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Sunday, August 3, 2014

Inter-Related Meanings of Organic

The word "organic" has a number of meanings, both in science, and among the general public.  These meanings are often inter-related.  Here, I will condense several Wiki articles to cover a few of them.
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Organic matter

Organic matter (or organic material, natural organic matter, NOM) is matter composed of organic compounds that has come from the remains of dead organisms such as plants and animals and their waste products in the environment.[1] Basic structures are created from cellulose, tannin, cutin, and lignin, along with other various proteins, lipids, and carbohydrates. It is very important in the movement of nutrients in the environment and plays a role in water retention on the surface of the planet.[citation needed]

Formation

Living organisms are composed of organic compounds. In life they secrete or excrete organic materials into their environment, shed body parts such as leaves and roots and after the organism dies, its body is broken down by bacterial and fungal action. Larger molecules of organic matter can be formed from the polymerization of different parts of already broken down matter.[citation needed] Natural organic matter can vary greatly, depending on its origin, transformation mode, age, and existing environment, thus its bio-physico-chemical functions vary with different environments."[2]

Natural ecosystem functions

Organic matter is present throughout the ecosystem. After degrading and reacting, it can then move into soil and mainstream water via waterflow. Organic matter provides nutrition to living organisms.. Organic matter acts as a buffer, when in aqueous solution, to maintain a less acidic pH in the environment. The buffer acting component has been proposed to be relevant for neutralizing acid rain.[3]

Source cycle

A majority of organic matter not already in the soil comes from groundwater. When the groundwater saturates the soil or sediment around it, organic matter can freely move between the phases. Groundwater has its own sources of natural organic matter also:
  • "organic matter deposits, such as kerogen and coal
  • soil and sediment organic matter
  • organic matter infiltrating into the subsurface from rivers, lakes, and marine systems"[4]
Note that one source of groundwater organic matter is soil organic matter and sedimentary organic matter. The major method of movement into soil is from groundwater, but organic matter from soil moves into groundwater as well. Most of the organic matter in lakes, rivers, and surface water areas comes from deteriorated material in the water and surrounding shores. However, organic matter can pass into or out of water to soil and sediment in the same respect as with the soil.

Importance of the cycle

Organic matter can migrate through soil, sediment, water. This movement enables a cycle. Organisms decompose into organic matter, which can then be transported and recycled. Not all biomass migrates, some is rather stationary, turning over only over the course of millions of years.[5]

Soil organic matter

The organic matter in soil derives from plants and animals. In a forest, for example, leaf litter and woody material falls to the forest floor. This is sometimes referred to as organic material.[6] When it decays to the point in which it is no longer recognizable it is called soil organic matter. When the organic matter has broken down into a stable substance that resist further decomposition it is called humus. Thus soil organic matter comprises all of the organic matter in the soil exclusive of the material that has not decayed.[7]

One of the advantages of humus is that it is able to withhold water and nutrients, therefore giving plants the capacity for growth. Another advantage of humus is that it helps the soil to stick together which allows nematodes, or microscopic bacteria, to easily decay the nutrients in the soil.[8]

There are several ways to quickly increase the amount of humus. Combining compost, plant or animal materials/waste, or green manure with soil will increase the amount of humus in the soil.
  1. Compost: decomposed organic material.
  2. Plant and animal material and waste: dead plants or plant waste such as leaves or bush and tree trimmings, or animal manure.
  3. Green manure: plants or plant material that is grown for the sole purpose of being incorporated with soil.
These three materials supply nematodes and bacteria with nutrients for them to thrive and produce more humus, which will give plants enough nutrients to survive and grow.[8]

Factors controlling rates of decomposition

    • Environmental factors
      • 1. Aeration
      • 2. Temperature
      • 3. Soil Moisture
      • 4. Soil pH
    • Quality of added residues
      • 1. Size of organic residues
      • 2. C/N of organic residues
  • Rate of decomposition of plant residues, in order from fastest to slowest decomposition rates:
    • 1. Sugars, starches, simple proteins
    • 2. Hemicellulose
    • 3. Cellulose
    • 4. Fats, waxes, oils, resins
    • 5. Lignin, phenolic compounds

