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Sunday, March 9, 2014

An Explanation of Ocean Acidification and its Effects on Life

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By David J Strumfels on http://AMedelyofPotpourri.Blogspot.com/






 
 
 
 
 
 
 
 
 
(Wikipedia, 2/28/14):  "Between 1751 and 1994 surface ocean pH is estimated to have decreased from approximately 8.25 to 8.14 (how measured in 1751?),[5] representing an increase of almost 30% in H+ ion concentration in the world's oceans.[6][7] Available Earth System Models project that within the last decade ocean pH exceeded historical analogs [8] and in combination with other ocean biogeochemical changes could undermine the functioning of marine ecosystems and many ocean goods and services.[9]"

8.25 to 8.14 -- what does that mean?  What it does not mean is that the oceans are acidic, for their pH would have to be below 7.0 to say that.  In fact, we would call it alkaline (the opposite of acidity).  But acidification indicates a direction, not a specific place on the pH scale (some climate warming skeptics seem not to understand the difference) .  Chemically, pH is defined as the "negative log (hydrogen ion concentration)". But what does THAT mean?

The hydrogen ion, or H+ (a hydrogen atom without its electron, or a bare proton), is the main acidic species in water.  If the concentration of H+ is 8.00E-8 = 0.00000001 Molar (moles per liter, or just M), then the log of that number is -8.00, its negative log is 8.00, and so the pH is 8.00.  As to the specific cases here:  pH 8.25 => -8.25; antilog (-8.25), or 10 to the power of the number) yields 5.62E-9 H+ M, while 8.16 => -8.16 => 7.14E-9 H+ M.  That's a difference of 1.52E-9 H+ M concentration, or 0.00000000152M.  Yes, it is a 29% increase in acidity, mathematically.  Of course, 29% of practically nothing is even closer to actually nothing.   But chemically, especially biochemically, it can be very important.

For example, your blood pH has to be kept within a narrow range of 8.25 and 8.35, or illness, even death, can result.  I do not know all the reasons for this, but I can tell you that many biomolecules have both basic (opposite of acidic) and acidic forms, and they are chemically different.  They may have to be kept within a very narrow equilibrium of basic and acidic forms, each running a different reaction.  Or some are all necessarily basic at this pH, while others all acidic.  At pHs near 7.0 (neutrality), these equilibria are extremely sensitive to these tiny changes I outlined above.

So it is not difficult to see how a drop in 0.09 pH units (combined with a degree or two warming) could wreak havoc on numerous sea organisms, plant, animal, protozoan, or bacterial. On the other hand, the immensity of the oceans assures that there will be pH (and temperature) variations, in time and location, so sea life should be expected to be a little more hardy. But there are still fairly strict limits. The 21'st century will surely test those limits.

A little more chemistry now. We blithely speak of CO2 increasing water acidity, but how? First, CO2 is mildly soluble in water, the lower the water temperature, or the higher the water pressure, the more soluble (for thermodynamic reasons we need go into here) it is. That isn't enough for acidity, however. There has to be a chemical reaction between CO2 and H2O first: CO2 + H2O <=> HCO3- and H+. The <=> sign means the reaction goes in both directions; which set of reactants/products is favored depends on various conditions. Cold leans toward the first two, pressure the opposite way. This again is thermodynamics, with enthalpy and entropy competing against each other. At the low concentrations of CO2, in general the latter is favored. But it's still a tiny contribution of H+, enough, as you've seen, to lower ocean water an average of 0.1 pH units over the last two hundred years (and I would not be surprised if 0.5 – 0.7 units of that is within the last 30-40 years, and it ~doubles by 2100 – this is serious).

Friday, February 14, 2014

High Octane Fuels and the Use of Ethanol in Engine Fuels

You've seen and heard the word octane with relation to cars and gasoline all your life.  Well, unless you never pumped gasoline into your car.  Ever wonder what it means?  Well, the basic answer is, the higher the octane number the more smoothly the gasoline will burn in you engine, reducing any "knocking" and increasing efficiency and mpg.

But that still doesn't tell us much.  Where does this number come from, how is it determined, and what chemical and physical properties of the fuel control the final rating?
 
A little chemistry is needed to explain this.
 
