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Friday, October 27, 2023

Tetrapod

From Wikipedia, the free encyclopedia
 
Tetrapods
Temporal range:
Tournaisian - Present Four-limbed vertebrates (tetrapods sensu lato) originated in the Eifelian stage of the Middle Devonian
a collage of six images of tetrapod animals. clockwise from top left: Mercurana myristicapaulstris, a shrub frog; Dermophis mexicanus, a legless amphibian looking like a naked snake; Equus quagga, a plains zebra; Sterna maxima, a tern (seabird); Pseudotrapelus sinaitus, a Sinai agama; Tachyglossus aculeatus, a spiny anteater
Clockwise from top left: Mercurana myristicapaulstris, a shrub frog; Dermophis mexicanus, a legless amphibian; Equus quagga, a plains zebra; Sterna maxima, a tern (seabird); Pseudotrapelus sinaitus, a Sinai agama; Tachyglossus aculeatus, a short-beaked echidna
Scientific classification Edit this classification
Domain: Eukaryota
Kingdom: Animalia
Phylum: Chordata
Infraphylum: Gnathostomata
Clade: Eugnathostomata
Clade: Teleostomi
Superclass: Tetrapoda
Hatschek & Cori, 1896
[Laurin]
Subgroups

Tetrapods (/ˈtɛtrəˌpɒdz/; from Ancient Greek τετρα- (tetra-) 'four', and πούς (poús) 'foot') are four-limbed vertebrate animals constituting the superclass Tetrapoda (/tɛˈtræpədə/). It includes all extant and extinct amphibians, and the amniotes which in turn evolved into the sauropsids (reptiles, including dinosaurs and therefore birds) and synapsids (extinct pelycosaurs, therapsids and all extant mammals). Some tetrapods such as snakes, legless lizards and caecilians had evolved to become limbless via mutations of the Hox gene, although some do still have a pair of vestigial spurs that are remnants of the hindlimbs.

Tetrapods evolved from a clade of primitive semiaquatic animals known as the Tetrapodomorpha which, in turn, evolved from ancient lobe-finned fish (sarcopterygians) around 390 million years ago in the Middle Devonian period; their forms were transitional between lobe-finned fishes and true four-limbed tetrapods. Limbed vertebrates (tetrapods in the broad sense of the word) are first known from Middle Devonian trackways, and body fossils became common near the end of the Late Devonian but these were all aquatic. The first crown-tetrapods (last common ancestors of extant tetrapods capable of terrestrial locomotion) appeared by the very early Carboniferous, 350 million years ago.

The specific aquatic ancestors of the tetrapods and the process by which they colonized Earth's land after emerging from water remains unclear. The transition from a body plan for gill-based aquatic respiration and tail-propelled locomotion to one that enables the animal to survive out of water and move around on land is one of the most profound evolutionary changes known. Tetrapods have numerous anatomical and physiological features that are distinct from their aquatic fish ancestors. These include distinct head and neck structures for feeding and movements, appendicular skeletons (shoulder and pelvic girdles in particular) for weight bearing and locomotion, more versatile eyes for seeing, middle ears for hearing, and more efficient heart and lungs for oxygen circulation and exchange outside water.

The first tetrapods (stem) or "fishapods" were primarily aquatic. Modern amphibians, which evolved from earlier groups, are generally semiaquatic; the first stages of their lives are as waterborne eggs and fish-like larvae known as tadpoles, and later undergo metamorphosis to grow limbs and become partly terrestrial and partly aquatic. However, most tetrapod species today are amniotes, most of which are terrestrial tetrapods whose branch evolved from earlier tetrapods early in the Late Carboniferous. The key innovation in amniotes over amphibians is the amnion, which enables the eggs to retain their aqueous contents on land, rather than needing to stay in water. (Some amniotes later evolved internal fertilization, although many aquatic species outside the tetrapod tree had evolved such before the tetrapods appeared, e.g. Materpiscis.) Some tetrapods, such as snakes and caecilians, have lost some or all of their limbs through further speciation and evolution; some have only concealed vestigial bones as a remnant of the limbs of their distant ancestors. Others returned to being amphibious or otherwise living partially or fully aquatic lives, the first during the Carboniferous period, others as recently as the Cenozoic.

One group of amniotes diverged into the reptiles, which includes lepidosaurs, dinosaurs (which includes birds), crocodilians, turtles, and extinct relatives; while another group of amniotes diverged into the mammals and their extinct relatives. Amniotes include the tetrapods that further evolved for flight—such as birds from among the dinosaurs, pterosaurs from the archosaurs, and bats from among the mammals.

Definitions

The precise definition of "tetrapod" is a subject of strong debate among paleontologists who work with the earliest members of the group.

Apomorphy-based definitions

A majority of paleontologists use the term "tetrapod" to refer to all vertebrates with four limbs and distinct digits (fingers and toes), as well as legless vertebrates with limbed ancestors. Limbs and digits are major apomorphies (newly evolved traits) which define tetrapods, though they are far from the only skeletal or biological innovations inherent to the group. The first vertebrates with limbs and digits evolved in the Devonian, including the Late Devonian-age Ichthyostega and Acanthostega, as well as the trackmakers of the Middle Devonian-age Zachelmie trackways.

Defining tetrapods based on one or two apomorphies can present a problem if these apomorphies were acquired by more than one lineage through convergent evolution. To resolve this potential concern, the apomorphy-based definition is often supported by an equivalent cladistic definition. Cladistics is a modern branch of taxonomy which classifies organisms through evolutionary relationships, as reconstructed by phylogenetic analyses. A cladistic definition would define a group based on how closely related its constituents are. Tetrapoda is widely considered a monophyletic clade, a group with all of its component taxa sharing a single common ancestor. In this sense, Tetrapoda can also be defined as the "clade of limbed vertebrates", including all vertebrates descended from the first limbed vertebrates.

Crown group tetrapods

A simplified cladogram demonstrating differing definitions of Tetrapoda:
* Under the apomorphy-based definition used by many paleontologists, tetrapods originate at the orange star ("First vertebrates with tetrapod limb")
* When restricted to the crown group, tetrapods originate at the blue arrow ("Last common ancestor of recent tetrapods")

A portion of tetrapod workers, led by French paleontologist Michel Laurin, prefer to restrict the definition of tetrapod to the crown group. A crown group is a subset of a category of animal defined by the most recent common ancestor of living representatives. This cladistic approach defines "tetrapods" as the nearest common ancestor of all living amphibians (the lissamphibians) and all living amniotes (reptiles, birds, and mammals), along with all of the descendants of that ancestor. In effect, "tetrapod" is a name reserved solely for animals which lie among living tetrapods, so-called crown tetrapods. This is a node-based clade, a group with a common ancestry descended from a single "node" (the node being the nearest common ancestor of living species).

Defining tetrapods based on the crown group would exclude many four-limbed vertebrates which would otherwise be defined as tetrapods. Devonian "tetrapods", such as Ichthyostega and Acanthostega, certainly evolved prior to the split between lissamphibians and amniotes, and thus lie outside the crown group. They would instead lie along the stem group, a subset of animals related to, but not within, the crown group. The stem and crown group together are combined into the total group, given the name Tetrapodomorpha, which refers to all animals closer to living tetrapods than to Dipnoi (lungfishes), the next closest group of living animals. Many early tetrapodomorphs are clearly fish in ecology and anatomy, but later tetrapodomorphs are much more similar to tetrapods in many regards, such as the presence of limbs and digits.

