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Wednesday, December 25, 2019

Taxonomy of wheat

From Wikipedia, the free encyclopedia
https://en.wikipedia.org/wiki/Taxonomy_of_wheat
 
Miracle wheat (Triticum turgidum var. mirabile).
 
During 10,000 years of cultivation, numerous forms of wheat, many of them hybrids, have developed under a combination of artificial and natural selection. This diversity has led to much confusion in the naming of wheats. This article explains how genetic and morphological characteristics of wheat influence its classification, and gives the most common botanical names of wheat in current use. Information on the cultivation and uses of wheat is at the main wheat page. 

Aegilops and Triticum

Spike and spikelets of Aegilops tauschii
 
The genus Triticum includes the wild and domesticated species usually thought of as wheat. 

In the 1950s growing awareness of the genetic similarity of the wild goatgrasses (Aegilops) led botanists such as Bowden to amalgamate Aegilops and Triticum as one genus, Triticum. This approach is still followed by some (mainly geneticists), but has not been widely adopted by taxonomists. Aegilops is morphologically highly distinct from Triticum, with rounded rather than keeled glumes. 

Aegilops is important in wheat evolution because of its role in two important hybridisation events. Wild emmer (T. dicoccoides and T. araraticum) resulted from the hybridisation of a wild wheat, T. urartu, and an as yet unidentified goatgrass, probably closely related to Ae. speltoides. Hexaploid wheats (e.g. T. aestivum and T. spelta) are the result of a hybridisation between a domesticated tetraploid wheat, probably T. dicoccum or T. durum, and another goatgrass, Ae. tauschii (also known as Ae. squarrosa).

Early taxonomy

Botanists of the classical period, such as Columella, and in sixteenth and seventeenth century herbals, divided wheats into two groups, Triticum corresponding to free-threshing wheats, and Zea corresponding to hulled ('spelt') wheats.

Carl Linnaeus recognised five species, all domesticated:
  • T. aestivum Bearded spring wheat
  • T. hybernum Beardless winter wheat
  • T. turgidum Rivet wheat
  • T. spelta Spelt wheat
  • T. monococcum Einkorn wheat
Later classifications added to the number of species described, but continued to give species status to relatively minor variants, such as winter vs. spring forms. The wild wheats were not described until the mid-19th century because of the poor state of botanical exploration in the Near East, where they grow.

The development of a modern classification depended on the discovery, in the 1920s, that wheat was divided into 3 ploidy levels.

Important characters in wheat


Ploidy level

As with many grasses, polyploidy is common in wheat. There are two wild diploid (non-polyploid) wheats, T. boeoticum and T. urartu. T. boeoticum is the wild ancestor of domesticated einkorn, T. monococcum. Cells of the diploid wheats each contain 2 complements of 7 chromosomes, one from the mother and one from the father (2n=2x=14, where 2n is the number of chromosomes in each somatic cell, and x is the basic chromosome number). 

The polyploid wheats are tetraploid (4 sets of chromosomes, 2n=4x=28), or hexaploid (6 sets of chromosomes, 2n=6x=42). The tetraploid wild wheats are wild emmer, T. dicoccoides, and T. araraticum. Wild emmer is the ancestor of all the domesticated tetraploid wheats, with one exception: T. araraticum is the wild ancestor of T. timopheevi.

There are no wild hexaploid wheats, although feral forms of common wheat are sometimes found. Hexaploid wheats developed under domestication. Genetic analysis has shown that the original hexaploid wheats were the result of a cross between a tetraploid domesticated wheat, such as T. dicoccum or T. durum, and a wild goatgrass, Ae. tauschii.

Polyploidy is important to wheat classification for three reasons:
  • Wheats within one ploidy level will be more closely related to each other.
  • Ploidy level influences some plant characteristics. For example, higher levels of ploidy tend to be linked to larger cell size.
  • Polyploidy brings new genomes into a species. For example, Aegilops tauschii brought the D genome into hexaploid wheats, with enhanced cold-hardiness and some distinctive morphological features.

Genome

Observation of chromosome behaviour during meiosis, and the results of hybridisation experiments, have shown that grass genomes (complete complements of genetic matter) can be grouped into distinctive types. Each type has been given a name, e.g. B or D. Grasses sharing the same genome will be more-or-less interfertile, and might be treated by botanists as one species. Identification of genome types is obviously a valuable tool in investigating hybridisation. For example, if two diploid plants hybridise to form a new polyploid form (an allopolyploid), the two original genomes will be present in the new form. Many thousands of years after the original hybridisation event, identification of the component genomes will allow identification of the original parent species.

