring between the US and Europe. Regulation varies in a given country depending on the intended use of each product. For example, a crop not intended for food use is generally not reviewed by authorities responsible for food safety.

Production

In 2013, GM crops were planted in 27 countries; 19 were developing countries and 8 were developed countries. 2013 was the second year in which developing countries grew a majority (54%) of the total GM harvest. 18 million farmers grew GM crops; around 90% were small-holding farmers in developing countries.

Country 2013– GM planted area (million hectares) Biotech crops
US 70.1 Maize, Soybean, Cotton, Canola, Sugarbeet, Alfalfa, Papaya, Squash
Brazil 40.3 Soybean, Maize, Cotton
Argentina 24.4 Soybean, Maize, Cotton
India 11.0 Cotton
Canada 10.8 Canola, Maize, Soybean, Sugarbeet
Total 175.2 ----

The United States Department of Agriculture (USDA) reports every year on the total area of GM crop varieties planted in the United States. According to National Agricultural Statistics Service, the states published in these tables represent 81–86 percent of all corn planted area, 88–90 percent of all soybean planted area, and 81–93 percent of all upland cotton planted area (depending on the year).

Global estimates are produced by the International Service for the Acquisition of Agri-biotech Applications (ISAAA) and can be found in their annual reports, "Global Status of Commercialized Transgenic Crops".

Farmers have widely adopted GM technology (see figure). Between 1996 and 2013, the total surface area of land cultivated with GM crops increased by a factor of 100, from 17,000 square kilometers (4,200,000 acres) to 1,750,000 km2 (432 million acres). 10% of the world's arable land was planted with GM crops in 2010. As of 2011, 11 different transgenic crops were grown commercially on 395 million acres (160 million hectares) in 29 countries such as the US, Brazil, Argentina, India, Canada, China, Paraguay, Pakistan, South Africa, Uruguay, Bolivia, Australia, Philippines, Myanmar, Burkina Faso, Mexico and Spain. One of the key reasons for this widespread adoption is the perceived economic benefit the technology brings to farmers. For example, the system of planting glyphosate-resistant seed and then applying glyphosate once plants emerged provided farmers with the opportunity to dramatically increase the yield from a given plot of land, since this allowed them to plant rows closer together. Without it, farmers had to plant rows far enough apart to control post-emergent weeds with mechanical tillage. Likewise, using Bt seeds means that farmers do not have to purchase insecticides, and then invest time, fuel, and equipment in applying them. However critics have disputed whether yields are higher and whether chemical use is less, with GM crops.

Land area used for genetically modified crops by country (1996–2009), in millions of hectares. In 2011, the land area used was 160 million hectares, or 1.6 million square kilometers.
 
In the US, by 2014, 94% of the planted area of soybeans, 96% of cotton and 93% of corn were genetically modified varieties. Genetically modified soybeans carried herbicide-tolerant traits only, but maize and cotton carried both herbicide tolerance and insect protection traits (the latter largely Bt protein). These constitute "input-traits" that are aimed to financially benefit the producers, but may have indirect environmental benefits and cost benefits to consumers. The Grocery Manufacturers of America estimated in 2003 that 70–75% of all processed foods in the U.S. contained a GM ingredient.

Europe grows relatively few genetically engineered crops with the exception of Spain, where one fifth of maize is genetically engineered, and smaller amounts in five other countries. The EU had a 'de facto' ban on the approval of new GM crops, from 1999 until 2004. GM crops are now regulated by the EU. In 2015, genetically engineered crops are banned in 38 countries worldwide, 19 of them in Europe. Developing countries grew 54 percent of genetically engineered crops in 2013.

In recent years GM crops expanded rapidly in developing countries. In 2013 approximately 18 million farmers grew 54% of worldwide GM crops in developing countries. 2013's largest increase was in Brazil (403,000 km2 versus 368,000 km2 in 2012). GM cotton began growing in India in 2002, reaching 110,000 km2 in 2013.

According to the 2013 ISAAA brief: "...a total of 36 countries (35 + EU-28) have granted regulatory approvals for biotech crops for food and/or feed use and for environmental release or planting since 1994... a total of 2,833 regulatory approvals involving 27 GM crops and 336 GM events (NB: an "event" is a specific genetic modification in a specific species) have been issued by authorities, of which 1,321 are for food use (direct use or processing), 918 for feed use (direct use or processing) and 599 for environmental release or planting. Japan has the largest number (198), followed by the U.S.A. (165, not including "stacked" events), Canada (146), Mexico (131), South Korea (103), Australia (93), New Zealand (83), European Union (71 including approvals that have expired or under renewal process), Philippines (68), Taiwan (65), Colombia (59), China (55) and South Africa (52). Maize has the largest number (130 events in 27 countries), followed by cotton (49 events in 22 countries), potato (31 events in 10 countries), canola (30 events in 12 countries) and soybean (27 events in 26 countries).