Priming effect

The priming effect is characterized by intense changes in the natural process of soil organic matter (SOM) turnover, resulting from relatively moderate intervention with the soil.[9] The phenomenon is generally caused by either pulsed or continuous changes to inputs of fresh organic matter (FOM).[10] Priming effects usually result in an acceleration of mineralization due to a trigger such as the FOM inputs. The cause of this increase in decomposition has often been attributed to an increase in microbial activity resulting from higher energy and nutrient availability released from the FOM.
After the input of FOM, specialized microorganisms are believed to grow quickly and only decompose this newly added organic matter.[11] The turnover rate of SOM in these areas is at least one order of magnitude higher than the bulk soil.[10]

Other soil treatments, besides organic matter inputs, which lead to this short-term change in turnover rates, include "input of mineral fertilizer, exudation of organic substances by roots, mere mechanical treatment of soil or its drying and rewetting."[9]

Priming effects can be either positive or negative depending on the reaction of the soil with the added substance. A positive priming effect results in the acceleration of mineralization while a negative priming effect results in immobilization, leading to N unavailability. Although most changes have been documented in C and N pools, the priming effect can also be found in phosphorus and sulfur, as well as other nutrients.[9]

Löhnis was the first to discover the priming effect phenomenon in 1926 through his studies of green
manure decomposition and its effects on legume plants in soil. He noticed that when adding fresh organic residues to the soil, it resulted in intensified mineralization by the humus N. It was not until 1953, though, that the term priming effect was given by Bingemann in his paper titled, The effect of the addition of organic materials on the decomposition of an organic soil. Several other terms had been used before priming effect was coined, including priming action, added nitrogen interaction (ANI), extra N and additional N.[9] Despite these early contributions, the concept of the priming effect was widely disregarded until about the 1980s-1990s.[10]

The priming effect has been found in many different studies and is regarded as a common occurrence, appearing in most plant soil systems.[12] However, the mechanisms which lead to the priming effect are more complex then originally thought, and still remain generally misunderstood.[11]

Although there is a lot of uncertainty surrounding the reason for the priming effect, a few undisputed facts have emerged from the collection of recent research:
  1. The priming effect can arise either instantaneously or very shortly (potentially days or weeks)[10] after the addition of a substance is made to the soil.
  2. The priming effect is larger in soils that are rich in C and N as compared to those poor in these nutrients.
  3. Real priming effects have not been observed in sterile environments.
  4. The size of the priming effect increases as the amount of added treatment to the soil increases.[9]
Recent findings suggest that the same priming effect mechanisms acting in soil systems may also be present in aquatic environments, which suggests a need for broader considerations of this phenomenon in the future.[10][13]

Decomposition

One suitable definition of organic matter is biological material[disambiguation needed] in the process of decaying or decomposing, such as humus. A closer look at the biological material in the process of decaying reveals so-called organic compounds (biological molecules) in the process of breaking up (disintegrating).

The main processes by which soil molecules disintegrates are by bacterial or fungal enzymatic catalysis. If bacteria or fungi were not present on Earth, the process of decomposition would have proceeded much slower.
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Organic chemistry

 
Organic chemistry is a chemistry subdiscipline involving the scientific study of the structure, properties, and reactions of organic compounds and organic materials, i.e., matter in its various forms that contain carbon atoms.[1] Study of structure includes using spectroscopy (e.g., NMR), mass spectrometry, and other physical and chemical methods to determine the chemical composition and constitution of organic compounds and materials. Study of properties includes both physical properties and chemical properties, and uses similar methods as well as methods to evaluate chemical reactivity, with the aim to understand the behavior of the organic matter in its pure form (when possible), but also in solutions, mixtures, and fabricated forms. The study of organic reactions includes probing their scope through use in preparation of target compounds (e.g., natural products, drugs, polymers, etc.) by chemical synthesis, as well as the focused study of the reactivities of individual organic molecules, both in the laboratory and via theoretical (in silico) study.
 