Laurin's approach to the definition of tetrapods is rooted in the belief that the term has more relevance for neontologists (zoologists specializing in living animals) than paleontologists (who primarily use the apomorphy-based definition). In 1998, he re-established the defunct historical term Stegocephali to replace the apomorphy-based definition of tetrapod used by many authors. Other paleontologists use the term stem-tetrapod to refer to those tetrapod-like vertebrates that are not members of the crown group, including both early limbed "tetrapods" and tetrapodomorph fishes. The term "fishapod" was popularized after the discovery and 2006 publication of Tiktaalik, an advanced tetrapodomorph fish which was closely related to limbed vertebrates and showed many apparently transitional traits.

The two subclades of crown tetrapods are Batrachomorpha and Reptiliomorpha. Batrachomorphs are all animals sharing a more recent common ancestry with living amphibians than with living amniotes (reptiles, birds, and mammals). Reptiliomorphs are all animals sharing a more recent common ancestry with living amniotes than with living amphibians. Gaffney (1979) provided the name Neotetrapoda to the crown group of tetrapods, though few subsequent authors followed this proposal.

Biodiversity

Tetrapoda includes three living classes: amphibians, reptiles, and mammals. Overall, the biodiversity of lissamphibians, as well as of tetrapods generally, has grown exponentially over time; the more than 30,000 species living today are descended from a single amphibian group in the Early to Middle Devonian. However, that diversification process was interrupted at least a few times by major biological crises, such as the Permian–Triassic extinction event, which at least affected amniotes. The overall composition of biodiversity was driven primarily by amphibians in the Palaeozoic, dominated by reptiles in the Mesozoic and expanded by the explosive growth of birds and mammals in the Cenozoic. As biodiversity has grown, so has the number of species and the number of niches that tetrapods have occupied. The first tetrapods were aquatic and fed primarily on fish. Today, the Earth supports a great diversity of tetrapods that live in many habitats and subsist on a variety of diets. The following table shows summary estimates for each tetrapod class from the IUCN Red List of Threatened Species, 2014.3, for the number of extant species that have been described in the literature, as well as the number of threatened species.

IUCN global summary estimates for extant tetrapod species as of 2014
Tetrapod group Image Class Estimated number of
described species
Threatened species
in Red List
Share of species
scientifically
described
Best estimate
of percent of
threatened species
Anamniotes
lay eggs in water
Amphibians 7,302 1,957 88% 41%
Amniotes
adapted to lay eggs
on land
Sauropsids
(Birds and other Reptiles)
20,463 2,300 75% 13%
Synapsids
(Mammals)
5,513 1,199 100% 26%
Overall 33,278 5,456 80% ?

Classification

Carl Linnaeus’s 1735 classification of animals, with tetrapods occupying the first three classes

The classification of tetrapods has a long history. Traditionally, tetrapods are divided into four classes based on gross anatomical and physiological traits. Snakes and other legless reptiles are considered tetrapods because they are sufficiently like other reptiles that have a full complement of limbs. Similar considerations apply to caecilians and aquatic mammals. Newer taxonomy is frequently based on cladistics instead, giving a variable number of major "branches" (clades) of the tetrapod family tree.

As is the case throughout evolutionary biology today, there is debate over how to properly classify the groups within Tetrapoda. Traditional biological classification sometimes fails to recognize evolutionary transitions between older groups and descendant groups with markedly different characteristics. For example, the birds, which evolved from the dinosaurs, are defined as a separate group from them, because they represent a distinct new type of physical form and functionality. In phylogenetic nomenclature, in contrast, the newer group is always included in the old. For this school of taxonomy, dinosaurs and birds are not groups in contrast to each other, but rather birds are a sub-type of dinosaurs.

History of classification

The tetrapods, including all large- and medium-sized land animals, have been among the best understood animals since earliest times. By Aristotle's time, the basic division between mammals, birds and egg-laying tetrapods (the "herptiles") was well known, and the inclusion of the legless snakes into this group was likewise recognized. With the birth of modern biological classification in the 18th century, Linnaeus used the same division, with the tetrapods occupying the first three of his six classes of animals. While reptiles and amphibians can be quite similar externally, the French zoologist Pierre André Latreille recognized the large physiological differences at the beginning of the 19th century and split the herptiles into two classes, giving the four familiar classes of tetrapods: amphibians, reptiles, birds and mammals.

Modern classification

With the basic classification of tetrapods settled, a half a century followed where the classification of living and fossil groups was predominantly done by experts working within classes. In the early 1930s, American vertebrate palaeontologist Alfred Romer (1894–1973) produced an overview, drawing together taxonomic work from the various subfields to create an orderly taxonomy in his Vertebrate Paleontology. This classical scheme with minor variations is still used in works where systematic overview is essential, e.g. Benton (1998) and Knobill and Neill (2006). While mostly seen in general works, it is also still used in some specialist works like Fortuny et al. (2011). The taxonomy down to subclass level shown here is from Hildebrand and Goslow (2001):

  • Superclass Tetrapoda – four-limbed vertebrates
    • Class Amphibia – amphibians
      • Subclass Ichthyostegalia – early fish-like amphibians (paraphyletic group outside leading to the crown-clade Neotetrapoda)
      • Subclass Anthracosauria – reptile-like amphibians (often thought to be the ancestors of the amniotes)
      • Subclass Temnospondyli – large-headed Paleozoic and Mesozoic amphibians
      • Subclass Lissamphibia – modern amphibians
    • Class Reptilia – reptiles
      • Subclass Diapsida – diapsids, including crocodiles, dinosaurs, birds, lizards, snakes and turtles
      • Subclass Euryapsida – euryapsids
      • Subclass Synapsida – synapsids, including mammal-like reptiles-now a separate group (often thought to be the ancestors of mammals)
      • Subclass Anapsida – anapsids
    • Class Mammalia – mammals
      • Subclass Prototheria – egg-laying mammals, including monotremes
      • Subclass Allotheria – multituberculates
      • Subclass Theria – live-bearing mammals, including marsupials and placentals

This classification is the one most commonly encountered in school textbooks and popular works. While orderly and easy to use, it has come under critique from cladistics. The earliest tetrapods are grouped under class Amphibia, although several of the groups are more closely related to amniotes than to modern day amphibians. Traditionally, birds are not considered a type of reptile, but crocodiles are more closely related to birds than they are to other reptiles, such as lizards. Birds themselves are thought to be descendants of theropod dinosaurs. Basal non-mammalian synapsids ("mammal-like reptiles") traditionally also sort under class Reptilia as a separate subclass, but they are more closely related to mammals than to living reptiles. Considerations like these have led some authors to argue for a new classification based purely on phylogeny, disregarding the anatomy and physiology.

Evolution

Devonian fishes, including an early shark Cladoselache, Eusthenopteron and other lobe-finned fishes, and the placoderm Bothriolepis (Joseph Smit, 1905).
Fossil of Tiktaalik

Ancestry

Tetrapods evolved from early bony fishes (Osteichthyes), specifically from the tetrapodomorph branch of lobe-finned fishes (Sarcopterygii), living in the early to middle Devonian period.