Controversy

Direct genetic engineering has been controversial since its introduction. Most, but not all of the controversies are over GM foods rather than crops per se. GM foods are the subject of protests, vandalism, referenda, legislation, court action and scientific disputes. The controversies involve consumers, biotechnology companies, governmental regulators, non-governmental organizations and scientists. 

Opponents have objected to GM crops on multiple grounds including environmental impacts, food safety, whether GM crops are needed to address food needs, whether they are sufficiently accessible to farmers in developing countries and concerns over subjecting crops to intellectual property law. Secondary issues include labeling, the behavior of government regulators, the effects of pesticide use and pesticide tolerance. 

A significant environmental concern about using genetically modified crops is possible cross-breeding with related crops, giving them advantages over naturally occurring varieties. One example is a glyphosate-resistant rice crop that crossbreeds with a weedy relative, giving the weed a competitive advantage. The transgenic hybrid had higher rates of photosynthesis, more shoots and flowers, and more seeds than the non-transgenic hybrids. This demonstrates the possibility of ecosystem damage by GM crop usage. 

There is a scientific consensus that currently available food derived from GM crops poses no greater risk to human health than conventional food, but that each GM food needs to be tested on a case-by-case basis before introduction. Nonetheless, members of the public are much less likely than scientists to perceive GM foods as safe. The legal and regulatory status of GM foods varies by country, with some nations banning or restricting them, and others permitting them with widely differing degrees of regulation.

No reports of ill effects from GM food have been documented in the human population. GM crop labeling is required in many countries, although the United States Food and Drug Administration does not, nor does it distinguish between approved GM and non-GM foods. The United States enacted a law that requires labeling regulations to be issued by July 2018. It allows indirect disclosure such as with a phone number, bar code, or web site.

Advocacy groups such as Center for Food Safety, Union of Concerned Scientists, Greenpeace and the World Wildlife Fund claim that risks related to GM food have not been adequately examined and managed, that GM crops are not sufficiently tested and should be labelled, and that regulatory authorities and scientific bodies are too closely tied to industry. Some studies have claimed that genetically modified crops can cause harm; a 2016 review that reanalyzed the data from six of these studies found that their statistical methodologies were flawed and did not demonstrate harm, and said that conclusions about GM crop safety should be drawn from "the totality of the evidence... instead of far-fetched evidence from single studies".

Plant nutrition

From Wikipedia, the free encyclopedia

Farmer spreading decomposing manure to improve soil fertility and plant nutrition

Plant nutrition is the study of the chemical elements and compounds necessary for plant growth, plant metabolism and their external supply. In 1972, Emanuel Epstein defined two criteria for an element to be essential for plant growth:
  1. in its absence the plant is unable to complete a normal life cycle.
  2. or that the element is part of some essential plant constituent or metabolite.
This is in accordance with Justus von Liebig's law of the minimum. The essential plant nutrients include carbon, oxygen and hydrogen which are absorbed from the air, whereas other nutrients including nitrogen are typically obtained from the soil (exceptions include some parasitic or carnivorous plants).

There are seventeen most important nutrients for plants. Plants must obtain the following mineral nutrients from their growing medium:
These elements stay beneath soil as salts, so plants consume these elements as ions. The macronutrients are consumed in larger quantities; hydrogen, oxygen, nitrogen and carbon contribute to over 95% of a plants' entire biomass on a dry matter weight basis. Micronutrients are present in plant tissue in quantities measured in parts per million, ranging from 0.1 to 200 ppm, or less than 0.02% dry weight.

Most soil conditions across the world can provide plants adapted to that climate and soil with sufficient nutrition for a complete life cycle, without the addition of nutrients as fertilizer. However, if the soil is cropped it is necessary to artificially modify soil fertility through the addition of fertilizer to promote vigorous growth and increase or sustain yield. This is done because, even with adequate water and light, nutrient deficiency can limit growth and crop yield.

