Efforts
to tease apart the vast swarm of proteins in venom — a field called
venomics — have burgeoned in recent years, leading to important drug
discoveries.
TUCSON,
Ariz. — In a small room in a building at the Arizona-Sonora Desert
Museum, the invertebrate keeper, Emma Califf, lifts up a rock in a
plastic box. “This is one of our desert hairies,” she said, exposing a
three-inch-long scorpion, its tail arced over its back. “The largest
scorpion in North America.”
This
captive hairy, along with a swarm of inch-long bark scorpions in another
box, and two dozen rattlesnakes of varying species and sub- species
across the hall, are kept here for the coin of the realm: their venom.
Efforts to tease apart the vast swarm of proteins in venom
— a field called venomics — have burgeoned in recent years, and the
growing catalog of compounds has led to a number of drug discoveries. As
the components of these natural toxins continue to be assayed by
evolving technologies, the number of promising molecules is also
growing.
“A century ago we thought
venom had three or four components, and now we know just one type of
venom can have thousands,” said Leslie V. Boyer, a professor emeritus of
pathology at the University of Arizona. “Things are accelerating
because a small number of very good laboratories have been pumping out
information that everyone else can now use to make discoveries.”
She added, “There’s a pharmacopoeia out there waiting to be explored.”
It
is a striking case of modern-day scientific alchemy: The most highly
evolved of natural poisons on the planet are creating a number of
effective medicines with the potential for many more.
One of the most promising venom-derived drugs to date comes from the deadly Fraser Island funnel web spider of Australia, which halts cell death after a heart attack.
Blood
flow to the heart is reduced after a heart attack, which makes the cell
environment more acidic and leads to cell death. The drug, a protein
called Hi1A, is scheduled for clinical trials next year. In the lab, it
was tested on the cells of beating human hearts. It was found to block
their ability to sense acid, “so the death message is blocked, cell
death is reduced, and we see improved heart cell survival,” said Nathan
Palpant, a researcher at the University of Queensland in Australia who
helped make the discovery.
If
proven in trials, it could be administered by emergency medical
workers, and might prevent the damage that occurs after heart attacks
and possibly improve outcomes in heart transplants by keeping the donor
heart healthier longer.
“It looks like
it’s going to be a heart attack wonder drug,” said Bryan Fry, an
associate professor of toxicology at the University of Queensland, who
is familiar with the research but was not involved in it. “And it’s from
one of the most vilified creatures” in Australia.
The
techniques used to process venom compounds have become so powerful that
they are creating new opportunities. “We can do assays nowadays using
only a couple of micrograms of venom that 10 or 15 years ago would have
required hundreds of micrograms,” or more, Dr. Fry said. “What this has
done is open up all the other venomous lineages out there that produce
tiny amounts of material.”
There is an
enormous natural library to sort through. Hundreds of thousands of
species of reptile, insect, spider, snail and jellyfish, among other
creatures, have mastered the art of chemical warfare with venom.
Moreover, the makeup of venom varies from animal to animal. There is a
kind of toxic terroir: Venom differs in quantity, potency and proportion
and types of toxin, according to habitat and diet, and even by changing
temperatures due to climate change.
Venom
is made of a complex mix of toxins, which are composed of proteins with
unique characteristics. They are so deadly because evolution has honed
their effectiveness for so long — some 54 million years for snakes and
600 million for jellyfish.
Venom
is the product of a biological arms race over that time; as venom
becomes more deadly, victims evolve more resistance, which in turn makes
venom even deadlier. Humans are included in that dynamic. “We are made
of protein and our protein has little complex configurations on it that
make us human,” said Dr. Boyer, who founded the Venom Immunochemistry,
Pharmacology, and Emergency Response Institute, or VIPER. “And those
little configurations are targets of the venom.”
The
specific cellular proteins that the venom molecules have evolved to
target with pinpoint accuracy are what make the drugs derived from them —
which use the same pathways — so effective. Some proteins, however,
have inherent problems that can make new drugs from them unworkable.
There is usually no need to gather venom to make these drugs. Once they are identified, they can be synthesized.
There
are three main effects from venom. Neurotoxins attack the nervous
system, paralyzing the victim. Hemotoxins target the blood and local
tissue toxins attack the area around the site of poison exposure.