In Triticum, five genomes, all originally found in diploid species, have been identified:
  • Am – present in wild einkorn (T. boeoticum).
  • A – present in T. urartu (closely related to T. boeoticum but not interfertile).
  • B – present in most tetraploid wheats. Source not identified, but similar to Ae. speltoides.
  • G – present in timopheevi group of wheats. Source not identified, but similar to Ae. speltoides.
  • D – present in Ae. tauschii, and thus in all hexaploid wheats.
The genetic approach to wheat taxonomy (see below) takes the genome composition as defining each species. As there are five known combinations in Triticum this translates into five super species:
  • Am T. monococcum
  • Au T. urartu
  • BAu T. turgidum
  • GAm T. timopheevi
  • BAuD, T. aestivum

Domestication

There are four wild species, all growing in rocky habitats in the fertile crescent of the Near East. All the other species are domesticated. Although relatively few genes control domestication, and wild and domesticated forms are interfertile, wild and domesticated wheats occupy entirely separate habitats. Traditional classification gives more weight to domesticated status.

Hulled vs. Free-threshing

All wild wheats are hulled: they have tough glumes (husks) that tightly enclose the grains. Each package of glumes, lemma and palaea, and grain(s) is known as a spikelet. At maturity the rachis (central stalk of the cereal ear) disarticulates, allowing the spikelets to disperse.

The first domesticated wheats, einkorn and emmer, were hulled like their wild ancestors, but with rachises that (while not entirely tough) did not disarticulate at maturity. During the Pre-Pottery Neolithic B period, at about 8000 BC, free-threshing forms of wheat evolved, with light glumes and fully tough rachis. 

Hulled or free-threshing status is important in traditional classification because the different forms are usually grown separately, and have very different post-harvesting processing. Hulled wheats need substantial extra pounding or milling to remove the tough glumes.

Morphology

In addition to hulled/free-threshing status, other morphological criteria, e.g. spike laxness or glume wingedness, are important in defining wheat forms. Some of these are covered in the individual species accounts linked from this page, but Floras must be consulted for full descriptions and identification keys. 

Traditional vs. genetic classifications

Although the range of recognised types of wheat has been reasonably stable since the 1930s, there are now sharply differing views as to whether these should be recognised at species level (traditional approach) or at subspecific level (genetic approach). The first advocate of the genetic approach was Bowden, in a 1959 classification (now historic rather than current). He, and subsequent proponents (usually geneticists), argued that forms that were interfertile should be treated as one species (the biological species concept). Thus emmer and hard wheat should both be treated as subspecies (or at other infraspecific ranks) of a single tetraploid species defined by the genome BAu. Van Slageren's 1994 classification is probably the most widely used genetic-based classification at present.

Users of traditional classifications give more weight to the separate habitats of the traditional species, which means that species that could hybridise do not, and to morphological characters. There are also pragmatic arguments for this type of classification: it means that most species can be described in Latin binomials, e.g. Triticum aestivum, rather than the trinomials necessary in the genetic system, e.g. Triticum aestivum subsp. aestivum. Both approaches are widely used. 

Infraspecific classification

In the nineteenth century, elaborate schemes of classification were developed in which wheat ears were classified to botanical variety on the basis of morphological criteria such as glume hairiness and colour or grain colour. These variety names are now largely abandoned, but are still sometimes used for distinctive types of wheat such as miracle wheat, a form of T. turgidum with branched ears, known as T. turgidum L. var. mirabile Körn.

The term cultivar (abbreviated as cv.) is often confused with species or domesticate. In fact, it has a precise meaning in botany: it is the term for a distinct population of a crop, usually commercial and resulting from deliberate plant-breeding. Cultivar names are always capitalised, often placed between apostrophes, and not italicised. An example of a cultivar name is T. aestivum cv. 'Pioneer 2163'. A cultivar is often referred to by farmers as a variety, but this is best avoided in print, because of the risk of confusion with botanical varieties. The term landrace is applied to informal, farmer-maintained populations of crop plants. 

Naming

Botanical names for wheat are generally expected to follow an existing classification, such as those listed as current at the Wheat Classification Tables Site. The classifications given in the following table are among those suitable for use. If a genetic classification is favoured, the GRIN classification is comprehensive, based on van Slageren's work but with some extra taxa recognised. If the traditional classification is favoured, Dorofeev's work is a comprehensive scheme that meshes well with other less complete treatments.Wikipedia's wheat pages generally follow a version of the Dorofeev scheme – see the taxobox on the Wheat page. 

