From Wikipedia, the free encyclopedia
In biology, quorum sensing is the ability to detect and to respond to cell population density by gene regulation. As one example, quorum sensing (QS) enables bacteria to restrict the expression of specific genes to the high cell densities at which the resulting phenotypes will be most beneficial. Many species of bacteria use quorum sensing to coordinate gene expression according to the density of their local population. In a similar fashion, some social insects use quorum sensing to determine where to nest. Quorum sensing may also be useful for cancer cell communications.
In addition to its function in biological systems, quorum sensing
has several useful applications for computing and robotics. In general,
quorum sensing can function as a decision-making process in any decentralized system
in which the components have: (a) a means of assessing the number of
other components they interact with and (b) a standard response once a
threshold number of components is detected.
Discovery
Quorum sensing was first reported in 1970, by Kenneth Nealson, Terry Platt, and J. Woodland Hastings, who observed what they described as a conditioning of the medium in which they had grown the photoluminescent marine bacterium Aliivibrio fischeri. These bacteria did not synthesize luciferase—and
therefore did not luminesce—in freshly inoculated culture but only
after the bacterial population had increased significantly. Because they
attributed this conditioning of the medium to the growing population of
cells itself, they referred to the phenomenon as autoinduction.
Bacteria
Some of the best-known examples of quorum sensing come from studies of bacteria. Bacteria use quorum sensing to regulate certain phenotype expressions, which in turn, coordinate their behaviours. Some common phenotypes include biofilm formation, virulence factor expression, and motility. Certain bacteria are able to use quorum sensing to regulate bioluminescence, nitrogen fixation and sporulation.
The quorum-sensing function is based on the local density of the bacterial population in the immediate environment. It can occur within a single bacterial species, as well as between diverse species. Both Gram-positive and gram-negative bacteria use quorum sensing, but there are some major differences in their mechanisms.
Mechanism
For
the bacteria to use quorum sensing constitutively, they must possess
three characteristics: to secrete a signaling molecule, an autoinducer, to detect the change in concentration of signaling molecules, and to regulate gene transcription as a response. This process is highly dependent on the diffusion
mechanism of the signaling molecules. QS Signaling molecules are
usually secreted at a low level by individual bacteria. At low cell
density, the molecules may just diffuse away. At high cell density, the
local concentration of signaling molecules may exceed its threshold
level, and trigger changes in gene expressions.
Gram-positive Bacteria
Gram-positive bacteria use autoinducing peptide (AIP) as their autoinducers.
When gram-positive bacteria detect high concentration of AIP in their environment, AIP binds to a receptor to activate a kinase. The kinase phosphorylates a transcription factor, which regulates gene transcription. This is called a two-component system.
Another possible mechanism is that AIP is transported into the
cytosol, and binds directly to a transcription factor to initiate or
inhibit transcription.
Gram-negative Bacteria
Gram-negative bacteria produce N-acyl homoserine lactones (AHL) as their signaling molecule. Usually AHLs do not need additional processing, and bind directly to transcription factors to regulate gene expression.
Some gram-negative bacteria may use the two-component system as well.
Quorum sensing of Gram-Negative cell
Examples
Aliivibrio fischeri
The bioluminescent bacterium A. fischeri is the first organism in which QS was observed. It lives as a mutualistic symbiont in the photophore (or light-producing organ) of the Hawaiian bobtail squid. When A. fischeri cells are free-living (or planktonic),
the autoinducer is at low concentration, and, thus, cells do not show
luminescence. However, when the population reaches the threshold in the
photophore (about 1011 cells/ml), transcription of luciferase is induced, leading to bioluminescence.
In V. fischeri bioluminescence is regulated by AHLs ( N-acyl-homoserine
lactones) which is a product of LuxI gene whose transcription is
regulated by the LuxR activator. LuxR works only when AHLs binds to the
LuxR.
Curvibacter sp.