The range of chemicals studied in organic chemistry include hydrocarbons, compounds containing only carbon and hydrogen, as well as myriad compositions based always on carbon, but also containing other elements,[1][2][3] especially:
In the modern era, the range extends further into the periodic table, with main group elements, including:
In addition, much modern research focuses on organic chemistry involving further organometallics, including the lanthanides, but especially the:
  • transition metals (e.g., zinc, copper, palladium, nickel, cobalt, titanium, chromium, etc.).
To be supplied
Line-angle representation
To be supplied
Ball-and-stick representation
To be supplied
Space-filling representation
 
Three representations of an organic compound, 5α-Dihydroprogesterone (5α-DHP), a steroid hormone. For molecules showing color, the carbon atoms are in black, hydrogens in gray, and oxygens in red. In the line angle representation, carbon atoms are implied at every terminus of a line and vertex of multiple lines, and hydrogen atoms are implied to fill the remaining needed valences (up to 4).

Finally, organic compounds form the basis of all earthly life and constitute a significant part of human endeavors in chemistry. The bonding patterns open to carbon, with its valence of four—formal single, double, and triple bonds, as well as various structures with delocalized electrons—make the array of organic compounds structurally diverse, and their range of applications enormous. They either form the basis of, or are important constituents of, many commercial products including pharmaceuticals; petrochemicals and products made from them (including lubricants, solvents, etc.); plastics; fuels and explosives; etc. As indicated, the study of organic chemistry overlaps with organometallic chemistry and biochemistry, but also with medicinal chemistry, polymer chemistry, as well as many aspects of materials science.[1]

Characterization

Since organic compounds often exist as mixtures, a variety of techniques have also been developed to assess purity, especially important being chromatography techniques such as HPLC and gas chromatography. Traditional methods of separation include distillation, crystallization, and solvent extraction.

Organic compounds were traditionally characterized by a variety of chemical tests, called "wet methods", but such tests have been largely displaced by spectroscopic or other computer-intensive methods of analysis.[12] Listed in approximate order of utility, the chief analytical methods are:
  • Nuclear magnetic resonance (NMR) spectroscopy is the most commonly used technique, often permitting complete assignment of atom connectivity and even stereochemistry using correlation spectroscopy. The principal constituent atoms of organic chemistry - hydrogen and carbon - exist naturally with NMR-responsive isotopes, respectively 1H and 13C.
  • Elemental analysis: A destructive method used to determine the elemental composition of a molecule. See also mass spectrometry, below.
  • Mass spectrometry indicates the molecular weight of a compound and, from the fragmentation patterns, its structure. High resolution mass spectrometry can usually identify the exact formula of a compound and is used in lieu of elemental analysis. In former times, mass spectrometry was restricted to neutral molecules exhibiting some volatility, but advanced ionization techniques allow one to obtain the "mass spec" of virtually any organic compound.
  • Crystallography is an unambiguous method for determining molecular geometry, the proviso being that single crystals of the material must be available and the crystal must be representative of the sample. Highly automated software allows a structure to be determined within hours of obtaining a suitable crystal.
Traditional spectroscopic methods such as infrared spectroscopy, optical rotation, UV/VIS spectroscopy provide relatively nonspecific structural information but remain in use for specific classes of compounds.

Properties

Physical properties of organic compounds typically of interest include both quantitative and qualitative features. Quantitative information includes melting point, boiling point, and index of refraction. Qualitative properties include odor, consistency, solubility, and color.

Melting and boiling properties

Organic compounds typically melt and many boil. In contrast, while inorganic materials generally can be melted, many do not boil, tending instead to degrade. In earlier times, the melting point (m.p.) and boiling point (b.p.) provided crucial information on the purity and identity of organic compounds.
The melting and boiling points correlate with the polarity of the molecules and their molecular weight. Some organic compounds, especially symmetrical ones, sublime, that is they evaporate without melting. A well-known example of a sublimable organic compound is para-dichlorobenzene, the odiferous constituent of modern mothballs. Organic compounds are usually not very stable at temperatures above 300 °C, although some exceptions exist.

Solubility

Neutral organic compounds tend to be hydrophobic; that is, they are less soluble in water than in organic solvents. Exceptions include organic compounds that contain ionizable groups as well as low molecular weight alcohols, amines, and carboxylic acids where hydrogen bonding occurs. Organic compounds tend to dissolve in organic solvents. Solvents can be either pure substances like ether or ethyl alcohol, or mixtures, such as the paraffinic solvents such as the various petroleum ethers and white spirits, or the range of pure or mixed aromatic solvents obtained from petroleum or tar fractions by physical separation or by chemical conversion. Solubility in the different solvents depends upon the solvent type and on the functional groups if present.