A general rule is that different taxonomic schemes should not be mixed in one context. In a given article, book or web page, only one scheme should be used at a time. Otherwise, it will be unclear to others how the botanical name is being used.

Table of wheat species



Wheat taxonomy – two schemes
Common name Genome(s) Genetic (GRIN Taxonomy for Plants ) Traditional (Dorofeev et al. 1979 )
Diploid (2x), Wild, Hulled
Wild einkorn Am Triticum monococcum L. subsp. aegilopoides (Link) Thell. Triticum boeoticum Boiss.

Au Triticum urartu Tumanian ex Gandilyan Triticum urartu Tumanian ex Gandilyan
Diploid (2x), Domesticated, Hulled
Einkorn Am Triticum monococcum L. subsp. monococcum Triticum monococcum L.
Tetraploid (4x), Wild, Hulled
Wild emmer BAu Triticum turgidum L. subsp. dicoccoides (Korn. ex Asch. & Graebn.) Thell. Triticum dicoccoides (Körn. ex Asch. & Graebner) Schweinf.
Tetraploid (4x), Domesticated, Hulled
Emmer BAu Triticum turgidum L. subsp. dicoccum (Schrank ex Schübl.) Thell. Triticum dicoccum Schrank ex Schübler

BAu Triticum ispahanicum Heslot Triticum ispahanicum Heslot

BAu Triticum turgidum L. subsp. paleocolchicum Á. & D. Löve Triticum karamyschevii Nevski
Tetraploid (4x), Domesticated, Free-threshing
Durum or macaroni wheat BAu Triticum turgidum L. subsp. durum (Desf.) Husn. Triticum durum Desf.
Rivet, cone or English wheat BAu Triticum turgidum L. subsp. turgidum Triticum turgidum L.
Polish wheat BAu Triticum turgidum L. subsp. polonicum (L.) Thell. Triticum polonicum L.
Khorasan wheat BAu Triticum turgidum L. subsp. turanicum (Jakubz.) Á. & D. Löve Triticum turanicum Jakubz.
Persian wheat BAu Triticum turgidum L. subsp. carthlicum (Nevski) Á. & D. Löve Triticum carthlicum Nevski in Kom.
Tetraploid (4x) – timopheevi group
Wild, Hulled

GAm Triticum timopheevii (Zhuk.) Zhuk. subsp. armeniacum (Jakubz.) Slageren Triticum araraticum Jakubz.
Domesticated, Hulled

GAm Triticum timopheevii (Zhuk.) Zhuk. subsp. timopheevii Triticum timopheevii (Zhuk.) Zhuk.
Hexaploid (6x), Domesticated, Hulled
Spelt wheat BAuD Triticum aestivum L. subsp. spelta (L.) Thell. Triticum spelta L.

BAuD Triticum aestivum L. subsp. macha (Dekapr. & A. M. Menabde) Mackey Triticum macha Dekapr. & Menabde

BAuD Triticum vavilovii Jakubz. Triticum vavilovii (Tumanian) Jakubz.
Hexaploid (6x), Domesticated, Free-threshing
Common or bread wheat BAuD Triticum aestivum L. subsp. aestivum Triticum aestivum L.
Club wheat BAuD Triticum aestivum L. subsp. compactum (Host) Mackey Triticum compactum Host
Indian dwarf or shot wheat BAuD Triticum aestivum L. subsp. sphaerococcum (Percival) Mackey Triticum sphaerococcum Percival
Note: Blank common name indicates that no common name is in use in the English language. 

Explanatory notes on selected names

  • Triticum boeoticum Boiss. is sometimes divided into two subspecies:
    • T. boeoticum Boiss. subsp. thaoudar (Reut. ex Hausskn.) E. Schiem. – with two grains in each spikelet, distributed to east of fertile crescent.
    • T. boeoticum Boiss. subsp. boeoticum – one grain in each spikelet, in Balkans.
  • Triticum dicoccum Schrank ex Schübler is also known as Triticum dicoccon Schrank.
  • Triticum aethiopicum Jakubz. is a variant form of T. durum found in Ethiopia. It is not usually regarded as a separate species.
  • Triticum karamyschevii Nevsky was previously known as Triticum paleocolchicum A. M. Menabde.