Eusthenopteron, ≈385 Ma
Tiktaalik, ≈375 Ma
Acanthostega, ≈365 Ma

The first tetrapods probably evolved in the Emsian stage of the Early Devonian from Tetrapodomorph fish living in shallow water environments. The very earliest tetrapods would have been animals similar to Acanthostega, with legs and lungs as well as gills, but still primarily aquatic and unsuited to life on land.

The earliest tetrapods inhabited saltwater, brackish-water, and freshwater environments, as well as environments of highly variable salinity. These traits were shared with many early lobed-finned fishes. As early tetrapods are found on two Devonian continents, Laurussia (Euramerica) and Gondwana, as well as the island of North China, it is widely supposed that early tetrapods were capable of swimming across the shallow (and relatively narrow) continental-shelf seas that separated these landmasses.

Since the early 20th century, several families of tetrapodomorph fishes have been proposed as the nearest relatives of tetrapods, among them the rhizodonts (notably Sauripterus), the osteolepidids, the tristichopterids (notably Eusthenopteron), and more recently the elpistostegalians (also known as Panderichthyida) notably the genus Tiktaalik.

A notable feature of Tiktaalik is the absence of bones covering the gills. These bones would otherwise connect the shoulder girdle with skull, making the shoulder girdle part of the skull. With the loss of the gill-covering bones, the shoulder girdle is separated from the skull, connected to the torso by muscle and other soft-tissue connections. The result is the appearance of the neck. This feature appears only in tetrapods and Tiktaalik, not other tetrapodomorph fishes. Tiktaalik also had a pattern of bones in the skull roof (upper half of the skull) that is similar to the end-Devonian tetrapod Ichthyostega. The two also shared a semi-rigid ribcage of overlapping ribs, which may have substituted for a rigid spine. In conjunction with robust forelimbs and shoulder girdle, both Tiktaalik and Ichthyostega may have had the ability to locomote on land in the manner of a seal, with the forward portion of the torso elevated, the hind part dragging behind. Finally, Tiktaalik fin bones are somewhat similar to the limb bones of tetrapods.

However, there are issues with positing Tiktaalik as a tetrapod ancestor. For example, it had a long spine with far more vertebrae than any known tetrapod or other tetrapodomorph fish. Also the oldest tetrapod trace fossils (tracks and trackways) predate it by a considerable margin. Several hypotheses have been proposed to explain this date discrepancy: 1) The nearest common ancestor of tetrapods and Tiktaalik dates to the Early Devonian. By this hypothesis, the lineage is the closest to tetrapods, but Tiktaalik itself was a late-surviving relic. 2) Tiktaalik represents a case of parallel evolution. 3) Tetrapods evolved more than once.

Euteleostomi / Osteichthyes
Actinopterygii

(ray‑finned fishes)
Sarcopterygii
Actinistia

Coelacanthiformes (coelacanths)


Rhipidistia
Dipnomorpha

Dipnoi (lungfish)


Tetrapodomorpha

†Tetrapodomorph fishes



Tetrapoda




(fleshy‑limbed vertebrates)
(bony vertebrates)

History

The oldest evidence for the existence of tetrapods comes from trace fossils: tracks (footprints) and trackways found in Zachełmie, Poland, dated to the Eifelian stage of the Middle Devonian, 390 million years ago, although these traces have also been interpreted as the ichnogenus Piscichnus (fish nests/feeding traces). The adult tetrapods had an estimated length of 2.5 m (8 feet), and lived in a lagoon with an average depth of 1–2 m, although it is not known at what depth the underwater tracks were made. The lagoon was inhabited by a variety of marine organisms and was apparently salt water. The average water temperature was 30 degrees C (86 F). The second oldest evidence for tetrapods, also tracks and trackways, date from ca. 385 Mya (Valentia Island, Ireland).

The oldest partial fossils of tetrapods date from the Frasnian beginning ≈380 mya. These include Elginerpeton and Obruchevichthys. Some paleontologists dispute their status as true (digit-bearing) tetrapods.

All known forms of Frasnian tetrapods became extinct in the Late Devonian extinction, also known as the end-Frasnian extinction. This marked the beginning of a gap in the tetrapod fossil record known as the Famennian gap, occupying roughly the first half of the Famennian stage.

The oldest near-complete tetrapod fossils, Acanthostega and Ichthyostega, date from the second half of the Fammennian. Although both were essentially four-footed fish, Ichthyostega is the earliest known tetrapod that may have had the ability to pull itself onto land and drag itself forward with its forelimbs. There is no evidence that it did so, only that it may have been anatomically capable of doing so.

The publication in 2018 of Tutusius umlambo and Umzantsia amazana from high latitude Gondwana setting indicate that the tetrapods enjoyed a global distribution by the end of the Devonian and even extend into the high latitudes.

The end-Fammenian marked another extinction, known as the end-Fammenian extinction or the Hangenberg event, which is followed by another gap in the tetrapod fossil record, Romer's gap, also known as the Tournaisian gap. This gap, which was initially 30 million years, but has been gradually reduced over time, currently occupies much of the 13.9-million year Tournaisian, the first stage of the Carboniferous period.

Palaeozoic

Devonian stem-tetrapods

Ichthyostega, 374–359 Ma

Tetrapod-like vertebrates first appeared in the early Devonian period. These early "stem-tetrapods" would have been animals similar to Ichthyostega, with legs and lungs as well as gills, but still primarily aquatic and unsuited to life on land. The Devonian stem-tetrapods went through two major bottlenecks during the Late Devonian extinctions, also known as the end-Frasnian and end-Fammenian extinctions. These extinction events led to the disappearance of stem-tetrapods with fish-like features. When stem-tetrapods reappear in the fossil record in early Carboniferous deposits, some 10 million years later, the adult forms of some are somewhat adapted to a terrestrial existence. Why they went to land in the first place is still debated.

Carboniferous

Edops, 323–299 Ma

During the early Carboniferous, the number of digits on hands and feet of stem-tetrapods became standardized at no more than five, as lineages with more digits died out (exceptions within crown-group tetrapods arose among some secondarily aquatic members). By mid-Carboniferous times, the stem-tetrapods had radiated into two branches of true ("crown group") tetrapods. Modern amphibians are derived from either the temnospondyls or the lepospondyls (or possibly both), whereas the anthracosaurs were the relatives and ancestors of the amniotes (reptiles, mammals, and kin). The first amniotes are known from the early part of the Late Carboniferous. All basal amniotes, like basal batrachomorphs and reptiliomorphs, had a small body size. Amphibians must return to water to lay eggs; in contrast, amniote eggs have a membrane ensuring gas exchange out of water and can therefore be laid on land.

Amphibians and amniotes were affected by the Carboniferous rainforest collapse (CRC), an extinction event that occurred ≈300 million years ago. The sudden collapse of a vital ecosystem shifted the diversity and abundance of major groups. Amniotes were more suited to the new conditions. They invaded new ecological niches and began diversifying their diets to include plants and other tetrapods, previously having been limited to insects and fish.

Permian

Diadectes, 290–272 Ma

In the Permian period, in addition to temnospondyl and anthracosaur clades, there were two important clades of amniote tetrapods, the sauropsids and the synapsids. The latter were the most important and successful Permian animals.