Processes

Plants take up essential elements from the soil through their roots and from the air (mainly consisting of nitrogen and oxygen) through their leaves. Nutrient uptake in the soil is achieved by cation exchange, wherein root hairs pump hydrogen ions (H+) into the soil through proton pumps. These hydrogen ions displace cations attached to negatively charged soil particles so that the cations are available for uptake by the root. In the leaves, stomata open to take in carbon dioxide and expel oxygen. The carbon dioxide molecules are used as the carbon source in photosynthesis

The root, especially the root hair, is the essential organ for the uptake of nutrients. The structure and architecture of the root can alter the rate of nutrient uptake. Nutrient ions are transported to the center of the root, the stele, in order for the nutrients to reach the conducting tissues, xylem and phloem. The Casparian strip, a cell wall outside the stele but within the root, prevents passive flow of water and nutrients, helping to regulate the uptake of nutrients and water. Xylem moves water and mineral ions within the plant and phloem accounts for organic molecule transportation. Water potential plays a key role in a plant's nutrient uptake. If the water potential is more negative within the plant than the surrounding soils, the nutrients will move from the region of higher solute concentration—in the soil—to the area of lower solute concentration - in the plant. 

There are three fundamental ways plants uptake nutrients through the root:
  1. Simple diffusion occurs when a nonpolar molecule, such as O2, CO2, and NH3 follows a concentration gradient, moving passively through the cell lipid bilayer membrane without the use of transport proteins.
  2. Facilitated diffusion is the rapid movement of solutes or ions following a concentration gradient, facilitated by transport proteins.
  3. Active transport is the uptake by cells of ions or molecules against a concentration gradient; this requires an energy source, usually ATP, to power molecular pumps that move the ions or molecules through the membrane.
Nutrients can be moved within plants to where they are most needed. For example, a plant will try to supply more nutrients to its younger leaves than to its older ones. When nutrients are mobile within the plant, symptoms of any deficiency become apparent first on the older leaves. However, not all nutrients are equally mobile. Nitrogen, phosphorus, and potassium are mobile nutrients while the others have varying degrees of mobility. When a less-mobile nutrient is deficient, the younger leaves suffer because the nutrient does not move up to them but stays in the older leaves. This phenomenon is helpful in determining which nutrients a plant may be lacking. 

Many plants engage in symbiosis with microorganisms. Two important types of these relationship are
  1. with bacteria such as rhizobia, that carry out biological nitrogen fixation, in which atmospheric nitrogen (N2) is converted into ammonium (NH+
    4
    ); and
  2. with mycorrhizal fungi, which through their association with the plant roots help to create a larger effective root surface area. Both of these mutualistic relationships enhance nutrient uptake.
Though nitrogen is plentiful in the Earth's atmosphere, relatively few plants harbour nitrogen-fixing bacteria, so most plants rely on nitrogen compounds present in the soil to support their growth. These can be supplied by mineralization of soil organic matter or added plant residues, nitrogen fixing bacteria, animal waste, through the breaking of triple bonded N2 molecules by lightning strikes or through the application of fertilizers.

Functions of nutrients

At least 17 elements are known to be essential nutrients for plants. In relatively large amounts, the soil supplies nitrogen, phosphorus, potassium, calcium, magnesium, and sulfur; these are often called the macronutrients. In relatively small amounts, the soil supplies iron, manganese, boron, molybdenum, copper, zinc, chlorine, and cobalt, the so-called micronutrients. Nutrients must be available not only in sufficient amounts but also in appropriate ratios. 

Plant nutrition is a difficult subject to understand completely, partially because of the variation between different plants and even between different species or individuals of a given clone. Elements present at low levels may cause deficiency symptoms, and toxicity is possible at levels that are too high. Furthermore, deficiency of one element may present as symptoms of toxicity from another element, and vice versa. An abundance of one nutrient may cause a deficiency of another nutrient. For example, K+ uptake can be influenced by the amount of NH+
4
available.

Although nitrogen is plentiful in the Earth's atmosphere, relatively few plants engage in nitrogen fixation (conversion of atmospheric nitrogen to a biologically useful form). Most plants, therefore, require nitrogen compounds to be present in the soil in which they grow. 

Carbon and oxygen are absorbed from the air while other nutrients are absorbed from the soil. Green plants obtain their carbohydrate supply from the carbon dioxide in the air by the process of photosynthesis. Each of these nutrients is used in a different place for a different essential function.

Macronutrients (derived from air and water)

Carbon

Carbon forms the backbone of most plant biomolecules, including proteins, starches and cellulose. Carbon is fixed through photosynthesis; this converts carbon dioxide from the air into carbohydrates which are used to store and transport energy within the plant.