Numerous
venom-derived drugs are on the market. Captopril, the first, was
created in the 1970s from the venom of a Brazilian jararaca pit viper to
treat high blood pressure. It has been successful commercially. Another
drug, exenatide, is derived from Gila monster venom and is prescribed
for Type 2 diabetes. Draculin is an anticoagulant from vampire bat venom
and is used to treat stroke and heart attack.
The
venom of the Israeli deathstalker scorpion is the source of a compound
in clinical trials that finds and illuminates breast and colon tumors.
Some
proteins have been flagged as potential candidates for new drugs, but
they have to journey through the long process of manufacture and
clinical trials, which can take many years and cost millions of dollars.
In March, researchers at the University of Utah announced that they had
discovered a fast-acting molecule in cone snails.
Cone snails fire their venom into fish, which causes the victims’
insulin levels to drop so rapidly it kills them. It holds promise as a
drug for diabetes. Bee venom appears to work with a wide range of
pathologies and has recently been found to kill aggressive breast cancer cells.
In
Brazil researchers have been looking at the venom of the Brazilian
wandering spider as a possible source of a new drug for erectile
dysfunction — because of what happens to human victims when they are
bit. “A characteristic of their envenomation is that males get
extraordinary painful, incredibly long-lasting erections,” Dr. Fry said.
“They have to separate it from its lethal factor, of course, and find a
way to dial it back.”
Some scientists
have long suspected that important secrets are locked up in venom.
Scientific interest first surfaced in the 17th century. In the mid-18th
century the Italian physician and polymath Felice Fontana added to the
body of knowledge with his treatise, and in 1860 the first research to
look at venom components was conducted by S. Weir Mitchell in
Philadelphia.
The medicinal use of
venom has a long history, often without scientific support. Venom-dipped
needles are a traditional form of acupuncture. Bee sting therapy, in
which a swarm of bees is placed on the skin, is used by some natural
healers. The rock musician Steve Ludwin claims to have routinely
injected himself with diluted venom, believing it to be a tonic that
builds his immune system and boosts his energy.
The
demand for venom is increasing. Ms. Califf of the Arizona-Sonora Desert
Museum said she had to travel to the desert to find more bark
scorpions, which she hunts at night with a black light because they glow
in the dark. Arizona, Dr. Boyer said, is “venom central,” with more
venomous creatures than in any other U.S. state, making it well suited
for this kind of production.
Scorpion
venom is harvested by applying a tiny electrical current to the
arachnid, which causes it to excrete a small drop of the amber liquid at
the tip of its tail. With snakes, venom glands are gently massaged as
they bare their fangs over a martini glass. After they surrender their
venom, the substance is sent to researchers around the globe.
Pit
vipers, including rattlesnakes, have other unusual adaptations. The
“pit” is the site of the biological equipment that allows snakes to
sense the heat of their prey. “You can blindfold a snake and it will
still strike the target,” Dr. Boyer said.
But
it’s not just venom that’s far better understood these days. In the
last few years, there has been a well-heeled and concerted search for
antivenom.
In 2019 the Wellcome Trust
created a $100 million fund toward the pursuit. Since then there have
been numerous research efforts around the world looking for a single
universal treatment — one that can be carried into remote areas to
immediately help someone bitten by any type of venomous snake.
Currently, different types of snakebites have different antivenom.
It
has been difficult. The wide array of ingredients in venom that benefit
new drug research has also made it difficult to find a drug that can
neutralize them. One promising universal antivenom, varespladib, is in
clinical trials.
Experts hope the role
of venom will lead to more respect for the fear-inducing creatures who
create them. Dr. Fry, for his work on anticoagulants, is studying the
venom of Komodo dragons, which, at 10 feet long and more than 300
pounds, is the largest lizard in the world. It is also highly
endangered.
Work on the Komodo, “allows us to talk about the broader conservation message,” he said.
“You
want nature around because it’s a biobank,” he added. “We can only find
these interesting compounds from these magnificent creatures if they
are not extinct.”