Octane rating is measured relative to a mixture of 2,2,4-trimethylpentane, CH3-C(CH3)2-CH2-CH(CH3)-CH3(an isomer of octane; it has eight carbons) and n-heptane (7 carbons in a straight line).
Arbitrarily but unsurprisingly, the octane is given an octane number of 100, while the heptane is assigned 0.  Mixtures of the two are then used in engine to access their different octane numbers.  Incidentally, there are hydrocarbons with octane numbers (not to be confused with octane numbers compounds!) higher than 100, for jet and rocket fuels (which of course cannot be allowed to knock or fail).
 
You're probably asking at this point:  why not just give me pure 2,2,4-trimethylpentane at the gas pump and "put a tiger in my tank?"  Well, they could, but there'll be another tiger in your bank account as it would be horribly expensive.  Why?  Now, finally, we get to petroleum, oil, that is pumped out of the ground.  Petroleum is not one compound; it is instead a mixture of many, many different chemicals.  The cheapest way to separate them is by "fractional" distillation, which is rather like a much more complicated and expensive kind of distillation than used to turn wine into cognac, or mash into beer or whiskey, or just to extract straight ethanol.
 
So, trying to fractionate pure 2,2,4-trimethylpentane, or any pure chemical, out of crude petroleum is so expensive that only a professional race driver could afford it, if they wanted to -- they actually use other, better, fuels.  It is far easier and cheaper to just take an entire fraction of the distillation process and use that as gasoline.  Now we come to problem two, the big problem.  This fraction, untreated, will not perform well in gasoline engines because its octane number is simply not up there enough; certainly not the 86 of the standard gasoline you buy at the pump.  So -- what might we add to the fraction to get its octane number up to 86, or 89, or 91-93 (pump standards)?

The standard method for boosting octane is to add an additive.  The first additive (that I know of) was tetraethyl lead.  Because of its spherical shape, this compound was very effect.  It did have a serious downside however.  Burning it in a car engine spewed lead and lead compounds into the atmosphere, where it could be inhaled/absorbed into bodies and do real damage there -- rather like mercuric compounds.  Thus, tetraethyl lead was gradually phased out, and the search for a safer additive was undertaken.  The first(?) of these was methyl tert-ethyl ether, or methyl - O - C(Me)3.  Like tetraethyl lead it also it is also highly spherical, making it an excellent octane booster.  Unfortunately, it ran into another problem.  It tended to seep into groundwater from tanks, poisoning water supplies.  So it too, in the end was phased out.

Nowadays we mix up to 10% corn-ethanol (drinking alcohol) into gasoline to improve its anti-knock properties.  A second reason is that, ethanol being derived from atmospheric carbon dioxide, doesn't increase the level of this important greenhouse gas, thus helping to fight anthropogenic climate warming.  Many environmentalists was to increase it to 15% -- but there are negatives to it to that cause others to rid it altogether is gasoline.  The problem is gasoline containing ethanol is especially subject to absorbing atmospheric moisture, then forming gums, solids, or two phases (a hydrocarbon phase floating on top of a water-alcohol phase), all of which shorten the lives of engines.  This is why ethanol is still not the perfect additive.  It also takes a great quantity of land to grow a sufficient quantity of corn, which drives it and other vegetables up in price.

I claim no knowledge of what a perfect additive would be.  Perhaps we will have migrated from natural gasoline to syn-fuel mixtures derived from algae/plants first, via genetic engineering (as we already are), if that is, electricity and hydrogen/LNG don't get there first.

Thursday, February 6, 2014

Soil, Weedkillers And GMOs: When Numbers Don't Tell The Whole Story

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Farm statistics: usually illuminating ... occasionally misleading.
Farm statistics: usually illuminating ... occasionally misleading.
Seth Perlman/AP

I love numbers. A picture may be worth a thousand words, but I think a good bar graph can be worth a thousand pictures.

But three times in the past few days, I've come across statistics in reputable-looking publications that made me stop and say, "Huh?"

I did some investigating so you don't have to. And indeed, the numbers don't quite tell the story that they purport to tell.

So here goes: My skeptical inquiry into statistics on herbicide use, soil erosion, and the production of fruits and nuts.

First, weedkillers (and GMOs). I was struck by this graph, which appeared in a report issued by Food and Water Watch, an environmentalist group.
Herbicide use data from Food and Water Watch
Food and Water Watch

The report was published a while ago, but Tom Philpott reused it recently in a post for the website of Mother Jones magazine. The point of the chart is to show how increases in herbicide use on soybeans, corn, and cotton have gone hand-in-hand with the rise of genetically modified, herbicide-tolerant, versions of those crops.