Hydrogen

Hydrogen also is necessary for building sugars and building the plant. It is obtained almost entirely from water. Hydrogen ions are imperative for a proton gradient to help drive the electron transport chain in photosynthesis and for respiration.

Oxygen

Oxygen is a component of many organic and inorganic molecules within the plant, and is acquired in many forms. These include: O2 and CO2 (mainly from the air via leaves) and H2O, NO
3
, H2PO
4
and SO2−
4
(mainly from the soil water via roots). Plants produce oxygen gas (O2) along with glucose during photosynthesis but then require O2 to undergo aerobic cellular respiration and break down this glucose to produce ATP.

Macronutrients (primary)

Nitrogen

Nitrogen is a major constituent of several of the most important plant substances. For example, nitrogen compounds comprise 40% to 50% of the dry matter of protoplasm, and it is a constituent of amino acids, the building blocks of proteins. It is also an essential constituent of chlorophyll. Nitrogen deficiency most often results in stunted growth, slow growth, and chlorosis. Nitrogen deficient plants will also exhibit a purple appearance on the stems, petioles and underside of leaves from an accumulation of anthocyanin pigments. Most of the nitrogen taken up by plants is from the soil in the forms of NO
3
, although in acid environments such as boreal forests where nitrification is less likely to occur, ammonium NH+
4
is more likely to be the dominating source of nitrogen. Amino acids and proteins can only be built from NH+
4
, so NO
3
must be reduced. In many agricultural settings, nitrogen is the limiting nutrient for rapid growth. Nitrogen is transported via the xylem from the roots to the leaf canopy as nitrate ions, or in an organic form, such as amino acids or amides. Nitrogen can also be transported in the phloem sap as amides, amino acids and ureides; it is therefore mobile within the plant, and the older leaves exhibit chlorosis and necrosis earlier than the younger leaves.

There is an abundant supply of nitrogen in the earth’s atmosphere — N2 gas comprises nearly 79% of air. However, N2 is unavailable for use by most organisms because there is a triple bond between the two nitrogen atoms in the molecule, making it almost inert. In order for nitrogen to be used for growth it must be “fixed” (combined) in the form of ammonium (NH+
4
) or nitrate (NO
3
) ions. The weathering of rocks releases these ions so slowly that it has a negligible effect on the availability of fixed nitrogen. Therefore, nitrogen is often the limiting factor for growth and biomass production in all environments where there is a suitable climate and availability of water to support life. 

Nitrogen enters the plant largely through the roots. A “pool” of soluble nitrogen accumulates. Its composition within a species varies widely depending on several factors, including day length, time of day, night temperatures, nutrient deficiencies, and nutrient imbalance. Short day length promotes asparagine formation, whereas glutamine is produced under long day regimes. Darkness favors protein breakdown accompanied by high asparagine accumulation. Night temperature modifies the effects due to night length, and soluble nitrogen tends to accumulate owing to retarded synthesis and breakdown of proteins. Low night temperature conserves glutamine; high night temperature increases accumulation of asparagine because of breakdown. Deficiency of K accentuates differences between long- and short-day plants. The pool of soluble nitrogen is much smaller than in well-nourished plants when N and P are deficient since uptake of nitrate and further reduction and conversion of N to organic forms is restricted more than is protein synthesis. Deficiencies of Ca, K, and S affect the conversion of organic N to protein more than uptake and reduction. The size of the pool of soluble N is no guide per se to growth rate, but the size of the pool in relation to total N might be a useful ratio in this regard. Nitrogen availability in the rooting medium also affects the size and structure of tracheids formed in the long lateral roots of white spruce (Krasowski and Owens 1999).

Microorganisms have a central role in almost all aspects of nitrogen availability, and therefore for life support on earth. Some bacteria can convert N2 into ammonia by the process termed nitrogen fixation; these bacteria are either free-living or form symbiotic associations with plants or other organisms (e.g., termites, protozoa), while other bacteria bring about transformations of ammonia to nitrate, and of nitrate to N2 or other nitrogen gases. Many bacteria and fungi degrade organic matter, releasing fixed nitrogen for reuse by other organisms. All these processes contribute to the nitrogen cycle.