Solid state properties

Various specialized properties of molecular crystals and organic polymers with conjugated systems are of interest depending on applications, e.g. thermo-mechanical and electro-mechanical such as piezoelectricity, electrical conductivity (see conductive polymers and organic semiconductors), and electro-optical (e.g. non-linear optics) properties. For historical reasons, such properties are mainly the subjects of the areas of polymer science and materials science.

Nomenclature

 
The names of organic compounds are either systematic, following logically from a set of rules, or nonsystematic, following various traditions. Systematic nomenclature is stipulated by specifications from IUPAC. Systematic nomenclature starts with the name for a parent structure within the molecule of interest. This parent name is then modified by prefixes, suffixes, and numbers to unambiguously convey the structure. Given that millions of organic compounds are known, rigorous use of systematic names can be cumbersome. Thus, IUPAC recommendations are more closely followed for simple compounds, but not complex molecules. To use the systematic naming, one must know the structures and names of the parent structures. Parent structures include unsubstituted hydrocarbons, heterocycles, and monofunctionalized derivatives thereof.

Nonsystematic nomenclature is simpler and unambiguous, at least to organic chemists.
Nonsystematic names do not indicate the structure of the compound. They are common for complex molecules, which includes most natural products. Thus, the informally named lysergic acid diethylamide is systematically named (6aR,9R)-N,N-diethyl-7-methyl-4,6,6a,7,8,9-hexahydroindolo-[4,3-fg] quinoline-9-carboxamide.

With the increased use of computing, other naming methods have evolved that are intended to be interpreted by machines. Two popular formats are SMILES and InChI.

Structural drawings

Organic molecules are described more commonly by drawings or structural formulas, combinations of drawings and chemical symbols. The line-angle formula is simple and unambiguous. In this system, the endpoints and intersections of each line represent one carbon, and hydrogen atoms can either be notated explicitly or assumed to be present as implied by tetravalent carbon. The depiction of organic compounds with drawings is greatly simplified by the fact that carbon in almost all organic compounds has four bonds, nitrogen three, oxygen two, and hydrogen one.

Classification of organic compounds

Functional groups

 
The family of carboxylic acids contains a carboxyl (-COOH) functional group. Acetic acid, shown here, is an example.

The concept of functional groups is central in organic chemistry, both as a means to classify structures and for predicting properties. A functional group is a molecular module, and the reactivity of that functional group is assumed, within limits, to be the same in a variety of molecules.
Functional groups can have decisive influence on the chemical and physical properties of organic compounds. Molecules are classified on the basis of their functional groups. Alcohols, for example, all have the subunit C-O-H. All alcohols tend to be somewhat hydrophilic, usually form esters, and usually can be converted to the corresponding halides. Most functional groups feature heteroatoms (atoms other than C and H). Organic compounds are classified according to functional groups, alcohols, carboxylic acids, amines, etc.

Aliphatic compounds

 
The aliphatic hydrocarbons are subdivided into three groups of homologous series according to their state of saturation:
  • paraffins, which are alkanes without any double or triple bonds,
  • olefins or alkenes which contain one or more double bonds, i.e. di-olefins (dienes) or poly-olefins.
  • alkynes, which have one or more triple bonds.
The rest of the group is classed according to the functional groups present. Such compounds can be "straight-chain", branched-chain or cyclic. The degree of branching affects characteristics, such as the octane number or cetane number in petroleum chemistry.

Both saturated (alicyclic) compounds and unsaturated compounds exist as cyclic derivatives. The most stable rings contain five or six carbon atoms, but large rings (macrocycles) and smaller rings are common. The smallest cycloalkane family is the three-membered cyclopropane ((CH2)3). Saturated cyclic compounds contain single bonds only, whereas aromatic rings have an alternating (or conjugated) double bond. Cycloalkanes do not contain multiple bonds, whereas the cycloalkenes and the cycloalkynes do.

Aromatic compounds

Benzene is one of the best-known aromatic compounds as it is one of the simplest and most stable aromatics.