That link seems logical, but still, farmers have been planting more corn and soybeans in recent years. How much of this soaring curve is simply because farmers have more acres to cover?

I dived into the USDA numbers, and discovered, first of all, that they're fragmentary. In recent years, the USDA didn't collect such numbers for all three crops in all years. The curve, in this case, is based on just two data points.

No matter. I took the numbers that were available and divided them by the number of acres planted. (I'm using a column chart to make clear for which years we have data.) Suddenly, the trend doesn't seem quite so dramatic.
Herbicide use on corn, soybeans and cotton — break it down per acre and it's not so dramatic.
Herbicide use on corn, soybeans and cotton — break it down per acre and it's not so dramatic.
NPR using USDA data

And how do we know if herbicide-tolerant GMOs are driving this increase? What if it's something else entirely? For comparison, I decided to look at herbicide use in wheat, since no GMO wheat is being planted. Here's a graph of herbicide use in wheat, per acre, over the same period of time.

Whoa. No GMOs here, and herbicide use went up at a faster rate. (In absolute amounts, farmers still use much less herbicide on wheat than on soybeans or corn.)
Herbicide use per acre on wheat has been going up a lot in recent years.
Herbicide use per acre on wheat has been going up a lot in recent years.
NPR using USDA data
 
What could be driving this increase, if not herbicide-tolerant GMOs? I called a few wheat experts in Kansas and Oregon, who mentioned some possibilities.

First, farmers are reducing their use of tillage to control weeds, in part to conserve their soil. Many are relying more on chemical weedkillers instead. Second, with grain prices high, farmers are more inclined to spend more money on anything that will boost yields.

Both of these factors are probably influencing herbicide use in corn and soybeans, too. They may be more important than the popularity of GMOs.

One thing, though, is perfectly clear. The rise of glyphosate-tolerant GMOs did persuade farmers to use much more of that particular chemical. Some argue that a new generation of GMOs that are tolerant to other weedkillers will drive further increases in herbicide use.

Maybe they will. I'll wait for the numbers.

Next up, soil erosion. Here are two maps that caught my attention. They're published in a report called the National Resources Inventory, released last week by the USDA's Natural Resources Conservation Service. (I should also tell you that the NRCS is one of my very favorite federal agencies; please don't hold this post against it.)
The soil erosion situation looked pretty bad in 1982.
U.S. Dept. of Agriculture/NRCS

The dramatic shrinkage of those red and orange blotches along America's major rivers is terrific news. It shows that less topsoil is washing away today, compared with 1982.
Fast-forward almost 30 years, and soil erosion suddenly looks much better. But that's not the whole story.
U.S. Dept. of Agriculture/NRCS
 
Intrigued by this apparent good-news story, I called Craig Cox, in the Iowa office of the Environmental Working Group.

Cox already knew about this map. He wasn't happy about it. In his view, it obscures more than it reveals.

According to Cox, the good news is old news. Practically all of the dramatic progress in fighting soil erosion occurred 15 years ago, between 1982 and 1997. At that time, "we were on a really solid pathway to finally getting on top of this ancient enemy," he says.

Since 1997, however, progress has stalled, so the map paints an overly cheerful picture. (In fairness to NRCS, there is another, less prominent, graph in the report that does show this stagnation in anti-erosion efforts.)

In addition, there's a basic problem with these data, Cox says: "They only capture one kind of erosion," called sheet and rill erosion. This is the erosion that happens evenly across a field, and can be predicted from the amount of rain, the field's slope, its soil type and whether it is bare or covered by grass. The NRCS data are based on such predictions, and the estimated improvements since 1982 happened mainly because farmers are tilling less, and protecting more of their land with vegetation.

By contrast, no models can predict when something more catastrophic will occur; when small rivulets of water combine into larger, fast-moving streams that cut deep ditches, or gullies, into a field. According to Cox, those gullies actually carry off more soil than the predictable kinds of erosion, and they were especially bad during the storms that hit the Midwest last spring and summer.

So my straightforward good-news story about soil erosion evaporated.

Finally, there was a second surprising statistic buried deep inside that NRCS report, and I noticed it only because of a press release that the USDA put out. According to that release, the NRCS's National Resources Inventory detected "a boom in land dedicated to growing fruits, nuts and flowers, increasing from 124,800 acres in 2007 to 273,800 in 2010."