Phosphorus

Like nitrogen, phosphorus is involved with many vital plant processes. Within a plant, it is present mainly as a structural component of the nucleic acids: deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), as well as a constituent of fatty phospholipids, that are important in membrane development and function. It is present in both organic and inorganic forms, both of which are readily translocated within the plant. All energy transfers in the cell are critically dependent on phosphorus. As with all living things, phosphorus is part of the Adenosine triphosphate (ATP), which is of immediate use in all processes that require energy with the cells. Phosphorus can also be used to modify the activity of various enzymes by phosphorylation, and is used for cell signaling. Phosphorus is concentrated at the most actively growing points of a plant and stored within seeds in anticipation of their germination. Phosphorus is most commonly found in the soil in the form of polyprotic phosphoric acid (H3PO4), but is taken up most readily in the form of H2PO
4
. Phosphorus is available to plants in limited quantities in most soils because it is released very slowly from insoluble phosphates and is rapidly fixed once again. Under most environmental conditions it is the element that limits growth because of this constriction and due to its high demand by plants and microorganisms. Plants can increase phosphorus uptake by a mutualism with mycorrhiza. A Phosphorus deficiency in plants is characterized by an intense green coloration or reddening in leaves due to lack of chlorophyll. If the plant is experiencing high phosphorus deficiencies the leaves may become denatured and show signs of death. Occasionally the leaves may appear purple from an accumulation of anthocyanin. Because phosphorus is a mobile nutrient, older leaves will show the first signs of deficiency. 

On some soils, the phosphorus nutrition of some conifers, including the spruces, depends on the ability of mycorrhizae to take up, and make soil phosphorus available to the tree, hitherto unobtainable to the non-mycorrhizal root. Seedling white spruce, greenhouse-grown in sand testing negative for phosphorus, were very small and purple for many months until spontaneous mycorrhizal inoculation, the effect of which was manifested by a greening of foliage and the development of vigorous shoot growth. 

Phosphorus deficiency can produce symptoms similar to those of nitrogen deficiency, but as noted by Russel: “Phosphate deficiency differs from nitrogen deficiency in being extremely difficult to diagnose, and crops can be suffering from extreme starvation without there being any obvious signs that lack of phosphate is the cause”. Russell’s observation applies to at least some coniferous seedlings, but Benzian found that although response to phosphorus in very acid forest tree nurseries in England was consistently high, no species (including Sitka spruce) showed any visible symptom of deficiency other than a slight lack of lustre. Phosphorus levels have to be exceedingly low before visible symptoms appear in such seedlings. In sand culture at 0 ppm phosphorus, white spruce seedlings were very small and tinted deep purple; at 0.62 ppm, only the smallest seedlings were deep purple; at 6.2 ppm, the seedlings were of good size and color.

It is useful to apply a high phosphorus content fertilizer, such as bone meal, to perennials to help with successful root formation.

Potassium

Unlike other major elements, potassium does not enter into the composition of any of the important plant constituents involved in metabolism, but it does occur in all parts of plants in substantial amounts. It seems to be of particular importance in leaves and at growing points. Potassium is outstanding among the nutrient elements for its mobility and solubility within plant tissues. Processes involving potassium include the formation of carbohydrates and proteins, the regulation of internal plant moisture, as a catalyst and condensing agent of complex substances, as an accelerator of enzyme action, and as contributor to photosynthesis, especially under low light intensity. 

Potassium regulates the opening and closing of the stomata by a potassium ion pump. Since stomata are important in water regulation, potassium regulates water loss from the leaves and increases drought tolerance. Potassium deficiency may cause necrosis or interveinal chlorosis. The potassium ion (K+) is highly mobile and can aid in balancing the anion (negative) charges within the plant. Potassium helps in fruit coloration, shape and also increases its brix. Hence, quality fruits are produced in potassium-rich soils. Potassium serves as an activator of enzymes used in photosynthesis and respiration. Potassium is used to build cellulose and aids in photosynthesis by the formation of a chlorophyll precursor. Potassium deficiency may result in higher risk of pathogens, wilting, chlorosis, brown spotting, and higher chances of damage from frost and heat. 

When soil-potassium levels are high, plants take up more potassium than needed for healthy growth. The term luxury consumption has been applied to this. When potassium is moderately deficient, the effects first appear in the older tissues, and from there progress towards the growing points. Acute deficiency severely affects growing points, and die-back commonly occurs. Symptoms of potassium deficiency in white spruce include: browning and death of needles (chlorosis); reduced growth in height and diameter; impaired retention of needles; and reduced needle length. A relationship between potassium nutrition and cold resistance has been found in several tree species, including two species of spruce.

Macronutrients (secondary and tertiary)

Sulfur

Sulfur is a structural component of some amino acids (including cystein and methionine) and vitamins, and is essential for chloroplast growth and function; it is found in the iron-sulfur complexes of the electron transport chains in photosynthesis. It is needed for N2 fixation by legumes, and the conversion of nitrate into amino acids and then into protein.