In thermodynamics, the chemical potential of a species is the energy that can be absorbed or released due to a change of the particle number of the given species, e.g. in a chemical reaction or phase transition. The chemical potential of a species in a mixture is defined as the rate of change of free energy of a thermodynamic system with respect to the change in the number of atoms or molecules of the species that are added to the system. Thus, it is the partial derivative
of the free energy with respect to the amount of the species, all other
species' concentrations in the mixture remaining constant. When both
temperature and pressure are held constant, and the number of particles
is expressed in moles, the chemical potential is the partial molarGibbs free energy. At chemical equilibrium or in phase equilibrium, the total sum of the product of chemical potentials and stoichiometric coefficients is zero, as the free energy is at a minimum.
In a system in diffusion equilibrium, the chemical potential of any
chemical species is uniformly the same everywhere throughout the system.
In semiconductor physics, the chemical potential of a system of electrons at zero absolute temperature is known as the Fermi energy.
Overview
Particles
tend to move from higher chemical potential to lower chemical potential
because this reduces the free energy. In this way, chemical potential
is a generalization of "potentials" in physics such as gravitational potential.
When a ball rolls down a hill, it is moving from a higher gravitational
potential (higher internal energy thus higher potential for work) to a
lower gravitational potential (lower internal energy). In the same way,
as molecules move, react, dissolve, etc., they will always tend
naturally to go from a higher chemical potential to a lower one,
changing the particle number, which is conjugate variable to chemical potential.
A simple example is a system of dilute molecules diffusing in a homogeneous environment. In this system, the molecules tend to move from areas with high concentration
to low concentration, until eventually, the concentration is the same
everywhere. The microscopic explanation for this is based on kinetic theory
and the random motion of molecules. However, it is simpler to describe
the process in terms of chemical potentials: For a given temperature, a
molecule has a higher chemical potential in a higher-concentration area
and a lower chemical potential in a low concentration area. Movement of
molecules from higher chemical potential to lower chemical potential is
accompanied by a release of free energy. Therefore, it is a spontaneous process.
Another example, not based on concentration but on phase, is an ice cube on a plate above 0 °C. An H2O
molecule that is in the solid phase (ice) has a higher chemical
potential than a water molecule that is in the liquid phase (water)
above 0 °C. When some of the ice melts, H2O molecules convert
from solid to the warmer liquid where their chemical potential is
lower, so the ice cube shrinks. At the temperature of the melting point, 0 °C, the chemical potentials in water and ice are the same; the ice cube neither grows nor shrinks, and the system is in equilibrium.
Vinegar
contains acetic acid. When acid molecules dissociate, the concentration
of the undissociated acid molecules (HA) decreases and the
concentrations of the product ions (H+ and A−) increase. Thus the chemical potential of HA decreases and the sum of the chemical potentials of H+ and A−
increases. When the sums of chemical potential of reactants and
products are equal the system is at equilibrium and there is no tendency
for the reaction to proceed in either the forward or backward
direction. This explains why vinegar is acidic, because acetic acid
dissociates to some extent, releasing hydrogen ions into the solution.
In electrochemistry, ions do not always tend to go from higher to lower chemical potential, but they do always go from higher to lower electrochemical potential.
The electrochemical potential completely characterizes all of the
influences on an ion's motion, while the chemical potential includes
everything except the electric force. (See below for more on this terminology.)
where dU is the infinitesimal change of internal energyU, dS the infinitesimal change of entropyS, and dV is the infinitesimal change of volumeV for a thermodynamic system in thermal equilibrium, and dNi is the infinitesimal change of particle number Ni of species i as particles are added or subtracted. T is absolute temperature, S is entropy, P is pressure, and V is volume. Other work terms, such as those involving electric, magnetic or gravitational fields may be added.
From the above equation, the chemical potential is given by
This is an inconvenient expression for condensed-matter systems, such
as chemical solutions, as it is hard to control the volume and entropy
to be constant while particles are added. A more convenient expression
may be obtained by making a Legendre transformation to another thermodynamic potential: the Gibbs free energy. From the differential and using the above expression for , a differential relation for is obtained:
As a consequence, another expression for results:
and the change in Gibbs free energy of a system that is held at constant temperature and pressure is simply
In thermodynamic equilibrium, when the system concerned is at
constant temperature and pressure but can exchange particles with its
external environment, the Gibbs free energy is at its minimum for the
system, that is . It follows that
Use of this equality provides the means to establish the equilibrium constant for a chemical reaction.