Curvibacter sp.
is a Gram-negative curved rod-formed bacteria which is the main
colonizer of the epithelial cells surfaces of the early branching
metazoan Hydra vulgaris. Sequencing the complete genome uncovered a circular chromosome (4.37 Mb), a plasmid (16.5 kb), and two operons coding each for an AHL (N-acyl-homoserine lactone) synthase (curI1 and curI2) and an AHL receptor (curR1 and curR2). Moreover, a study showed that host associated bacteria Curvibacter produce a broad spectrum of AHL, explaining the presence of those operons. As mentioned before, AHL are the quorum sensing molecules of Gram-negative bacteria, which means Curvibacter has a quorum sensing activity.
Even though their function in host-microbe interaction is largely unknown, Curvibacter quorum-sensing signals were relevant for host-microbe interactions. Indeed, due to the oxidoreductase activity of Hydra,
there is a modification of AHL signalling molecules, to know
3-oxo-homoserine lactone into 3-hydroxy-homoserine lactone, which leads
to a different host-microbe interaction. On one hand, a phenotypic
switch of the colonizer Curvibacter takes place. The most likely
explanation is that the binding of 3-oxo-HSL and 3-hydroxy-HSL causes
different conformational changes in the AHL receptors curR1 and curR2. As a result, there is a different DNA-binding motif affinity and thereby different target genes are activated. On the other hand, this switch modifies its ability to colonize the epithelial cell surfaces of Hydra vulgaris. Indeed, one explanation is that with a 3-oxo-HSL quorum-sensing signal, there is an up-regulation of flagellar assembly. Yet, flagellin, the main protein component of flagella, can act as an immunomodulator and activate the innate immune response in Hydra. Therefore, bacteria have less chance to evade the immune system and to colonize host tissues. Another explanation is that 3-hydroxy-HSL induces carbon metabolism and fatty acid degradation genes in Hydra.
This allows the bacterial metabolism to adjust itself to the host
growth conditions, which is essential for the colonization of the
ectodermal mucus layer of Hydra.
Escherichia coli
In the Gram-negative bacterium Escherichia coli (E. coli), cell division may be partially regulated by AI-2-mediated quorum sensing. This species uses AI-2, which is produced and processed by the lsr operon. Part of it encodes an ABC transporter,
which imports AI-2 into the cells during the early stationery (latent)
phase of growth. AI-2 is then phosphorylated by the LsrK kinase, and the newly produced phospho-AI-2 can be either internalized or used to suppress LsrR, a repressor of the lsr operon (thereby activating the operon). Transcription of the lsr operon is also thought to be inhibited by dihydroxyacetone phosphate (DHAP) through its competitive binding to LsrR. Glyceraldehyde 3-phosphate has also been shown to inhibit the lsr operon through cAMP-CAPK-mediated inhibition. This explains why, when grown with glucose, E. coli will lose the ability to internalize AI-2 (because of catabolite repression). When grown normally, AI-2 presence is transient.
E. coli and Salmonella enterica do not produce AHL
signals commonly found in other Gram-negative bacteria. However, they
have a receptor that detects AHLs from other bacteria and change their
gene expression in accordance with the presence of other "quorate"
populations of Gram-negative bacteria.
Gram positive bacteria quorum sensing
Salmonella enterica
Salmonella
encodes a LuxR homolog, SdiA, but does not encode an AHL synthase. SdiA
detects AHLs produced by other species of bacteria including Aeromonas hydrophila, Hafnia alvei, and Yersinia enterocolitica. When AHL is detected, SdiA regulates the rck operon on the Salmonella virulence plasmid (pefI-srgD-srgA-srgB-rck-srgC) and a single gene horizontal acquisition in the chromosome srgE. Salmonella
does not detect AHL when passing through the gastrointestinal tracts of
several animal species, suggesting that the normal microbiota does not
produce AHLs. However, SdiA does become activated when Salmonella transits through turtles colonized with Aeromonas hydrophila or mice infected with Yersinia enterocolitica. Therefore, Salmonella appears to use SdiA to detect the AHL production of other pathogens rather than the normal gut flora.