In plants, sulfur cannot be mobilized from older leaves for new growth, so deficiency symptoms are seen in the youngest tissues first. Symptoms of deficiency include yellowing of leaves and stunted growth.

Calcium

Calcium regulates transport of other nutrients into the plant and is also involved in the activation of certain plant enzymes. Calcium deficiency results in stunting. This nutrient is involved in photosynthesis and plant structure. Blossom end rot is also a result of inadequate calcium.

Another common symptom of calcium deficiency in leaves is the curling of the leaf towards the veins or center of the leaf. Many times this can also have a blackened appearance Calcium has been found to have a positive effect in combating salinity in soils. It has been shown to ameliorate the negative effects that salinity has such as reduced water usage of plants. Calcium in plants occurs chiefly in the leaves, with lower concentrations in seeds, fruits, and roots. A major function is as a constituent of cell walls. When coupled with certain acidic compounds of the jelly-like pectins of the middle lamella, calcium forms an insoluble salt. It is also intimately involved in meristems, and is particularly important in root development, with roles in cell division, cell elongation, and the detoxification of hydrogen ions. Other functions attributed to calcium are; the neutralization of organic acids; inhibition of some potassium-activated ions; and a role in nitrogen absorption. A notable feature of calcium-deficient plants is a defective root system. Roots are usually affected before above-ground parts.

Magnesium

The outstanding role of magnesium in plant nutrition is as a constituent of the chlorophyll molecule. As a carrier, it is also involved in numerous enzyme reactions as an effective activator, in which it is closely associated with energy-supplying phosphorus compounds. Magnesium is very mobile in plants, and, like potassium, when deficient is translocated from older to younger tissues, so that signs of deficiency appear first on the oldest tissues and then spread progressively to younger tissues.

Micro-nutrients

Plants are able sufficiently to accumulate most trace elements. Some plants are sensitive indicators of the chemical environment in which they grow (Dunn 1991), and some plants have barrier mechanisms that exclude or limit the uptake of a particular element or ion species, e.g., alder twigs commonly accumulate molybdenum but not arsenic, whereas the reverse is true of spruce bark (Dunn 1991). Otherwise, a plant can integrate the geochemical signature of the soil mass permeated by its root system together with the contained groundwaters. Sampling is facilitated by the tendency of many elements to accumulate in tissues at the plant’s extremities.

Iron

Iron is necessary for photosynthesis and is present as an enzyme cofactor in plants. Iron deficiency can result in interveinal chlorosis and necrosis. Iron is not a structural part of chlorophyll but very much essential for its synthesis. Copper deficiency can be responsible for promoting an iron deficiency. It helps in the electron transport of plant.

Molybdenum

Molybdenum is a cofactor to enzymes important in building amino acids and is involved in nitrogen metabolism. Molybdenum is part of the nitrate reductase enzyme (needed for the reduction of nitrate) and the nitrogenase enzyme (required for biological nitrogen fixation). Reduced productivity as a result of molybdenum deficiency is usually associated with the reduced activity of one or more of these enzymes.

Boron

Boron is absorbed by plants in the form of the anion BO3−
3
. It is available to plants in moderately soluble mineral forms of Ca, Mg and Na borates and the highly soluble form of organic compounds. It is available to plants over a range of pH, from 5.0 to 7.5. It is mobile in the soil, hence, it is prone to leaching. Leaching removes substantial amounts of boron in sandy soil, but little in fine silt or clay soil. Boron's fixation to those minerals at high pH can render boron unavailable, while low pH frees the fixed boron, leaving it prone to leaching in wet climates. It precipitates with other minerals in the form of borax in which form it was first used over 400 years ago as a soil supplement. Decomposition of organic material causes boron to be deposited in the topmost soil layer. When soil dries it can cause a precipitous drop in the availability of boron to plants as the plants cannot draw nutrients from that desiccated layer. Hence, boron deficiency diseases appear in dry weather. 

Boron has many functions within a plant: it affects flowering and fruiting, pollen germination, cell division, and active salt absorption. The metabolism of amino acids and proteins, carbohydrates, calcium, and water are strongly affected by boron. Many of those listed functions may be embodied by its function in moving the highly polar sugars through cell membranes by reducing their polarity and hence the energy needed to pass the sugar. If sugar cannot pass to the fastest growing parts rapidly enough, those parts die. 