Wow! I looked at the numbers again. In fact, the boom was only in a category of production called "cultivated" fruit and nut production. Turns out, that's a tiny category, barely worth counting. It apparently refers to orchards in which there's also some tillage going on to grow a second crop.

"Uncultivated" fruit, nut, and flower production, by contrast, went from 4.7 million acres in 2007 to 4.4 million acres in 2010.

Sorry. No boom.

Has anyone noticed the biggest (I think) problem with the Biblical Ark that makes the whole story utterly impossible?  It's staring you in the face.

The ark was built on land.  Therefor, as the picture shows, it has no keel -- it's flat-bottomed.  Look at serious ocean going ships and they are all built largely in water because they have a keel:


 
The keel converts sideways force into a forward force.  This is absolutely essential for ocean going vessels, both to propel them and to keep them from floundering in rough seas.  On rivers, inland bays, along coasts -- the only types of sea going known when the ark was allegedly built -- flat bottoms were sufficient.  It was only the invention of keels, both in Europe and China, that truly allowed for ships that could traverse thousands of miles of open ocean reasonably safely.
 
So a unkeeled-vessel simply could not stay afloat on the worldwide ocean the Flood would have caused; the entire planet would essentially be one gigantic ocean.  Of course Noah nor his followers could have known that, but that doesn't matter because Yahweh gave the instructions -- wait a minute; why doesn't Yahweh know?  And how can we be here to discuss it when the ark certaintly sank with all hands (including the animals), unless by miracle the ark survives anyway, something Yahweh could have pulled off -- but then, why have the ark built in the first place?
 
Praise be until His wisdom and power.

Tuesday, February 4, 2014

How Prohibition Makes Heroin More Dangerous

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Because someone famous died in Manhattan from an apparent heroin overdose on Sunday, The New York Times has a front-page story today about "a city that is awash in cheap heroin." How cheap? The Times says a bag of heroin, which typically contains about 100 milligrams, "can sell for as little as $6 on the street." Yet it also reports that the Drug Enforcement Administration's New York office last year "seized 144 kilograms of heroin...valued at roughly $43 million." Do the math ($43 million divided by 144,000 grams), and that comes out to about $300 per gram, or $30 for a 100-milligram bag—six times the retail price mentioned higher in the same story. So how did the DEA come up with that $43 million estimate? Apparently by assuming that all of the heroin it seized would have ended up in New England, where a "$6 bag in the city could fetch as much as $30 or $40."

In addition to illustrating the creative calculations behind drug warriors' "street value" estimates, the story shows how prohibition magnifies drug hazards by creating a black market where quality and purity are unpredictable:
Recently, 22 people died in and around Pittsburgh after overdosing from a batch of heroin mixed with fentanyl, a powerful opiate usually found in patches given to cancer patients. Heroin containing fentanyl, which gives a more intense but potentially more dangerous high, has begun to appear in New York City, said Kati Cornell, a spokeswoman for Bridget G. Brennan, the special narcotics prosecutor for the city. An undercover officer bought fentanyl-laced heroin on Jan. 14 from a dealer in the Bronx, she said. The dealer did not warn of the mixture, which is not apparent to the user; subsequent testing revealed it. (The patches themselves had turned up in drug seizures in the city before, she said.) 
Ultimately, users have no way to be sure what they're buying. "There's no F.D.A. approval; it's made however they decide to make it that day," Ms. Brennan said.
According to the Substance Abuse and Mental Health Services Administration, fentanyl is "roughly 50-80 times more potent than morphine," so it's the sort of ingredient you'd want to know about before snorting or injecting that white powder you just bought. This kind of thing—passing one drug off as another, delivering something much more (or less) potent than the customer expects—almost never happens in a legal market. When was the last time you bought a bottle of 80-proof whiskey that turned out to be 160 proof? The main reason liquor buyers do not have to worry about such a switcheroo is not that distillers are regulated, or even that their customers, unlike consumers in a black market, have legal recourse in case of fraud. The main reason is that legitimate businesses need to worry about their reputations if they want to keep customers coming back. It is hard to build and maintain a reputation in a black market, where brands do not mean much:
The same shipment of heroin may be packaged under several different labels, she said. "At the big mills, we'll seize 20 stamps. It's all the same."...
The Police Department on Monday said detectives were working to track down the origin of the substances Mr. Hoffman used, though a police official conceded it could be difficult to determine. "Just because it's a name brand doesn't mean that anyone has an exclusive on that name," the official said. "Ace of Spades; I would venture to say that someone else has used that name."
The takeaway: After a century of attempts to stamp out the heroin trade, the drug is cheap, plentiful, and much more dangerous than it would otherwise be.
Jacob Sullum is a senior editor at Reason magazine and a nationally syndicated columnist.