Artificial species and mutants

Russian botanists have given botanical names to hybrids developed during genetical experiments. As these only occur in the laboratory environment, it is questionable whether botanical names (rather than lab. numbers) are justified. Botanical names have also been given to rare mutant forms. Examples include:

Triticeae

 
Triticeae
Hordeum jubatum - close-up (aka).jpg
Scientific classification
Kingdom: Plantae
Clade: Tracheophytes
Clade: Angiosperms
Clade: Monocots
Clade: Commelinids
Order: Poales
Family: Poaceae
Clade: BOP clade
Subfamily: Pooideae
Supertribe: Triticodae
Tribe: Triticeae L.

Triticeae is a botanical tribe within the subfamily Pooideae of grasses that includes genera with many domesticated species. Major crop genera found in this tribe include wheat (see wheat taxonomy), barley, and rye; crops in other genera include some for human consumption, and others used for animal feed or rangeland protection. Among the world's cultivated species, this tribe has some of the most complex genetic histories. An example is bread wheat, which contains the genomes of three species with only one being a wheat Triticum species. Seed storage proteins in the Triticeae are implicated in various food allergies and intolerances.

Genera of Triticeae

Genera recognized in Triticeae according to Robert Soreng et al.:

Cultivated or edible species

4 different commercial forms of Triticeae cultivars. Clockwise from top: wheat gluten flour, European spelt, barley corns, rolled rye
 

Aegilops

  • Various species (rarely identifiable to species in archaeological material) occur in pre-agrarian archaeobotanical remains from Near Eastern sites. Their edible grains were doubtless harvested as wild food resources.
  • speltoides - ancient food grain, putative source of B genome in bread wheat and G genome in T. timopheevii
  • tauschii - Source of D genome in wheat

Amblyopyrum

  • muticum - Source of T genome.

Elymus

Various species are cultivated for pastoral purposes or to protect fallow land from opportunistic or invasive species

Hordeum

Many barley cultivars

Leymus


Secale

Ryes
  • cereale (Cereal Rye) - Livestock feed and sour dough bread - 6 subspecies.
  • cornutum-ergot (Ergot of Spurred Rye) - herbal medicine at very low doses, deadly poisonous as food.
  • strictum - actively cultivated
  • sylvestre - (Tibetan Rye) - actively cultivated in Tibet and China highlands.
  • vavilovii (Armenian Wild Rye) - edible seeds, thickener.

Triticum

Wheat
  • aestivum (bread wheat) - (AABBDD Genome)
    • compactum (club wheat)
    • macha (hulled)
    • spelta (hulled, spelt)
    • sphaerococcum (shot wheat)
  • monococcum (Einkorn wheat) (A Genome)
  • timopheevii (Sanduri wheat)
  • turgidum (poulard wheat) (AABB Genome)

Genetics

Genomes of some Triticeae genera and species

Genera & Species 1st 2nd 3rd

Triticum boeoticum AA


Triticum monococcum AMAM


Triticum urartu AUAU


Aegilops speltoides var. speltoides BB


Aegilops caudata CC


Aegilops tauschii DD


Lophopyrum elongatum EE


Hordeum vulgare HH


Thinopyrum bessarabicum JJ


Aegilops comosa MM


Aegilops uniaristata NN


Henrardia persica OO


Agropyrum cristatum PP


Secale cereale RR


Aegilops bicornis SS


Amblyopyrum muticum TT


Aegilops umbellulata UU


Dasypyrum VV


Psathyrostachys NsNs


Pseudoroegneria StSt


Triticum zhukovskyi AA AMAM GG

Triticum turgidum AA BB

Triticum aestivum AA BB DD

Triticum timopheevii AA GG

Aegilops cylindrica CC DD

Stenostachys sp. HH WW

Elmyus canadensis HH StSt

Elmyus abolinii YY StSt

Thinopyrum Vjd =(V/J/D) JJ StSt VjdVjd

Leymus tricoides NsNsXmXm
Triticeae and its sister tribe Bromeae (bromes or cheat grasses) when joined form a sister clade with Poeae and Aveneae (Oats). Inter-generic gene flow characterized these taxa from the early stages. For example, Poeae and Aveneae share a genetic marker with barley and 10 other members of Triticeae, whereas all 19 genera of Triticeae bear a wheat marker along with Bromeae. Genera within Triticeae contain diploid, allotetraploid and/or allohexaploid genomes, the capacity to form allopolyploid genomes varies within the tribe. In this tribe, the majority of diploid species tested are closely related to Aegilops, the more distal members (earliest branch points) include Hordeum (Barley), Eremian, Psathyrostachys. The broad distribution of cultivars within the Tribe and the properties of the proteins have implication in the treatment of certain digestive diseases and autoimmune disorders.