The end of the Permian saw a major turnover in fauna during the Permian–Triassic extinction event. There was a protracted loss of species, due to multiple extinction pulses. Many of the once large and diverse groups died out or were greatly reduced.

Mesozoic

The diapsids (a subgroup of the sauropsids) began to diversify during the Triassic, giving rise to the turtles, crocodiles, and dinosaurs and lepidosaurs. In the Jurassic, lizards developed from some lepidosaurs. In the Cretaceous, snakes developed from lizards and modern birds branched from a group of theropod dinosaurs. By the late Mesozoic, the groups of large, primitive tetrapod that first appeared during the Paleozoic such as temnospondyls and amniote-like tetrapods had gone extinct. Many groups of synapsids, such as anomodonts and therocephalians, that once comprised the dominant terrestrial fauna of the Permian, also became extinct during the Mesozoic; however, during the Jurassic, one synapsid group (Cynodontia) gave rise to the modern mammals, which survived through the Mesozoic to later diversify during the Cenozoic. Also, the Cretaceous-Paleogene extinction event killed off many organisms, including all the dinosaurs.Birds survived too,to later diversified during the Cenozoic.

Cenozoic

Following the great faunal turnover at the end of the Mesozoic, representatives of seven major groups of tetrapods persisted into the Cenozoic era. One of them, the Choristodera, became extinct 11 million years ago for unknown reasons. The surviving six, including the extinct one are:

Cladistics

Stem group

Stem tetrapods are all animals more closely related to tetrapods than to lungfish, but excluding the tetrapod crown group. The cladogram below illustrates the relationships of stem-tetrapods. All these lineages are extinct except for Dipnomorpha and Tetrapoda; from Swartz, 2012:

Rhipidistia

Dipnomorpha (lungfishes and relatives)


Tetrapodomorpha 

Kenichthys




Rhizodontidae



Canowindridae

Marsdenichthys




Canowindra




Koharalepis



Beelarongia






Megalichthyiformes

Gogonasus




Gyroptychius




Osteolepis




Medoevia



Megalichthyidae






Eotetrapodiformes
Tristichopteridae

Spodichthys




Tristichopterus




Eusthenopteron




Jarvikina




Cabbonichthys




Mandageria



Eusthenodon










Tinirau




Platycephalichthys


Elpistostegalia

Panderichthys


Stegocephalia


Tiktaalik



Elpistostege





Elginerpeton




Ventastega




Acanthostega




Ichthyostega




Whatcheeriidae




Colosteidae




Crassigyrinus




Baphetidae



Tetrapoda




















Crown group

Crown tetrapods are defined as the nearest common ancestor of all living tetrapods (amphibians, reptiles, birds, and mammals) along with all of the descendants of that ancestor.

The inclusion of certain extinct groups in the crown Tetrapoda depends on the relationships of modern amphibians, or lissamphibians. There are currently three major hypotheses on the origins of lissamphibians. In the temnospondyl hypothesis (TH), lissamphibians are most closely related to dissorophoid temnospondyls, which would make temnospondyls tetrapods. In the lepospondyl hypothesis (LH), lissamphibians are the sister taxon of lysorophian lepospondyls, making lepospondyls tetrapods and temnospondyls stem-tetrapods. In the polyphyletic hypothesis (PH), frogs and salamanders evolved from dissorophoid temnospondyls while caecilians come out of microsaur lepospondyls, making both lepospondyls and temnospondyls true tetrapods.

Modern Amphibian Origins

Temnospondyl hypothesis (TH)

This hypothesis comes in a number of variants, most of which have lissamphibians coming out of the dissorophoid temnospondyls, usually with the focus on amphibamids and branchiosaurids.

The Temnospondyl Hypothesis is the currently favored or majority view, supported by Ruta et al (2003a,b), Ruta and Coates (2007), Coates et al (2008), Sigurdsen and Green (2011), and Schoch (2013, 2014).

Cladogram modified after Coates, Ruta and Friedman (2008).

Crown-group Tetrapoda 

Temnospondyli
Crown group Lissamphibia 

total group Lissamphibia


 




Embolomeri 




Gephyrostegidae 




Seymouriamorpha 





Diadectomorpha 



Crown-group Amniota 





Microsauria 




Lysorophia 




Adelospondyli




Nectridea 



Aistopoda









total group Amniota


Lepospondyl hypothesis (LH)

Cladogram modified after Laurin, How Vertebrates Left the Water (2010).

  Stegocephalia  



Acanthostega







Ichthyostega







Temnospondyli





Embolomeri




Seymouriamorpha



 



  Reptiliomorpha  

  Amniota    



Diadectomorpha




 


  Amphibia  


Aistopoda  



Adelogyrinidae  






Nectridea





Lysorophia




  Lissamphibia        











("Tetrapoda")

Polyphyly hypothesis (PH)

This hypothesis has batrachians (frogs and salamander) coming out of dissorophoid temnospondyls, with caecilians out of microsaur lepospondyls. There are two variants, one developed by Carroll, the other by Anderson.

Cladogram modified after Schoch, Frobisch, (2009).

  Tetrapoda  

  stem tetrapods  




  Temnospondyli  

  basal temnospondyls  


  Dissorophoidea  


Amphibamidae  



  Frogs





Branchiosauridae



  Salamanders






  Lepospondyli  

Lysorophia




  Caecilians



Microsauria









Seymouriamorpha




Diadectomorpha



  Amniota







Anatomy and physiology

The tetrapod's ancestral fish, tetrapodomorph, possessed similar traits to those inherited by the early tetrapods, including internal nostrils and a large fleshy fin built on bones that could give rise to the tetrapod limb. To propagate in the terrestrial environment, animals had to overcome certain challenges. Their bodies needed additional support, because buoyancy was no longer a factor. Water retention was now important, since it was no longer the living matrix, and could be lost easily to the environment. Finally, animals needed new sensory input systems to have any ability to function reasonably on land.

Skull

The brain only filled half of the skull in the early tetrapods. The rest was filled with fatty tissue or fluid, which gave the brain space for growth as they adapted to a life on land. Their palatal and jaw structures of tetramorphs were similar to those of early tetrapods, and their dentition was similar too, with labyrinthine teeth fitting in a pit-and-tooth arrangement on the palate. A major difference between early tetrapodomorph fishes and early tetrapods was in the relative development of the front and back skull portions; the snout is much less developed than in most early tetrapods and the post-orbital skull is exceptionally longer than an amphibian's. A notable characteristic that make a tetrapod's skull different from a fish's are the relative frontal and rear portion lengths. The fish had a long rear portion while the front was short; the orbital vacuities were thus located towards the anterior end. In the tetrapod, the front of the skull lengthened, positioning the orbits farther back on the skull.

Neck

In tetrapodomorph fishes such as Eusthenopteron, the part of the body that would later become the neck was covered by a number of gill-covering bones known as the opercular series. These bones functioned as part of pump mechanism for forcing water through the mouth and past the gills. When the mouth opened to take in water, the gill flaps closed (including the gill-covering bones), thus ensuring that water entered only through the mouth. When the mouth closed, the gill flaps opened and water was forced through the gills.