Pseudomonas aeruginosa
The opportunistic pathogen Pseudomonas aeruginosa uses quorum sensing to coordinate the formation of biofilm, swarming motility, exopolysaccharide production, virulence, and cell aggregation.
These bacteria can grow within a host without harming it until they
reach a threshold concentration. Then they become aggressive, developing
to the point at which their numbers are sufficient to overcome the
host's immune system, and form a biofilm, leading to disease within the host as the biofilm is a protective layer encasing the bacteria population. Another form of gene regulation that allows the bacteria to rapidly adapt to surrounding changes is through environmental signaling. Recent studies have discovered that anaerobiosis
can significantly impact the major regulatory circuit of quorum
sensing. This important link between quorum sensing and anaerobiosis has
a significant impact on the production of virulence factors of this organism.
It is hoped that the therapeutic enzymatic degradation of the signaling
molecules will prevent the formation of such biofilms and possibly
weaken established biofilms. Disrupting the signaling process in this
way is called quorum sensing inhibition.
Acinetobacter sp.
It has recently been found that Acinetobacter sp. also show quorum sensing activity. This bacterium, an emerging pathogen, produces AHLs. Acinetobacter
sp. shows both quorum sensing and quorum quenching activity. It
produces AHLs and also, it can degrade the AHL molecules as well.
Aeromonas sp.
This bacterium was previously considered a fish pathogen, but it has recently emerged as a human pathogen. Aeromonas
sp. have been isolated from various infected sites from patients (bile,
blood, peritoneal fluid, pus, stool and urine). All isolates produced
the two principal AHLs, N-butanoylhomoserine lactone (C4-HSL) and
N-hexanoyl homoserine lactone (C6-HSL). It has been documented that
Aeromonas sobria has produced C6-HSL and two additional AHLs with N-acyl
side chain longer than C6.
Yersinia
The YenR and YenI proteins produced by the gammaproteobacterium Yersinia enterocolitica are similar to Aliivibrio fischeri LuxR and LuxI. YenR activates the expression of a small non-coding RNA, YenS. YenS inhibits YenI expression and acylhomoserine lactone production. YenR/YenI/YenS are involved in the control of swimming and swarming motility.
Molecules involved
Three-dimensional structures of proteins involved in quorum sensing were first published in 2001, when the crystal structures of three LuxS orthologs were determined by X-ray crystallography. In 2002, the crystal structure of the receptor LuxP of Vibrio harveyi with its inducer AI-2 (which is one of the few biomolecules containing boron) bound to it was also determined. Many bacterial species, including E. coli,
an enteric bacterium and model organism for Gram-negative bacteria,
produce AI-2. A comparative genomic and phylogenetic analysis of 138
genomes of bacteria, archaea, and eukaryotes found that "the LuxS enzyme required for AI-2 synthesis is widespread in bacteria, while the periplasmic binding protein
LuxP is present only in Vibrio strains," leading to the conclusion that
either "other organisms may use components different from the AI-2
signal transduction system of Vibrio strains to sense the signal of AI-2
or they do not have such a quorum sensing system at all." Farnesol is used by the fungus Candida albicans as a quorum sensing molecule that inhibits filamentation.
A database of quorum-sensing peptides is available under the name Quorumpeps.
Certain bacteria can produce enzymes called lactonases
that can target and inactivate AHLs.
Researchers have developed novel molecules which block the signalling
receptors of bacteria (Quorum quenching). mBTL is a compound that has
been shown to inhibit quorum sensing and decrease the amount of cell
death by a significant amount.
Additionally, researchers are also examining the role of natural compounds (such as caffeine) as potential quorum sensing inhibitors. Research in this area has been promising and could lead to the development of natural compounds as effective therapeutics.