Finally, a Confession ABout Global Warming and the Turn it Has Been Taking for a While Now.

Will Sidelining Science Help Advance the Climate Debate?

By Keith Kloor | February 4, 2014 3:17 pm
From the Department of Counterintuitive Thinking:
"The debate about climate change needs to become more political, and less scientific."
That is from climate researcher Mike Hulme, in a provocative essay at The Conversation. The above quote makes more sense when you read the sentence that follows:
"Articulating radically different policy options in response to the risks posed by climate change is a good way of reinvigorating democratic politics."
I’m all for this, but you can only have a robust debate about potential solutions if enough people feel strongly that there is a globally significant threat worth discussing and acting on. But the nature of the climate problem–its complexity and timescale–make it hard for us to wrap our minds around. For a recent explanation on why that is, read this piece by Bryan Walsh in Time, headlined:
Why we don’t care about saving our grandchildren from climate change
The biggest stumbling block, as Walsh notes, is that “climate policy asks the present to sacrifice for the future.” Even western Europe, which has perhaps the most climate-concerned citizenry, is now less inclined to do this.

So context is everything in the climate debate. Hulme argues that we should proceed from this framework:
What matters is not whether the climate is changing (it is); nor whether human actions are to blame (they are, at the very least partly and, quite likely, largely); nor whether future climate change brings additional risks to human or non-human interests (it does)…in the end, the only question that matters is, what are we going to do about it?
No, what matters equally is just how much we feel threatened (right now) by the risks of climate change. This is what David Ropeik gets into when he talks about our “risk perception gap.” (See here and here.) Several years ago, Andy Revkin helpfully summarized a body of behavioral research:
a large part of the climate challenge is not out in the world of eroding glaciers and limited energy choices, but inside the human mind.
There’s the “finite pool of worry” (Did we pay the rent this month?). There’s “single action bias” (I changed bulbs; all set.) There are powerful internal filters (dare I say blinders?) that shape how different people see the same body of information.
And of course there’s the hard reality that the risks posed by an unabated rise in greenhouse-gas emissions are still mainly somewhere and someday while our attention, as individuals and communities, is mostly on the here and now.

I agree with Hulme when he says that debates about climate change “will not be settled by scientific facts,” but rather will turn on “debates about values and about the forms of political organisation and representation that people believe are desirable.”

This is why I’ve said numerous times that the symbolic importance of the Keystone pipeline is under-appreciated by many commentators. In of itself this one pipeline isn’t going to affect the trajectory of climate change, but climate activists have effectively used it as a means to build a larger movement that is very much values-oriented, as in: Should we continue supporting an energy infrastructure that reinforces societal dependence on fossil fuels ?

That is an important question to take up in the context of climate change. And it’s likely more productive to engage it from a values–rather than a risk–perspective.
 

A Beautiful Map of Global Ocean Currents

A Beautiful Map of Global Ocean Currents
A fitting addition to his interactive global windmap, Cameron Beccario's interactive map of Earth's ocean currents takes near-realtime data-mapping to the seas – and the results are mesmerizing.
If the previous incarnation of Beccario's weather-modeling applet bore a passing similarity to NASA's spellbinding Perpetual Ocean video, this newest version resembles it even more. As with the Agency's visualization, Beccario's earth portrays the surface currents that flow and twist their way across Earth's surface. The key difference between earth and Perpetual Ocean, however, is that the latter depicts currents between June 2005 and December 2007, whereas the former depicts them in near real-time. As with similar weather-maps, earth relies on data compiled by NOAA's Global Forecast System to update its global wind patterns every three hours, and OSCAR Earth & Space Research to update its ocean surface current patterns every five days.
A Beautiful Map of Global Ocean Currents
The ability to select from eight different map projections when visualizing the data adds an extra layer to the experience. Go try it out for yourself!

Representation of a Lie group

From Wikipedia, the free encyclopedia https://en.wikipedia.org/wiki/Representation_of_a_Lie_group...