In Acanthostega, a basal tetrapod, the gill-covering bones have disappeared, although the underlying gill arches are still present. Besides the opercular series, Acanthostega also lost the throat-covering bones (gular series). The opercular series and gular series combined are sometimes known as the operculo-gular or operculogular series. Other bones in the neck region lost in Acanthostega (and later tetrapods) include the extrascapular series and the supracleithral series. Both sets of bones connect the shoulder girdle to the skull. With the loss of these bones, tetrapods acquired a neck, allowing the head to rotate somewhat independently of the torso. This, in turn, required stronger soft-tissue connections between head and torso, including muscles and ligaments connecting the skull with the spine and shoulder girdle. Bones and groups of bones were also consolidated and strengthened.

In Carboniferous tetrapods, the neck joint (occiput) provided a pivot point for the spine against the back of the skull. In tetrapodomorph fishes such as Eusthenopteron, no such neck joint existed. Instead, the notochord (a rod made of proto-cartilage) entered a hole in the back of the braincase and continued to the middle of the braincase. Acanthostega had the same arrangement as Eusthenopteron, and thus no neck joint. The neck joint evolved independently in different lineages of early tetrapods.

All tetrapods appear to hold their necks at the maximum possible vertical extension when in a normal, alert posture.

Dentition

Cross-section of a labyrinthodont tooth

Tetrapods had a tooth structure known as "plicidentine" characterized by infolding of the enamel as seen in cross-section. The more extreme version found in early tetrapods is known as "labyrinthodont" or "labyrinthodont plicidentine". This type of tooth structure has evolved independently in several types of bony fishes, both ray-finned and lobe finned, some modern lizards, and in a number of tetrapodomorph fishes. The infolding appears to evolve when a fang or large tooth grows in a small jaw, erupting when it is still weak and immature. The infolding provides added strength to the young tooth, but offers little advantage when the tooth is mature. Such teeth are associated with feeding on soft prey in juveniles.

Axial skeleton

With the move from water to land, the spine had to resist the bending caused by body weight and had to provide mobility where needed. Previously, it could bend along its entire length. Likewise, the paired appendages had not been formerly connected to the spine, but the slowly strengthening limbs now transmitted their support to the axis of the body.

Girdles

The shoulder girdle was disconnected from the skull, resulting in improved terrestrial locomotion. The early sarcopterygians' cleithrum was retained as the clavicle, and the interclavicle was well-developed, lying on the underside of the chest. In primitive forms, the two clavicles and the interclavical could have grown ventrally in such a way as to form a broad chest plate. The upper portion of the girdle had a flat, scapular blade (shoulder bone), with the glenoid cavity situated below performing as the articulation surface for the humerus, while ventrally there was a large, flat coracoid plate turning in toward the midline.

The pelvic girdle also was much larger than the simple plate found in fishes, accommodating more muscles. It extended far dorsally and was joined to the backbone by one or more specialized sacral ribs. The hind legs were somewhat specialized in that they not only supported weight, but also provided propulsion. The dorsal extension of the pelvis was the ilium, while the broad ventral plate was composed of the pubis in front and the ischium in behind. The three bones met at a single point in the center of the pelvic triangle called the acetabulum, providing a surface of articulation for the femur.

Limbs

Fleshy lobe-fins supported on bones seem to have been an ancestral trait of all bony fishes (Osteichthyes). The ancestors of the ray-finned fishes (Actinopterygii) evolved their fins in a different direction. The Tetrapodomorph ancestors of the Tetrapods further developed their lobe fins. The paired fins had bones distinctly homologous to the humerus, ulna, and radius in the fore-fins and to the femur, tibia, and fibula in the pelvic fins.

The paired fins of the early sarcopterygians were smaller than tetrapod limbs, but the skeletal structure was very similar in that the early sarcopterygians had a single proximal bone (analogous to the humerus or femur), two bones in the next segment (forearm or lower leg), and an irregular subdivision of the fin, roughly comparable to the structure of the carpus / tarsus and phalanges of a hand.

Locomotion

In typical early tetrapod posture, the upper arm and upper leg extended nearly straight horizontal from its body, and the forearm and the lower leg extended downward from the upper segment at a near right angle. The body weight was not centered over the limbs, but was rather transferred 90 degrees outward and down through the lower limbs, which touched the ground. Most of the animal's strength was used to just lift its body off the ground for walking, which was probably slow and difficult. With this sort of posture, it could only make short broad strides. This has been confirmed by fossilized footprints found in Carboniferous rocks.

Feeding

Early tetrapods had a wide gaping jaw with weak muscles to open and close it. In the jaw were moderate-sized palatal and vomerine (upper) and coronoid (lower) fangs, as well rows of smaller teeth. This was in contrast to the larger fangs and small marginal teeth of earlier tetrapodomorph fishes such as Eusthenopteron. Although this indicates a change in feeding habits, the exact nature of the change in unknown. Some scholars have suggested a change to bottom-feeding or feeding in shallower waters (Ahlberg and Milner 1994). Others have suggesting a mode of feeding comparable to that of the Japanese giant salamander, which uses both suction feeding and direct biting to eat small crustaceans and fish. A study of these jaws shows that they were used for feeding underwater, not on land.

In later terrestrial tetrapods, two methods of jaw closure emerge: static and kinetic inertial (also known as snapping). In the static system, the jaw muscles are arranged in such a way that the jaws have maximum force when shut or nearly shut. In the kinetic inertial system, maximum force is applied when the jaws are wide open, resulting in the jaws snapping shut with great velocity and momentum. Although the kinetic inertial system is occasionally found in fish, it requires special adaptations (such as very narrow jaws) to deal with the high viscosity and density of water, which would otherwise impede rapid jaw closure.

The tetrapod tongue is built from muscles that once controlled gill openings. The tongue is anchored to the hyoid bone, which was once the lower half of a pair of gill bars (the second pair after the ones that evolved into jaws). The tongue did not evolve until the gills began to disappear. Acanthostega still had gills, so this would have been a later development. In an aquatically feeding animals, the food is supported by water and can literally float (or get sucked in) to the mouth. On land, the tongue becomes important.

Respiration

The evolution of early tetrapod respiration was influenced by an event known as the "charcoal gap", a period of more than 20 million years, in the middle and late Devonian, when atmospheric oxygen levels were too low to sustain wildfires. During this time, fish inhabiting anoxic waters (very low in oxygen) would have been under evolutionary pressure to develop their air-breathing ability.

Early tetrapods probably relied on four methods of respiration: with lungs, with gills, cutaneous respiration (skin breathing), and breathing through the lining of the digestive tract, especially the mouth.

Gills

The early tetrapod Acanthostega had at least three and probably four pairs of gill bars, each containing deep grooves in the place where one would expect to find the afferent branchial artery. This strongly suggests that functional gills were present. Some aquatic temnospondyls retained internal gills at least into the early Jurassic. Evidence of clear fish-like internal gills is present in Archegosaurus.

Lungs

Lungs originated as an extra pair of pouches in the throat, behind the gill pouches. They were probably present in the last common ancestor of bony fishes. In some fishes they evolved into swim bladders for maintaining buoyancy. Lungs and swim bladders are homologous (descended from a common ancestral form) as is the case for the pulmonary artery (which delivers de-oxygenated blood from the heart to the lungs) and the arteries that supply swim bladders. Air was introduced into the lungs by a process known as buccal pumping.