By making further Legendre transformations from U to other thermodynamic potentials like the enthalpy and Helmholtz free energy, expressions for the chemical potential may be obtained in terms of these:
These different forms for the chemical potential are all equivalent,
meaning that they have the same physical content and may be useful in
different physical situations.
Applications
The Gibbs–Duhem equation
is useful because it relates individual chemical potentials. For
example, in a binary mixture, at constant temperature and pressure, the
chemical potentials of the two participants A and B are related by
where is the number of moles of A and
is the number of moles of B. Every instance of phase or chemical
equilibrium is characterized by a constant. For instance, the melting of
ice is characterized by a temperature, known as the melting point
at which solid and liquid phases are in equilibrium with each other.
Chemical potentials can be used to explain the slopes of lines on a phase diagram by using the Clapeyron equation, which in turn can be derived from the Gibbs–Duhem equation. They are used to explain colligative properties such as melting-point depression by the application of pressure. Henry's law for the solute can be derived from Raoult's law for the solvent using chemical potentials.
History
Chemical potential was first described by the American engineer, chemist and mathematical physicist Josiah Willard Gibbs. He defined it as follows:
If to any homogeneous mass in a state of hydrostatic stress we suppose an infinitesimal quantity of any substance to be added, the mass remaining homogeneous and its entropy and volume remaining unchanged, the increase of the energy of the mass divided by the quantity of the substance added is the potential for that substance in the mass considered.
Gibbs later noted also that for the purposes of this definition, any chemical element
or combination of elements in given proportions may be considered a
substance, whether capable or not of existing by itself as a homogeneous
body. This freedom to choose the boundary of the system allows the
chemical potential to be applied to a huge range of systems. The term
can be used in thermodynamics and physics for any system undergoing change. Chemical potential is also referred to as partial molar Gibbs energy (see also partial molar property). Chemical potential is measured in units of energy/particle or, equivalently, energy/mole.
In his 1873 paper A Method of Geometrical Representation of the Thermodynamic Properties of Substances by Means of Surfaces,
Gibbs introduced the preliminary outline of the principles of his new
equation able to predict or estimate the tendencies of various natural
processes to ensue when bodies or systems are brought into contact. By
studying the interactions of homogeneous substances in contact, i.e.
bodies, being in composition part solid, part liquid, and part vapor,
and by using a three-dimensional volume–entropy–internal energy
graph, Gibbs was able to determine three states of equilibrium, i.e.
"necessarily stable", "neutral", and "unstable", and whether or not
changes will ensue. In 1876, Gibbs built on this framework by
introducing the concept of chemical potential so to take into account
chemical reactions and states of bodies that are chemically different
from each other. In his own words from the aforementioned paper, Gibbs
states:
If we wish to express in a single
equation the necessary and sufficient condition of thermodynamic
equilibrium for a substance when surrounded by a medium of constant
pressure P and temperature T, this equation may be written:
Where δ refers to the variation produced by any variations in the
state of the parts of the body, and (when different parts of the body
are in different states) in the proportion in which the body is divided
between the different states. The condition of stable equilibrium is
that the value of the expression in the parenthesis shall be a minimum.
In this description, as used by Gibbs, ε refers to the internal energy of the body, η refers to the entropy of the body, and ν is the volume of the body.
Electrochemical, internal, external, and total chemical potential
The
abstract definition of chemical potential given above—total change in
free energy per extra mole of substance—is more specifically called total chemical potential.
If two locations have different total chemical potentials for a
species, some of it may be due to potentials associated with "external"
force fields (electric potential energy, gravitational potential energy, etc.), while the rest would be due to "internal" factors (density, temperature, etc.) Therefore, the total chemical potential can be split into internal chemical potential and external chemical potential:
where
i.e., the external potential is the sum of electric potential, gravitational potential, etc. (where q and m are the charge and mass of the species, Vele and h are the electric potential and height of the container, respectively, and g is the acceleration due to gravity).
The internal chemical potential includes everything else besides the
external potentials, such as density, temperature, and enthalpy. This
formalism can be understood by assuming that the total energy of a
system, , is the sum of two parts: an internal energy, , and an external energy due to the interaction of each particle with an external field, . The definition of chemical potential applied to yields the above expression for .