Boron is not relocatable in the plant via the phloem. It must be supplied to the growing parts via the xylem. Foliar sprays affect only those parts sprayed, which may be insufficient for the fastest growing parts, and is very temporary. 

Boron is essential for the proper forming and strengthening of cell walls. Lack of boron results in short thick cells producing stunted fruiting bodies and roots. Calcium to boron ratio must be maintained in a narrow range for normal plant growth. For alfalfa, that calcium to boron ratio must be from 80:1 to 600:1. Boron deficiency appears at 800:1 and higher. Boron levels within plants differ with plant species and range from 2.3 mg/kg for barley to 94.7 mg/kg for poppy. Lack of boron causes failure of calcium metabolism which produces hollow heart in beets and peanuts. 

Inadequate amounts of boron affect many agricultural crops, legume forage crops most strongly. Of the micronutrients, boron deficiencies are second most common after zinc. Deficiency results in the death of the terminal growing points and stunted growth. 

Boron supplements derive from dry lake bed deposits such as those in Death Valley, USA, in the form of sodium tetraborate (borax), from which less soluble calcium borate is made. Foliar sprays are used on fruit crop trees in soils of high alkalinity. Boron is often applied to fields as a contaminant in other soil amendments but is not generally adequate to make up the rate of loss by cropping. The rates of application of borate to produce an adequate alfalfa crop range from 15 pounds per acre for a sandy-silt, acidic soil of low organic matter, to 60 pounds per acre for a soil with high organic matter, high cation exchange capacity and high pH.

Boron concentration in soil water solution higher than one ppm is toxic to most plants. Toxic concentrations within plants are 10 to 50 ppm for small grains and 200 ppm in boron-tolerant crops such as sugar beets, rutabaga, cucumbers, and conifers. Toxic soil conditions are generally limited to arid regions or can be caused by underground borax deposits in contact with water or volcanic gases dissolved in percolating water. Application rates should be limited to a few pounds per acre in a test plot to determine if boron is needed generally. Otherwise, testing for boron levels in plant material is required to determine remedies. Excess boron can be removed by irrigation and assisted by application of elemental sulfur to lower the pH and increase boron solubility. 

Boron deficiencies can be detected by analysis of plant material to apply a correction before the obvious symptoms appear, after which it is too late to prevent crop loss. Strawberries deficient in boron will produce lumpy fruit; apricots will not blossom or, if they do, will not fruit or will drop their fruit depending on the level of boron deficit. Broadcast of boron supplements is effective and long term; a foliar spray is immediate but must be repeated.

Copper

Copper is important for photosynthesis. Symptoms for copper deficiency include chlorosis.It is involved in many enzyme processes; necessary for proper photosynthesis; involved in the manufacture of lignin (cell walls) and involved in grain production. It is also hard to find in some soil conditions.

Manganese

Manganese is necessary for photosynthesis, including the building of chloroplasts. Manganese deficiency may result in coloration abnormalities, such as discolored spots on the foliage.

Sodium

Sodium is involved in the regeneration of phosphoenolpyruvate in CAM and C4 plants. Sodium can potentially replace potassium's regulation of stomatal opening and closing.

Essentiality of sodium:
  • Essential for C4 plants rather C3
  • Substitution of K by Na: Plants can be classified into four groups:
  1. Group A—a high proportion of K can be replaced by Na and stimulate the growth, which cannot be achieved by the application of K
  2. Group B—specific growth responses to Na are observed but they are much less distinct
  3. Group C—Only minor substitution is possible and Na has no effect
  4. Group D—No substitution occurs
  • Stimulate the growth—increase leaf area and stomata. Improves the water balance
  • Na functions in metabolism
  1. C4 metabolism
  2. Impair the conversion of pyruvate to phosphoenol-pyruvate
  3. Reduce the photosystem II activity and ultrastructural changes in mesophyll chloroplast
  • Replacing K functions
  1. Internal osmoticum
  2. Stomatal function
  3. Photosynthesis
  4. Counteraction in long distance transport
  5. Enzyme activation
  • Improves the crop quality e.g. improves the taste of carrots by increasing sucrose

Zinc

Zinc is required in a large number of enzymes and plays an essential role in DNA transcription. A typical symptom of zinc deficiency is the stunted growth of leaves, commonly known as "little leaf" and is caused by the oxidative degradation of the growth hormone auxin.