In the earliest tetrapods, exhalation was probably accomplished with the aid of the muscles of the torso (the thoracoabdominal region). Inhaling with the ribs was either primitive for amniotes, or evolved independently in at least two different lineages of amniotes. It is not found in amphibians. The muscularized diaphragm is unique to mammals.

Recoil aspiration

Although tetrapods are widely thought to have inhaled through buccal pumping (mouth pumping), according to an alternative hypothesis, aspiration (inhalation) occurred through passive recoil of the exoskeleton in a manner similar to the contemporary primitive ray-finned fish Polypterus. This fish inhales through its spiracle (blowhole), an anatomical feature present in early tetrapods. Exhalation is powered by muscles in the torso. During exhalation, the bony scales in the upper chest region become indented. When the muscles are relaxed, the bony scales spring back into position, generating considerable negative pressure within the torso, resulting in a very rapid intake of air through the spiracle. 

Cutaneous respiration

Skin breathing, known as cutaneous respiration, is common in fish and amphibians, and occur both in and out of water. In some animals waterproof barriers impede the exchange of gases through the skin. For example, keratin in human skin, the scales of reptiles, and modern proteinaceous fish scales impede the exchange of gases. However, early tetrapods had scales made of highly vascularized bone covered with skin. For this reason, it is thought that early tetrapods could engage some significant amount of skin breathing.

Carbon dioxide metabolism

Although air-breathing fish can absorb oxygen through their lungs, the lungs tend to be ineffective for discharging carbon dioxide. In tetrapods, the ability of lungs to discharge CO2 came about gradually, and was not fully attained until the evolution of amniotes. The same limitation applies to gut air breathing (GUT), i.e., breathing with the lining of the digestive tract. Tetrapod skin would have been effective for both absorbing oxygen and discharging CO2, but only up to a point. For this reason, early tetrapods may have experienced chronic hypercapnia (high levels of blood CO2). This is not uncommon in fish that inhabit waters high in CO2. According to one hypothesis, the "sculpted" or "ornamented" dermal skull roof bones found in early tetrapods may have been related to a mechanism for relieving respiratory acidosis (acidic blood caused by excess CO2) through compensatory metabolic alkalosis.

Circulation

Early tetrapods probably had a three-chambered heart, as do modern amphibians and lepidosaurian and chelonian reptiles, in which oxygenated blood from the lungs and de-oxygenated blood from the respiring tissues enters by separate atria, and is directed via a spiral valve to the appropriate vessel — aorta for oxygenated blood and pulmonary vein for deoxygenated blood. The spiral valve is essential to keeping the mixing of the two types of blood to a minimum, enabling the animal to have higher metabolic rates, and be more active than otherwise.

Senses

Olfaction

The difference in density between air and water causes smells (certain chemical compounds detectable by chemoreceptors) to behave differently. An animal first venturing out onto land would have difficulty in locating such chemical signals if its sensory apparatus had evolved in the context of aquatic detection. The vomeronasal organ also evolved in the nasal cavity for the first time, for detecting pheromones from biological substrates on land, though it was subsequently lost or reduced to vestigial in some lineages, like archosaurs and catarrhines, but expanded in others like lepidosaurs.

Lateral line system

Fish have a lateral line system that detects pressure fluctuations in the water. Such pressure is non-detectable in air, but grooves for the lateral line sense organs were found on the skull of early tetrapods, suggesting either an aquatic or largely aquatic habitat. Modern amphibians, which are semi-aquatic, exhibit this feature whereas it has been retired by the higher vertebrates.

Vision

Changes in the eye came about because the behavior of light at the surface of the eye differs between an air and water environment due to the difference in refractive index, so the focal length of the lens altered to function in air. The eye was now exposed to a relatively dry environment rather than being bathed by water, so eyelids developed and tear ducts evolved to produce a liquid to moisten the eyeball.

Early tetrapods inherited a set of five rod and cone opsins known as the vertebrate opsins.

Four cone opsins were present in the first vertebrate, inherited from invertebrate ancestors:

  • LWS/MWS (long—to—medium—wave sensitive) - green, yellow, or red
  • SWS1 (short—wave sensitive) - ultraviolet or violet - lost in monotremes (platypus, echidna)
  • SWS2 (short—wave sensitive) - violet or blue - lost in therians (placental mammals and marsupials)
  • RH2 (rhodopsin—like cone opsin) - green - lost separately in amphibians and mammals, retained in reptiles and birds

A single rod opsin, rhodopsin, was present in the first jawed vertebrate, inherited from a jawless vertebrate ancestor:

  • RH1 (rhodopsin) - blue-green - used night vision and color correction in low-light environments

Balance

Tetrapods retained the balancing function of the inner ear from fish ancestry.

Hearing

Air vibrations could not set up pulsations through the skull as in a proper auditory organ. The spiracle was retained as the otic notch, eventually closed in by the tympanum, a thin, tight membrane of connective tissue also called the eardrum (however this and the otic notch were lost in the ancestral amniotes, and later eardrums were obtained independently).

The hyomandibula of fish migrated upwards from its jaw supporting position, and was reduced in size to form the columella. Situated between the tympanum and braincase in an air-filled cavity, the columella was now capable of transmitting vibrations from the exterior of the head to the interior. Thus the columella became an important element in an impedance matching system, coupling airborne sound waves to the receptor system of the inner ear. This system had evolved independently within several different amphibian lineages.

The impedance matching ear had to meet certain conditions to work. The columella had to be perpendicular to the tympanum, small and light enough to reduce its inertia, and suspended in an air-filled cavity. In modern species that are sensitive to over 1 kHz frequencies, the footplate of the columella is 1/20th the area of the tympanum. However, in early amphibians the columella was too large, making the footplate area oversized, preventing the hearing of high frequencies. So it appears they could only hear high intensity, low frequency sounds—and the columella more probably just supported the brain case against the cheek.

Only in the early Triassic, about a hundred million years after they conquered land, did the tympanic middle ear evolve (independently) in all the tetrapod lineages. About fifty million years later (late Triassic), in mammals, the columella was reduced even further to become the stapes.

Bone marrow

From Wikipedia, the free encyclopedia
Bone marrow
A section of bone marrow tissue (Prussian blue-stained)
 
Details
SystemHematopoietic system, Immune system, Lymphatic system
Identifiers
Latinmedulla ossium
MeSHD001853
TA98A13.1.01.001
TA2388
FMA9608

Bone marrow is a semi-solid tissue found within the spongy (also known as cancellous) portions of bones. In birds and mammals, bone marrow is the primary site of new blood cell production (or haematopoiesis). It is composed of hematopoietic cells, marrow adipose tissue, and supportive stromal cells. In adult humans, bone marrow is primarily located in the ribs, vertebrae, sternum, and bones of the pelvis. Bone marrow comprises approximately 5% of total body mass in healthy adult humans, such that a man weighing 73 kg (161 lbs) will have around 3.7 kg (8 lbs) of bone marrow.

Human marrow produces approximately 500 billion blood cells per day, which join the systemic circulation via permeable vasculature sinusoids within the medullary cavity. All types of hematopoietic cells, including both myeloid and lymphoid lineages, are created in bone marrow; however, lymphoid cells must migrate to other lymphoid organs (e.g. thymus) in order to complete maturation.