Aromatic hydrocarbons contain conjugated double bonds. This means that every carbon atom in the ring is sp2 hybridized, allowing for added stability. The most important example is benzene, the structure of which was formulated by Kekulé who first proposed the delocalization or resonance principle for explaining its structure. For "conventional" cyclic compounds, aromaticity is conferred by the presence of 4n + 2 delocalized pi electrons, where n is an integer. Particular instability (antiaromaticity) is conferred by the presence of 4n conjugated pi electrons.

Heterocyclic compounds

The characteristics of the cyclic hydrocarbons are again altered if heteroatoms are present, which can exist as either substituents attached externally to the ring (exocyclic) or as a member of the ring itself (endocyclic). In the case of the latter, the ring is termed a heterocycle. Pyridine and furan are examples of aromatic heterocycles while piperidine and tetrahydrofuran are the corresponding alicyclic heterocycles. The heteroatom of heterocyclic molecules is generally oxygen, sulfur, or nitrogen, with the latter being particularly common in biochemical systems.

Examples of groups among the heterocyclics are the aniline dyes, the great majority of the compounds discussed in biochemistry such as alkaloids, many compounds related to vitamins, steroids, nucleic acids (e.g. DNA, RNA) and also numerous medicines. Heterocyclics with relatively simple structures are pyrrole (5-membered) and indole (6-membered carbon ring).

Rings can fuse with other rings on an edge to give polycyclic compounds. The purine nucleoside bases are notable polycyclic aromatic heterocycles. Rings can also fuse on a "corner" such that one atom (almost always carbon) has two bonds going to one ring and two to another. Such compounds are termed spiro and are important in a number of natural products.
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Organic farming

   
Organic farming is a form of agriculture that relies on techniques such as crop rotation, green manure, compost, and biological pest control. Depending on whose definition is used, organic farming uses fertilizers and pesticides (which include herbicides, insecticides and fungicides) if they are considered natural (such as bone meal from animals or pyrethrin from flowers), but it excludes or strictly limits the use of various methods (including synthetic petrochemical fertilizers and pesticides; plant growth regulators such as hormones; antibiotic use in livestock; genetically modified organisms;[1] human sewage sludge; and nanomaterials.[2]) for reasons including sustainability, openness, independence, health, and safety.

Organic agricultural methods are internationally regulated and legally enforced by many nations, based in large part on the standards set by the International Federation of Organic Agriculture Movements (IFOAM), an international umbrella organization for organic farming organizations established in 1972.[3] The USDA National Organic Standards Board (NOSB) definition as of April 1995 is:
“Organic agriculture is an ecological production management system that promotes and enhances biodiversity, biological cycles and soil biological activity. It is based on minimal use of off-farm inputs and on management practices that restore, maintain and enhance ecological harmony."[4]
Since 1990 the market for organic food and other products has grown rapidly, reaching $63 billion worldwide in 2012.[5]:25 This demand has driven a similar increase in organically managed farmland which has grown over the years 2001-2011 at a compounding rate of 8.9% per annum.[6] As of 2011, approximately 37,000,000 hectares (91,000,000 acres) worldwide were farmed organically, representing approximately 0.9 percent of total world farmland (2009).[7]

Organic farming systems

There are several organic farming systems. Biodynamic farming is a comprehensive approach, with its own international governing body. The Do Nothing Farming method focuses on a minimum of mechanical cultivation and labor for grain crops. French intensive and biointensive, methods are well-suited to organic principles. Other examples of techniques are holistic management, permaculture, SRI and no-till farming (the last two which may be implemented in conventional or organic systems[23][24]).

Methods

Organic cultivation of mixed vegetables in Capay, California. Note the hedgerow in the background.
"An organic farm, properly speaking, is not one that uses certain methods and substances and avoids others; it is a farm whose structure is formed in imitation of the structure of a natural system that has the integrity, the independence and the benign dependence of an organism"
Wendell Berry, "The Gift of Good Land"
Organic farming methods combine scientific knowledge of ecology and modern technology with traditional farming practices based on naturally occurring biological processes. Organic farming methods are studied in the field of agroecology. While conventional agriculture uses synthetic pesticides and water-soluble synthetically purified fertilizers, organic farmers are restricted by regulations to using natural pesticides and fertilizers. The principal methods of organic farming include crop rotation, green manures and compost, biological pest control, and mechanical cultivation. These measures use the natural environment to enhance agricultural productivity: legumes are planted to fix nitrogen into the soil, natural insect predators are encouraged, crops are rotated to confuse pests and renew soil, and natural materials such as potassium bicarbonate[25] and mulches are used to control disease and weeds. Hardier plants are generated through plant breeding rather than genetic engineering.