Evolution
Sequence analysis
The
majority of quorum sensing systems that fall under the "two-gene" (an
autoinducer synthase coupled with a receptor molecule) paradigm as
defined by the Vibrio fischeri system occur in the Gram-negative Proteobacteria. A comparison between the Proteobacteria phylogeny as generated by 16S ribosomal RNA
sequences and phylogenies of LuxI-, LuxR-, or LuxS-homologs shows a
notably high level of global similarity. Overall, the quorum sensing
genes seem to have diverged along with the Proteobacteria phylum as a
whole. This indicates that these quorum sensing systems are quite
ancient, and arose very early in the Proteobacteria lineage.
Although examples of horizontal gene transfer
are apparent in LuxI, LuxR, and LuxS phylogenies, they are relatively
rare. This result is in line with the observation that quorum sensing
genes tend to control the expression of a wide array of genes scattered
throughout the bacterial chromosome. A recent acquisition by horizontal
gene transfer would be unlikely to have integrated itself to this
degree. Given that the majority of autoinducer–synthase/receptor occurs
in tandem in bacterial genomes, it is also rare that they switch
partners and so pairs tend to co-evolve.
In quorum sensing genes of Gammaproteobacteria, which includes Pseudomonas aeruginosa and Escherichia coli,
the LuxI/LuxR genes form a functional pair, with LuxI as the
auto-inducer synthase and LuxR as the receptor. Gamma Proteobacteria are
unique in possessing quorum sensing genes, which, although functionally
similar to the LuxI/LuxR genes, have a markedly divergent sequence. This family of quorum-sensing homologs
may have arisen in the gamma Proteobacteria ancestor, although the
cause of their extreme sequence divergence yet maintenance of functional
similarity has yet to be explained. In addition, species that employ
multiple discrete quorum sensing systems are almost all members of the
gamma Proteobacteria, and evidence of horizontal transfer of quorum
sensing genes is most evident in this class.
Interaction of quorum-sensing molecules with mammalian cells and its medical applications
Next
to the potential antimicrobial functionality, quorum-sensing derived
molecules, especially the peptides, are being investigated for their use
in other therapeutic domains as well, including immunology, central
nervous system disorders and oncology. Quorum-sensing peptides have been
demonstrated to interact with cancer cells, as well as to permeate the
blood-brain barrier permeation reaching the brain parenchyma.
Viruses
A mechanism involving Arbitrium has recently been described in bacteriophages infecting several Bacillus species.
The viruses communicate with each other to ascertain their own density
compared to potential hosts. They use this information to decide whether
to enter a lytic or lysogenic life-cycle.
Archaea
Examples
Methanosaeta harundinacea 6Ac
Methanosaeta harundinacea
6Ac, a methanogenic archaeon, produces carboxylated acyl homoserine
lactone compounds that facilitate the transition from growth as short
cells to growth as filaments.
Plants
Quorum
sensing could be described when it was known that bacteria possess the
ability to communicate. In the last few years, interactions between
bacteria and eukaryotic
hosts, such as plants, have been shown. These interactions are
facilitated by quorum-sensing molecules and play a major role in
maintaining the pathogenicity of bacteria towards other hosts, such as
humans. This mechanism can be understood by looking at the effects of N-Acyl homoserine lactone (AHL), one of the quorum sensing-signaling molecules in gram-negative bacteria, on plants. The model organism used is Arabidopsis thaliana.
The role of AHLs having long carbon-chains (C12, C14), which have
an unknown receptor mechanism, is less well understood than AHLs having
short carbon-chains (C4, C6, C8), which are perceived by the G protein-coupled receptor.
A phenomenon called "AHL priming", which is a dependent signalling
pathway, enhanced our knowledge of long-chain AHLs. The role of
quorum-sensing molecules was better explained according to three
categories: host physiology–based impact of quorum sensing molecules;
ecological effects; and cellular signaling. Calcium signalling and calmodulin have a large role in short-chain AHLs response in Arabidopsis. Research was also conducted on barley and crop yam bean that reveals the AHLs determining the detoxification enzymes called GST were found less in yam bean.