Bone marrow transplants can be conducted to treat severe diseases of the bone marrow, including certain forms of cancer such as leukemia. Several types of stem cells are related to bone marrow. Hematopoietic stem cells in the bone marrow can give rise to hematopoietic lineage cells, and mesenchymal stem cells, which can be isolated from the primary culture of bone marrow stroma, can give rise to bone, adipose, and cartilage tissue.

Structure

The composition of marrow is dynamic, as the mixture of cellular and non-cellular components (connective tissue) shifts with age and in response to systemic factors. In humans, marrow is colloquially characterized as "red" or "yellow" marrow (Latin: medulla ossium rubra, Latin: medulla ossium flava, respectively) depending on the prevalence of hematopoietic cells vs fat cells. While the precise mechanisms underlying marrow regulation are not understood, compositional changes occur according to stereotypical patterns. For example, a newborn baby's bones exclusively contain hematopoietically active "red" marrow, and there is a progressive conversion towards "yellow" marrow with age. In adults, red marrow is found mainly in the central skeleton, such as the pelvis, sternum, cranium, ribs, vertebrae and scapulae, and variably found in the proximal epiphyseal ends of long bones such as the femur and humerus. In circumstances of chronic hypoxia, the body can convert yellow marrow back to red marrow to increase blood cell production.

Hematopoietic components

Bone marrow aspirate showing normal "trilineage hematopoiesis": myelomonocytic cells (an eosinophil myelocyte marked), erythroid cells (an orthochromatic erythroblast marked), and megakaryocytic cells
Hematopoietic precursor cells: promyelocyte in the center, two metamyelocytes next to it and band cells from a bone marrow aspirate

At the cellular level, the main functional component of bone marrow includes the progenitor cells which are destined to mature into blood and lymphoid cells. Human marrow produces approximately 500 billion blood cells per day. Marrow contains hematopoietic stem cells which give rise to the three classes of blood cells that are found in circulation: white blood cells (leukocytes), red blood cells (erythrocytes), and platelets (thrombocytes).

Cellular constitution of the red bone marrow parenchyma
Group Cell type Average
fraction
Reference
range
Myelopoietic
cells
Myeloblasts 0.9 0.2–1.5
Promyelocytes 3.3% 2.1–4.1
Neutrophilic myelocytes 12.7% 8.2–15.7
Eosinophilic myelocytes 0.8% 0.2–1.3
Neutrophilic metamyelocytes 15.9% 9.6–24.6
Eosinophilic metamyelocytes 1.2% 0.4–2.2
Neutrophilic band cells 12.4% 9.5–15.3
Eosinophilic band cells 0.9% 0.2–2.4
Segmented neutrophils 7.4% 6.0–12.0
Segmented eosinophils 0.5% 0.0–1.3
Segmented basophils and mast cells 0.1% 0.0–0.2
Erythropoietic
cells
Pronormoblasts 0.6% 0.2–1.3
Basophilic normoblasts 1.4% 0.5–2.4
Polychromatic normoblasts 21.6% 17.9–29.2
Orthochromatic normoblast 2.0% 0.4–4.6
Other cell
types
Megakaryocytes < 0.1% 0.0-0.4
Plasma cells 1.3% 0.4-3.9
Reticular cells 0.3% 0.0-0.9
Lymphocytes 16.2% 11.1-23.2
Monocytes 0.3% 0.0-0.8

Stroma

The stroma of the bone marrow includes all tissue not directly involved in the marrow's primary function of hematopoiesis. Stromal cells may be indirectly involved in hematopoiesis, providing a microenvironment that influences the function and differentiation of hematopoietic cells. For instance, they generate colony stimulating factors, which have a significant effect on hematopoiesis. Cell types that constitute the bone marrow stroma include:

Function

Mesenchymal stem cells

The bone marrow stroma contains mesenchymal stem cells (MSCs), which are also known as marrow stromal cells. These are multipotent stem cells that can differentiate into a variety of cell types. MSCs have been shown to differentiate, in vitro or in vivo, into osteoblasts, chondrocytes, myocytes, marrow adipocytes and beta-pancreatic islets cells.

Bone marrow barrier

The blood vessels of the bone marrow constitute a barrier, inhibiting immature blood cells from leaving the marrow. Only mature blood cells contain the membrane proteins, such as aquaporin and glycophorin, that are required to attach to and pass the blood vessel endothelium. Hematopoietic stem cells may also cross the bone marrow barrier, and may thus be harvested from blood.

Lymphatic role

The red bone marrow is a key element of the lymphatic system, being one of the primary lymphoid organs that generate lymphocytes from immature hematopoietic progenitor cells. The bone marrow and thymus constitute the primary lymphoid tissues involved in the production and early selection of lymphocytes. Furthermore, bone marrow performs a valve-like function to prevent the backflow of lymphatic fluid in the lymphatic system.

Compartmentalization

Biological compartmentalization is evident within the bone marrow, in that certain cell types tend to aggregate in specific areas. For instance, erythrocytes, macrophages, and their precursors tend to gather around blood vessels, while granulocytes gather at the borders of the bone marrow.

As food

People have used animal bone-marrow in cuisine worldwide for millennia, as in the famed Milanese Ossobuco.

Clinical significance

Disease

The normal bone marrow architecture can be damaged or displaced by aplastic anemia, malignancies such as multiple myeloma, or infections such as tuberculosis, leading to a decrease in the production of blood cells and blood platelets. The bone marrow can also be affected by various forms of leukemia, which attacks its hematologic progenitor cells. Furthermore, exposure to radiation or chemotherapy will kill many of the rapidly dividing cells of the bone marrow, and will therefore result in a depressed immune system. Many of the symptoms of radiation poisoning are due to damage sustained by the bone marrow cells.

To diagnose diseases involving the bone marrow, a bone marrow aspiration is sometimes performed. This typically involves using a hollow needle to acquire a sample of red bone marrow from the crest of the ilium under general or local anesthesia.

Application of stem cells in therapeutics

Bone marrow derived stem cells have a wide array of application in regenerative medicine.

Imaging

Medical imaging may provide a limited amount of information regarding bone marrow. Plain film x-rays pass through soft tissues such as marrow and do not provide visualization, although any changes in the structure of the associated bone may be detected. CT imaging has somewhat better capacity for assessing the marrow cavity of bones, although with low sensitivity and specificity. For example, normal fatty "yellow" marrow in adult long bones is of low density (-30 to -100 Hounsfield units), between subcutaneous fat and soft tissue. Tissue with increased cellular composition, such as normal "red" marrow or cancer cells within the medullary cavity will measure variably higher in density.

MRI is more sensitive and specific for assessing bone composition. MRI enables assessment of the average molecular composition of soft tissues and thus provides information regarding the relative fat content of marrow. In adult humans, "yellow" fatty marrow is the dominant tissue in bones, particularly in the (peripheral) appendicular skeleton. Because fat molecules have a high T1-relaxivity, T1-weighted imaging sequences show "yellow" fatty marrow as bright (hyperintense). Furthermore, normal fatty marrow loses signal on fat-saturation sequences, in a similar pattern to subcutaneous fat.

When "yellow" fatty marrow becomes replaced by tissue with more cellular composition, this change is apparent as decreased brightness on T1-weighted sequences. Both normal "red" marrow and pathologic marrow lesions (such as cancer) are darker than "yellow" marrow on T1-weight sequences, although can often be distinguished by comparison with the MR signal intensity of adjacent soft tissues. Normal "red" marrow is typically equivalent or brighter than skeletal muscle or intervertebral disc on T1-weighted sequences.