Evolution of the tribe

One of the earliest branches in Triticeae, to Pseudoroegeneria, produces the genome StSt and another Hordeum then genome = HH. Allotetraploid combinations of Pseudoroegeneria and Hordeum and are seen in Elmyus (HHStSt), but also shows introgression from Australian and Agropyron wheatgrasses. Elymus contains mostly Pseudoroegeneria mtDNA.

Many genera and species of Triticeae are allopolyploids, having more chromosomes than seen in typical diploids. Typical allopolyploids are tetraploid or hexaploid, XXYY or XXYYZZ. The creation of polyploid species results from natural random events tolerated by polyploid-capable plants. Natural allopolyploid plants may have selective advantages and some may permit the recombination of distantly related genetic material. Poulard wheat is an example of a stable allotetraploid wheat. 

The Secale (domesticated rye) may be a very early branch from the goat grass clad (or goat grasses are a branch of early rye grasses), as branch these are almost contemporary with the branching between monoploid wheat and Aegilops tauschii. Studies in Anatolia now suggest Rye (Secale) was cultivated, but not domesticated, prior to the holocene and to evidence for the cultivation of wheat. As climate changed the favorablitiy of Secale declined. At that time other strains of barley and wheat may have been cultivated, but humans did little to change them. 

Goat grasses and the evolution of bread wheat

Evolution of Bread Wheat

Tetraploidization in wild emmer wheat

Aegilops appears to be basal to several taxa such as Triticum, Amblyopyrum, and Crithopsis. Certain species such as Aegilops speltoides could potentially represent core variants of the taxa. The generic placement may be more a matter of nomenclature. Genera Aegilops and Triticum are very closely related; as the adjacent image illustrates, the Aegilops species occupy most of the basal branch points in bread wheat evolution indicating that genus Triticum evolved from Aegilops after an estimated 4 million years ago. The divergence of the genomes is followed by allotetraploidization of a speltoid goatgrass x basal wheat species Triticum boeoticum with strains in the middle eastern region giving rise to cultivated emmer wheat.

Hexaploidization of tetraploid wheat

Hybridization of tetraploid wheat with Ae. tauschii produced a hulled wheat similar to spelt, suggesting T. spelta is basal. The tauschii species can be subdivided into subspecies tauschii (eastern Turkey to China or Pakistan) and strangulata (Caucasus to S. Caspian, N. Iran). The D genome of bread wheat is closer to A.t. strangulata than A.t. tauschii. It is suggested that Ae. tauschii underwent rapid selective evolution prior to combining with tetraploid wheat. 

Wild Triticeae use by humans

Intense use of wild Triticeae can be seen in the Levant as early as 23,000 years ago. This site, Ohala II (Israel), also shows that Triticeae grains were processed and cooked. Many cultivars appear to have been domesticated in the region of the upper Fertile Crescent, Levant and central Anatolia. More recent evidence suggests that cultivation of wheat from emmer's wheat required a longer period with wild seeding maintaining a presence in archaeological finds.

Pastoral grasses

Triticeae has a pastoral component that some contend goes back to the Neolithic period and is referred to as the Garden Hunting Hypothesis. In this hypothesis grains could be planted or shared for the purpose of attracting game animals so that they could be hunted close to settlements. 

Today, rye and other Triticeae cultivars are used to graze animals, particularly cattle. Rye grasses in the New World have been used selectively as fodder, but also to protect grasslands without the introduction of invasive Old World species.

Triticeae and health

Glutens (storage proteins) in the Triticeae tribe have been linked to gluten-sensitive diseases. While it was once believed that oats carried similar potentials, recent studies indicate that most oat sensitivity is the result of contamination. Triticeae glutens studies are important in determining the links between gluten and gastrointestinal, allergic, and autoimmune diseases. Some of the recently discovered biochemical and immunochemical properties of these proteins suggest they evolved for protection against dedicated or continuous consumption by mammalian seed-eaters. One recent publication even raises doubts about wheat's safety for anyone to eat. Overlapping properties with regard to food preparation have made these proteins much more useful as cereal cultivars, and a balanced perspective suggests a variable tolerance to Triticeae glutens reflects early childhood environment and genetic predisposition.

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