Quorum sensing-based regulatory systems are necessary to
plant-disease-causing bacteria. Looking towards developing new
strategies based on plant-associated microbiomes, the aim of further
study is to improve the quantity and quality of the food supply. Further
research into this inter-kingdom communication also enhances the
possibility of learning about quorum sensing in humans.
Quorum quenching
Quorum quenching is the process of preventing quorum sensing by disrupting signalling.
This is achieved by inactivating signalling enzymes, by introducing
molecules that mimic signalling molecules and block their receptors, by
degrading signalling molecules themselves, or by a modification of the
quorum sensing signals due to an enzyme activity.
Inhibition of signalling molecules
Closantel and triclosan are known inhibitors of quorum sensing enzymes.
Closantel induces aggregation of the histidine kinase sensor in
two-component signalling. The latter disrupts the synthesis of a class
of signalling molecules known as N-acyl homoserine lactones (AHLs) by blocking the enoyl-acyl carrier protein (ACP) reductase.
Mimicking of signalling molecules
Two
groups of well-known mimicking molecules include halogenated furanones,
which mimic AHL molecules, and synthetic Al peptides (AIPs), which
mimic naturally occurring AIPs. These groups inhibit receptors from
binding substrate or decrease the concentration of receptors in the
cell. Furanones have also been found to act on AHL-dependant transcriptional activity, whereby the half life of the autoinducer-binding LuxR protein is significantly shortened.
Degradation of signalling molecules
Recently,
a well-studied quorum quenching bacterial strain (KM1S) was isolated
and its AHL degradation kinetic was studied using rapid resolution
liquid chromatography (RRLC).
RRLC efficiently separates components of a mixture to a high degree of
sensitivity, based on their affinities for different liquid phases.
It was found that the genome of this strain encoded an inactivation
enzyme with distinct motifs targeting the degradation of AHLs.
Modification of signalling molecules
As
mentioned before, N-acyl-homoserine lactones (AHL) are the quorum
sensing signaling molecules of the Gram-negative bacteria. However,
these molecules may have different functional groups on their acyl
chain, and also a different length of acyl chain. Therefore, there exist
many different AHL signaling molecules, for example,
3-oxododecanoyl-L-homoserine lactone (3OC12-HSL) or
3-hydroxydodecanoyl-L-homoserine lactone (3OHC12-HSL). The modification
of those quorum sensing (QS) signaling molecules is another sort of
quorum quenching. This can be carried out by an oxidoreductase activity. As an example, we will discuss the interaction between a host, Hydra vulgaris, and the main colonizer of its epithelial cell surfaces, Curvibacter sp. Those bacteria produce 3-oxo-HSL quorum sensing molecules. However, the oxidoreductase activity of the polyp Hydra is able to modify the 3-oxo-HSL into their 3-hydroxy-HSL counterparts.
We can characterize this as quorum quenching since there is an
interference with quorum sensing molecules. In this case, the outcomes
are different than just QS inactivation. Indeed, the host modification
results in a phenotypic switch of Curvibacter, which modify its ability
to colonize the epithelial cell surfaces of Hydra vulgaris.
Applications
Applications
of quorum quenching that have been exploited by humans include the use
of AHL-degrading bacteria in aquacultures to limit the spread of
diseases in aquatic populations of fish, mollusks and crustaceans.
This technique has also been translated to agriculture, to restrict the
spread of pathogenic bacteria that use quorum sensing in plants.
Anti-biofouling is another process that exploits quorum quenching
bacteria to mediate the dissociation of unwanted biofilms aggregating on
wet surfaces, such as medical devices, transportation infrastructure
and water systems.
Quorum quenching is recently studied for the control of fouling and
emerging contaminants in electro membrane bioreactors (eMBRs) for the
advanced treatment of wastewater.