While organic is fundamentally different from conventional because of the use of carbon based fertilizers compared with highly soluble synthetic based fertilizers and biological pest control instead of synthetic pesticides, organic farming and large-scale conventional farming are not entirely mutually exclusive. Many of the methods developed for organic agriculture have been borrowed by more conventional agriculture. For example, Integrated Pest Management is a multifaceted strategy that uses various organic methods of pest control whenever possible, but in conventional farming could include synthetic pesticides only as a last resort.[26]

Crop diversity

Crop diversity is a distinctive characteristic of organic farming. Conventional farming focuses on mass production of one crop in one location, a practice called monoculture. The science of agroecology has revealed the benefits of polyculture (multiple crops in the same space), which is often employed in organic farming.[27] Planting a variety of vegetable crops supports a wider range of beneficial insects, soil microorganisms, and other factors that add up to overall farm health. Crop diversity helps environments thrive and protect species from going extinct.[28]

Soil management

Organic farming relies heavily on the natural breakdown of organic matter, using techniques like green manure and composting, to replace nutrients taken from the soil by previous crops. This biological process, driven by microorganisms such as mycorrhiza, allows the natural production of nutrients in the soil throughout the growing season, and has been referred to as feeding the soil to feed the plant. Organic farming uses a variety of methods to improve soil fertility, including crop rotation, cover cropping, reduced tillage, and application of compost. By reducing tillage, soil is not inverted and exposed to air; less carbon is lost to the atmosphere resulting in more soil organic carbon. This has an added benefit of carbon sequestration which can reduce green house gases and aid in reversing climate change.

Plants need nitrogen, phosphorus, and potassium, as well as micronutrients and symbiotic relationships with fungi and other organisms to flourish, but getting enough nitrogen, and particularly synchronization so that plants get enough nitrogen at the right time (when plants need it most), is a challenge for organic farmers.[29] Crop rotation and green manure ("cover crops") help to provide nitrogen through legumes (more precisely, the Fabaceae family) which fix nitrogen from the atmosphere through symbiosis with rhizobial bacteria. Intercropping, which is sometimes used for insect and disease control, can also increase soil nutrients, but the competition between the legume and the crop can be problematic and wider spacing between crop rows is required. Crop residues can be ploughed back into the soil, and different plants leave different amounts of nitrogen, potentially aiding synchronization.[29] Organic farmers also use animal manure, certain processed fertilizers such as seed meal and various mineral powders such as rock phosphate and greensand, a naturally occurring form of potash which provides potassium. Together these methods help to control erosion. In some cases pH may need to be amended. Natural pH amendments include lime and sulfur, but in the U.S. some compounds such as iron sulfate, aluminum sulfate, magnesium sulfate, and soluble boron products are allowed in organic farming.[30]:43

Mixed farms with both livestock and crops can operate as ley farms, whereby the land gathers fertility through growing nitrogen-fixing forage grasses such as white clover or alfalfa and grows cash crops or cereals when fertility is established. Farms without livestock ("stockless") may find it more difficult to maintain soil fertility, and may rely more on external inputs such as imported manure as well as grain legumes and green manures, although grain legumes may fix limited nitrogen because they are harvested. Horticultural farms growing fruits and vegetables which operate in protected conditions are often even more reliant upon external inputs.[29]

Biological research into soil and soil organisms has proven beneficial to organic farming. Varieties of bacteria and fungi break down chemicals, plant matter and animal waste into productive soil nutrients. In turn, they produce benefits of healthier yields and more productive soil for future crops.[31] Fields with less or no manure display significantly lower yields, due to decreased soil microbe community, providing a healthier, more arable soil system.[32]

Weed management

Organic weed management promotes weed suppression, rather than weed elimination, by enhancing crop competition and phytotoxic effects on weeds.[33] Organic farmers integrate cultural, biological, mechanical, physical and chemical tactics to manage weeds without synthetic herbicides.