Nickel

In higher plants, nickel is absorbed by plants in the form of Ni2+ ion. Nickel is essential for activation of urease, an enzyme involved with nitrogen metabolism that is required to process urea. Without nickel, toxic levels of urea accumulate, leading to the formation of necrotic lesions. In lower plants, nickel activates several enzymes involved in a variety of processes, and can substitute for zinc and iron as a cofactor in some enzymes.

Chlorine

Chlorine, as compounded chloride, is necessary for osmosis and ionic balance; it also plays a role in photosynthesis.

Cobalt

Cobalt has proven to be beneficial to at least some plants although it does not appear to be essential for most species. It has, however, been shown to be essential for nitrogen fixation by the nitrogen-fixing bacteria associated with legumes and other plants.

Aluminium

Aluminum is one of the few elements capable of making soil more acidic. This is achieved by aluminum taking hydroxide ions out of water, leaving hydrogen ions behind. As a result, the soil is more acidic, which makes it unlivable for many plants. Another consequence of aluminum in soils is aluminum toxicity, which inhibits root growth.
  • Tea has a high tolerance for aluminum (Al) toxicity and the growth is stimulated by Al application. The possible reason is the prevention of Cu, Mn or P toxicity effects.
  • There have been reports that Al may serve as a fungicide against certain types of root rot.

Silicon

Silicon is not considered an essential element for plant growth and development. It is always found in abundance in the environment and hence if needed it is available. It is found in the structures of plants and improves the health of plants.

In plants, silicon has been shown in experiments to strengthen cell walls, improve plant strength, health, and productivity. There have been studies showing evidence of silicon improving drought and frost resistance, decreasing lodging potential and boosting the plant's natural pest and disease fighting systems. Silicon has also been shown to improve plant vigor and physiology by improving root mass and density, and increasing above ground plant biomass and crop yields. Silicon is currently under consideration by the Association of American Plant Food Control Officials (AAPFCO) for elevation to the status of a "plant beneficial substance".

Vanadium

Vanadium may be required by some plants, but at very low concentrations. It may also be substituting for molybdenum.

Selenium

Selenium is probably not essential for flowering plants, but it can be beneficial; it can stimulate plant growth, improve tolerance of oxidative stress, and increase resistance to pathogens and herbivory.

Selenium is, however, an essential mineral element for animal (including human) nutrition and selenium deficiencies are known to occur when food or animal feed is grown on selenium-deficient soils. The use of inorganic selenium fertilizers can increase selenium concentrations in edible crops and animal diets thereby improving animal health.

Nutrient deficiency

The effect of a nutrient deficiency can vary from a subtle depression of growth rate to obvious stunting, deformity, discoloration, distress, and even death. Visual symptoms distinctive enough to be useful in identifying a deficiency are rare. Most deficiencies are multiple and moderate. However, while a deficiency is seldom that of a single nutrient, nitrogen is commonly the nutrient in shortest supply.

Chlorosis of foliage is not always due to mineral nutrient deficiency. Solarization can produce superficially similar effects, though mineral deficiency tends to cause premature defoliation, whereas solarization does not, nor does solarization depress nitrogen concentration.

Nutrient status of plants

Nutrient status (mineral nutrient and trace element composition, also called ionome and nutrient profile) of plants are commonly portrayed by tissue elementary analysis. Interpretation of the results of such studies, however, has been controversial. During the last decades the nearly two-century-old “law of minimum” or “Liebig's law” (that states that plant growth is controlled not by the total amount of resources available, but by the scarcest resource) has been replaced by several mathematical approaches that use different models in order to take the interactions between the individual nutrients into account. The latest developments in this field are based on the fact that the nutrient elements (and compounds) do not act independently from each other; Baxter, 2015, because there may be direct chemical interactions between them or they may influence each other’s uptake, translocation, and biological action via a number of mechanisms as exemplified for the case of ammonia.

Plant nutrition in agricultural systems

Hydroponics

Hydroponics is a method for growing plants in a water-nutrient solution without the use of nutrient-rich soil. It allows researchers and home gardeners to grow their plants in a controlled environment. The most common solution is the Hoagland solution, developed by D. R. Hoagland in 1933. The solution consists of all the essential nutrients in the correct proportions necessary for most plant growth. An aerator is used to prevent an anoxic event or hypoxia. Hypoxia can affect nutrient uptake of a plant because, without oxygen present, respiration becomes inhibited within the root cells. The nutrient film technique is a hydroponic technique in which the roots are not fully submerged. This allows for adequate aeration of the roots, while a "film" thin layer of nutrient-rich water is pumped through the system to provide nutrients and water to the plant.

Operator (computer programming)

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