The phrase "chemical potential" sometimes means "total chemical potential", but that is not universal. In some fields, in particular electrochemistry, semiconductor physics, and solid-state physics, the term "chemical potential" means internal chemical potential, while the term electrochemical potential is used to mean total chemical potential.
Electrons in solids have a chemical potential, defined the same way
as the chemical potential of a chemical species: The change in free
energy when electrons are added or removed from the system. In the case
of electrons, the chemical potential is usually expressed in energy per
particle rather than energy per mole, and the energy per particle is
conventionally given in units of electronvolt (eV).
Chemical potential plays an especially important role in solid-state physics and is closely related to the concepts of work function, Fermi energy, and Fermi level. For example, n-type silicon has a higher internal chemical potential of electrons than p-type silicon. In a p–n junction diode at equilibrium the chemical potential (internal chemical potential) varies from the p-type to the n-type side, while the total chemical potential (electrochemical potential, or, Fermi level) is constant throughout the diode.
As described above, when describing chemical potential, one has
to say "relative to what". In the case of electrons in semiconductors,
internal chemical potential is often specified relative to some
convenient point in the band structure, e.g., to the bottom of the
conduction band. It may also be specified "relative to vacuum", to yield
a quantity known as work function,
however, work function varies from surface to surface even on a
completely homogeneous material. Total chemical potential, on the other
hand, is usually specified relative to electrical ground.
In atomic physics, the chemical potential of the electrons in an atom is sometimes said to be the negative of the atom's electronegativity. Likewise, the process of chemical potential equalization is sometimes referred to as the process of electronegativity equalization. This connection comes from the Mulliken electronegativity scale. By inserting the energetic definitions of the ionization potential and electron affinity
into the Mulliken electronegativity, it is seen that the Mulliken
chemical potential is a finite difference approximation of the
electronic energy with respect to the number of electrons., i.e.,
In the case of photons, photons are bosons
and can very easily and rapidly appear or disappear. Therefore, at
thermodynamic equilibrium, the chemical potential of photons is always
and everywhere zero. The reason is, if the chemical potential somewhere
was higher than zero, photons would spontaneously disappear from that
area until the chemical potential went back to zero; likewise, if the
chemical potential somewhere was less than zero, photons would
spontaneously appear until the chemical potential went back to zero.
Since this process occurs extremely rapidly (at least, it occurs rapidly
in the presence of dense charged matter), it is safe to assume that the
photon chemical potential is never different from zero.
Electric charge is different because it is conserved, i.e. it can
be neither created nor destroyed. It can, however, diffuse. The
"chemical potential of electric charge" controls this diffusion:
Electric charge, like anything else, will tend to diffuse from areas of
higher chemical potential to areas of lower chemical potential. Other conserved quantities like baryon number
are the same. In fact, each conserved quantity is associated with a
chemical potential and a corresponding tendency to diffuse to equalize
it out.
In the case of electrons, the behaviour depends on temperature and context. At low temperatures, with no positrons
present, electrons cannot be created or destroyed. Therefore, there is
an electron chemical potential that might vary in space, causing
diffusion. At very high temperatures, however, electrons and positrons
can spontaneously appear out of the vacuum (pair production),
so the chemical potential of electrons by themselves becomes a less
useful quantity than the chemical potential of the conserved quantities
like (electrons minus positrons).
The chemical potential of component i in solution for (left) ideal [incorrectly linearized] and (right) real solutions
Generally the chemical potential is given as a sum of an ideal contribution and an excess contribution:
In an ideal solution, the chemical potential of species i (μi) is dependent on temperature and pressure. μi0(T, P) is defined as the chemical potential of pure species i. Given this definition, the chemical potential of species i in an ideal solution is
where R is the gas constant, and is the mole fraction of species i contained in the solution. The chemical potential becomes negative infinity when , but this does not lead to unphysical results because means that species i is not present in the system.
This equation assumes that only depends on the mole fraction () contained in the solution. This neglects intermolecular interaction between species i with itself and other species [i–(j≠i)]. This can be corrected for by factoring in the coefficient of activity of species i, defined as γi. This correction yields
The plots above give a very rough picture of the ideal and non-ideal situation.