Organic standards require rotation of annual crops,[34] meaning that a single crop cannot be grown in the same location without a different, intervening crop. Organic crop rotations frequently include weed-suppressive cover crops and crops with dissimilar life cycles to discourage weeds associated with a particular crop.[33] Research is ongoing to develop organic methods to promote the growth of natural microorganisms that suppress the growth or germination of common weeds.[35]

Other cultural practices used to enhance crop competitiveness and reduce weed pressure include selection of competitive crop varieties, high-density planting, tight row spacing, and late planting into warm soil to encourage rapid crop germination.[33]

Mechanical and physical weed control practices used on organic farms can be broadly grouped as:[36]
  • Tillage - Turning the soil between crops to incorporate crop residues and soil amendments; remove existing weed growth and prepare a seedbed for planting; turning soil after seeding to kill weeds, including cultivation of row crops;
  • Mowing and cutting - Removing top growth of weeds;
  • Flame weeding and thermal weeding - Using heat to kill weeds; and
  • Mulching - Blocking weed emergence with organic materials, plastic films, or landscape fabric.[37]
Some critics, citing work published in 1997 by David Pimentel of Cornell University,[38] which described an epidemic of soil erosion worldwide, have raised concerned that tillage contribute to the erosion epidemic.[39] The FAO and other organizations have advocated a "no-till" approach to both conventional and organic farming, and point out in particular that crop rotation techniques used in organic farming are excellent no-till approaches.[39][40] A study published in 2005 by Pimentel and colleagues[41] confirmed that "Crop rotations and cover cropping (green manure) typical of organic agriculture reduce soil erosion, pest problems, and pesticide use." Some naturally sourced chemicals are allowed for herbicidal use. These include certain formulations of acetic acid (concentrated vinegar), corn gluten meal, and essential oils. A few selective bioherbicides based on fungal pathogens have also been developed. At this time, however, organic herbicides and bioherbicides play a minor role in the organic weed control toolbox.[36]

Weeds can be controlled by grazing. For example, geese have been used successfully to weed a range of organic crops including cotton, strawberries, tobacco, and corn,[42] reviving the practice of keeping cotton patch geese, common in the southern U.S. before the 1950s. Similarly, some rice farmers introduce ducks and fish to wet paddy fields to eat both weeds and insects.[43]

Controlling other organisms

Chloroxylon is used for Pest Management in Organic Rice Cultivation in Chhattisgarh, India
 
Organisms aside from weeds that cause problems on organic farms include arthropods (e.g., insects, mites), nematodes, fungi and bacteria. Organic practices include, but are not limited to:
Examples of predatory beneficial insects include minute pirate bugs, big-eyed bugs, and to a lesser extent ladybugs (which tend to fly away), all of which eat a wide range of pests. Lacewings are also effective, but tend to fly away. Praying mantis tend to move more slowly and eat less heavily. Parasitoid wasps tend to be effective for their selected prey, but like all small insects can be less effective outdoors because the wind controls their movement. Predatory mites are effective for controlling other mites.[30]:66–90

Naturally derived insecticides allowed for use on organic farms use include Bacillus thuringiensis (a bacterial toxin), pyrethrum (a chrysanthemum extract), spinosad (a bacterial metabolite), neem (a tree extract) and rotenone (a legume root extract). Fewer than 10% of organic farmers use these pesticides regularly; one survey found that only 5.3% of vegetable growers in California use rotenone while 1.7% use pyrethrum.[45]:26 These pesticides are not always more safe or environmentally friendly than synthetic pesticides and can cause harm.[30]:92 The main criterion for organic pesticides is that they are naturally derived, and some naturally derived substances have been controversial. Controversial natural pesticides include rotenone, copper, nicotine sulfate, and pyrethrums[46][47] Rotenone and pyrethrum are particularly controversial because they work by attacking the nervous system, like most conventional insecticides. Rotenone is extremely toxic to fish[48] and can induce symptoms resembling Parkinson's disease in mammals.[49][50] Although pyrethrum (natural pyrethrins) is more effective against insects when used with piperonyl butoxide (which retards degradation of the pyrethrins),[51] organic standards generally do not permit use of the latter substance.[52][53][54]