Social insects
Social insect colonies are an excellent example of a decentralized system,
because no individual is in charge of directing or making decisions for
the colony. Several groups of social insects have been shown to use
quorum sensing in a process that resembles collective decision-making.
Examples
Ants
Colonies of the ant Temnothorax albipennis
nest in small crevices between rocks. When the rocks shift and the nest
is broken up, these ants must quickly choose a new nest to move into.
During the first phase of the decision-making process, a small portion
of the workers leave the destroyed nest and search for new crevices.
When one of these scout ants finds a potential nest, she assesses the
quality of the crevice based on a variety of factors including the size
of the interior, the number of openings (based on light level), and the
presence or absence of dead ants.
The worker then returns to the destroyed nest, where she waits for a
short period before recruiting other workers to follow her to the nest
that she has found, using a process called tandem running.
The waiting period is inversely related to the quality of the site; for
instance, a worker that has found a poor site will wait longer than a
worker that encountered a good site.
As the new recruits visit the potential nest site and make their own
assessment of its quality, the number of ants visiting the crevice
increases. During this stage, ants may be visiting many different
potential nests. However, because of the differences in the waiting
period, the number of ants in the best nest will tend to increase at the
greatest rate. Eventually, the ants in this nest will sense that the
rate at which they encounter other ants has exceeded a particular
threshold, indicating that the quorum number has been reached.
Once the ants sense a quorum, they return to the destroyed nest and
begin rapidly carrying the brood, queen, and fellow workers to the new
nest. Scouts that are still tandem-running to other potential sites are
also recruited to the new nest, and the entire colony moves. Thus,
although no single worker may have visited and compared all of the
available options, quorum sensing enables the colony as a whole to
quickly make good decisions about where to move.
Honey bees
Honey bees (Apis mellifera) also use quorum sensing to make decisions about new nest sites. Large colonies reproduce through a process called swarming,
in which the queen leaves the hive with a portion of the workers to
form a new nest elsewhere. After leaving the nest, the workers form a
swarm that hangs from a branch or overhanging structure. This swarm
persists during the decision-making phase until a new nest site is
chosen.
The quorum sensing process in honey bees is similar to the method used by Temnothorax
ants in several ways. A small portion of the workers leave the swarm to
search out new nest sites, and each worker assesses the quality of the
cavity it finds. The worker then returns to the swarm and recruits other
workers to her cavity using the honey bee waggle dance.
However, instead of using a time delay, the number of dance repetitions
the worker performs is dependent on the quality of the site. Workers
that found poor nests stop dancing sooner, and can, therefore, be
recruited to the better sites. Once the visitors to a new site sense
that a quorum number (usually 10–20 bees) has been reached, they return
to the swarm and begin using a new recruitment method called piping.
This vibration signal causes the swarm to take off and fly to the new
nest location. In an experimental test, this decision-making process
enabled honey bee swarms to choose the best nest site in four out of
five trials.
Synthetic biology
Quorum sensing has been engineered using synthetic biological circuits in different systems. Examples include rewiring the AHL components to toxic genes to control population size in bacteria; and constructing an auxin-based system to control population density in mammalian cells. Synthetic quorum sensing circuits have been proposed to enable applications like controlling biofilms or enabling drug delivery.
Computing and robotics
Quorum
sensing can be a useful tool for improving the function of
self-organizing networks such as the SECOAS (Self-Organizing Collegiate
Sensor) environmental monitoring system. In this system, individual
nodes sense that there is a population of other nodes with similar data
to report. The population then nominates just one node to report the
data, resulting in power savings.
Ad-hoc wireless networks can also benefit from quorum sensing, by
allowing the system to detect and respond to network conditions.
Quorum sensing can also be used to coordinate the behavior of autonomous robot swarms. Using a process similar to that used by Temnothorax ants, robots can make rapid group decisions without the direction of a controller.