Naturally derived fungicides allowed for use on organic farms include the bacteria Bacillus subtilis and Bacillus pumilus; and the fungus Trichoderma harzianum. These are mainly effective for diseases affecting roots. Compost tea contains a mix of beneficial microbes, which may attack or out-compete certain plant pathogens,[55] but variability among formulations and preparation methods may contribute to inconsistent results or even dangerous growth of toxic microbes in compost teas.[56]
Some naturally derived pesticides are not allowed for use on organic farms. These include nicotine sulfate, arsenic, and strychnine.[57]

Synthetic pesticides allowed for use on organic farms include insecticidal soaps and horticultural oils for insect management; and Bordeaux mixture, copper hydroxide and sodium bicarbonate for managing fungi.[57] Copper sulfate and Bordeaux mixture (copper sulfate plus lime), approved for organic use in various jurisdictions,[52][53][57] can be more environmentally problematic than some synthetic fungicides dissallowed in organic farming[58][59] Similar concerns apply to copper hydroxide. Repeated application of copper sulfate or copper hydroxide as a fungicide may eventually result in copper accumulation to toxic levels in soil,[60] and admonitions to avoid excessive accumulations of copper in soil appear in various organic standards and elsewhere. Environmental concerns for several kinds of biota arise at average rates of use of such substances for some crops.[61] In the European Union, where replacement of copper-based fungicides in organic agriculture is a policy priority,[62] research is seeking alternatives for organic production.[63]

Livestock

For livestock like these healthy cows vaccines play an important part in animal health since antibiotic therapy is prohibited in organic farming

Raising livestock and poultry, for meat, dairy and eggs, is another traditional, farming activity that complements growing. Organic farms attempt to provide animals with natural living conditions and feed. While the USDA does not require any animal welfare requirements be met for a product to be marked as organic, this is a variance from older organic farming practices.[64]

Also, horses and cattle used to be a basic farm feature that provided labor, for hauling and plowing, fertility, through recycling of manure, and fuel, in the form of food for farmers and other animals. While today, small growing operations often do not include livestock, domesticated animals are a desirable part of the organic farming equation, especially for true sustainability, the ability of a farm to function as a self-renewing unit.

Genetic modification

 
A key characteristic of organic farming is the rejection of genetically engineered plants and animals. On October 19, 1998, participants at IFOAM's 12th Scientific Conference issued the Mar del Plata Declaration, where more than 600 delegates from over 60 countries voted unanimously to exclude the use of genetically modified organisms in food production and agriculture.

Although opposition to the use of any transgenic technologies in organic farming is strong, agricultural researchers Luis Herrera-Estrella and Ariel Alvarez-Morales continue to advocate integration of transgenic technologies into organic farming as the optimal means to sustainable agriculture, particularly in the developing world,[65] as does author and scientist Pamela Ronald, who views this kind of biotechnology as being consistent with organic principles.[66]

Although GMOs are excluded from organic farming, there is concern that the pollen from genetically modified crops is increasingly penetrating organic and heirloom seed stocks, making it difficult, if not impossible, to keep these genomes from entering the organic food supply. Differing regulations among countries limits the availability of GMOs to certain countries, as described in the article on regulation of the release of genetic modified organisms.

Standards

Standards regulate production methods and in some cases final output for organic agriculture. Standards may be voluntary or legislated. As early as the 1970s private associations certified organic producers. In the 1980s, governments began to produce organic production guidelines. In the 1990s, a trend toward legislated standards began, most notably with the 1991 EU-Eco-regulation developed for European Union,[67] which set standards for 12 countries, and a 1993 UK program. The EU's program was followed by a Japanese program in 2001, and in 2002 the U.S. created the National Organic Program (NOP).[68] As of 2007 over 60 countries regulate organic farming (IFOAM 2007:11). In 2005 IFOAM created the Principles of Organic Agriculture, an international guideline for certification criteria.[69] Typically the agencies accredit certification groups rather than individual farms.

Organic production materials used in and foods are tested independently by the Organic Materials Review Institute.[70]

Composting

Under USDA organic standards, manure must be subjected to proper thermophilic composting and allowed to reach a sterilizing temperature. If raw animal manure is used, 120 days must pass before the crop is harvested if the final product comes into direct contact with the soil. For products which do not come into direct contact with soil, 90 days must pass prior to harvest.[71]
 

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