Fatty marrow change, the inverse of red marrow hyperplasia, can occur with normal aging, though it can also be seen with certain treatments such as radiation therapy. Diffuse marrow T1 hypointensity without contrast enhancement or cortical discontinuity suggests red marrow conversion or myelofibrosis. Falsely normal marrow on T1 can be seen with diffuse multiple myeloma or leukemic infiltration when the water to fat ratio is not sufficiently altered, as may be seen with lower grade tumors or earlier in the disease process.

Histology

A Wright's-stained bone marrow aspirate smear from a patient with leukemia

Bone marrow examination is the pathologic analysis of samples of bone marrow obtained via biopsy and bone marrow aspiration. Bone marrow examination is used in the diagnosis of a number of conditions, including leukemia, multiple myeloma, anemia, and pancytopenia. The bone marrow produces the cellular elements of the blood, including platelets, red blood cells and white blood cells. While much information can be gleaned by testing the blood itself (drawn from a vein by phlebotomy), it is sometimes necessary to examine the source of the blood cells in the bone marrow to obtain more information on hematopoiesis; this is the role of bone marrow aspiration and biopsy.

The ratio between myeloid series and erythroid cells is relevant to bone marrow function, and also to diseases of the bone marrow and peripheral blood, such as leukemia and anemia. The normal myeloid-to-erythroid ratio is around 3:1; this ratio may increase in myelogenous leukemias, decrease in polycythemias, and reverse in cases of thalassemia.

Donation and transplantation

A bone marrow harvest in progress
The preferred sites for the procedure

In a bone marrow transplant, hematopoietic stem cells are removed from a person and infused into another person (allogenic) or into the same person at a later time (autologous). If the donor and recipient are compatible, these infused cells will then travel to the bone marrow and initiate blood cell production. Transplantation from one person to another is conducted for the treatment of severe bone marrow diseases, such as congenital defects, autoimmune diseases or malignancies. The patient's own marrow is first killed off with drugs or radiation, and then the new stem cells are introduced. Before radiation therapy or chemotherapy in cases of cancer, some of the patient's hematopoietic stem cells are sometimes harvested and later infused back when the therapy is finished to restore the immune system.

Bone marrow stem cells can be induced to become neural cells to treat neurological illnesses, and can also potentially be used for the treatment of other illnesses, such as inflammatory bowel disease. In 2013, following a clinical trial, scientists proposed that bone marrow transplantation could be used to treat HIV in conjunction with antiretroviral drugs; however, it was later found that HIV remained in the bodies of the test subjects.

Harvesting

The stem cells are typically harvested directly from the red marrow in the iliac crest, often under general anesthesia. The procedure is minimally invasive and does not require stitches afterwards. Depending on the donor's health and reaction to the procedure, the actual harvesting can be an outpatient procedure, or can require 1–2 days of recovery in the hospital.

Another option is to administer certain drugs that stimulate the release of stem cells from the bone marrow into circulating blood. An intravenous catheter is inserted into the donor's arm, and the stem cells are then filtered out of the blood. This procedure is similar to that used in blood or platelet donation. In adults, bone marrow may also be taken from the sternum, while the tibia is often used when taking samples from infants. In newborns, stem cells may be retrieved from the umbilical cord.

Persistent viruses

Using quantitative Polymerase Chain Reaction (qPCR) and Next-generation Sequencing (NGS) a maximum of five DNA viruses per individual have been identified. Included were several herpesviruses, hepatitis B virus, Merkel cell polyomavirus, and human papillomavirus 31. Given the reactivation and/or oncogenic potential of these viruses, their repercussion on hematopoietic and malignant disorders calls for further studies.

Fossil record

Bone marrow may have first evolved in Eusthenopteron, a species of prehistoric fish with close links to early tetrapods.

The earliest fossilised evidence of bone marrow was discovered in 2014 in Eusthenopteron, a lobe-finned fish which lived during the Devonian period approximately 370 million years ago. Scientists from Uppsala University and the European Synchrotron Radiation Facility used X-ray synchrotron microtomography to study the fossilised interior of the skeleton's humerus, finding organised tubular structures akin to modern vertebrate bone marrow. Eusthenopteron is closely related to the early tetrapods, which ultimately evolved into the land-dwelling mammals and lizards of the present day.

Thursday, October 26, 2023

Radioactive tracer

From Wikipedia, the free encyclopedia

A radioactive tracer, radiotracer, or radioactive label is a chemical compound in which one or more atoms have been replaced by a radionuclide so by virtue of its radioactive decay it can be used to explore the mechanism of chemical reactions by tracing the path that the radioisotope follows from reactants to products. Radiolabeling or radiotracing is thus the radioactive form of isotopic labeling. In biological contexts, use of radioisotope tracers are sometimes called radioisotope feeding experiments.

Radioisotopes of hydrogen, carbon, phosphorus, sulfur, and iodine have been used extensively to trace the path of biochemical reactions. A radioactive tracer can also be used to track the distribution of a substance within a natural system such as a cell or tissue, or as a flow tracer to track fluid flow. Radioactive tracers are also used to determine the location of fractures created by hydraulic fracturing in natural gas production. Radioactive tracers form the basis of a variety of imaging systems, such as, PET scans, SPECT scans and technetium scans. Radiocarbon dating uses the naturally occurring carbon-14 isotope as an isotopic label.

Methodology

Isotopes of a chemical element differ only in the mass number. For example, the isotopes of hydrogen can be written as 1H, 2H and 3H, with the mass number superscripted to the left. When the atomic nucleus of an isotope is unstable, compounds containing this isotope are radioactive. Tritium is an example of a radioactive isotope.

The principle behind the use of radioactive tracers is that an atom in a chemical compound is replaced by another atom, of the same chemical element. The substituting atom, however, is a radioactive isotope. This process is often called radioactive labeling. The power of the technique is due to the fact that radioactive decay is much more energetic than chemical reactions. Therefore, the radioactive isotope can be present in low concentration and its presence detected by sensitive radiation detectors such as Geiger counters and scintillation counters. George de Hevesy won the 1943 Nobel Prize for Chemistry "for his work on the use of isotopes as tracers in the study of chemical processes".

There are two main ways in which radioactive tracers are used

  1. When a labeled chemical compound undergoes chemical reactions one or more of the products will contain the radioactive label. Analysis of what happens to the radioactive isotope provides detailed information on the mechanism of the chemical reaction.
  2. A radioactive compound is introduced into a living organism and the radio-isotope provides a means to construct an image showing the way in which that compound and its reaction products are distributed around the organism.

Production

The commonly used radioisotopes have short half lives and so do not occur in nature in large amounts. They are produced by nuclear reactions. One of the most important processes is absorption of a neutron by an atomic nucleus, in which the mass number of the element concerned increases by 1 for each neutron absorbed. For example,

13C + n14C

In this case the atomic mass increases, but the element is unchanged. In other cases the product nucleus is unstable and decays, typically emitting protons, electrons (beta particle) or alpha particles. When a nucleus loses a proton the atomic number decreases by 1. For example,

32S + n32P + p

Neutron irradiation is performed in a nuclear reactor. The other main method used to synthesize radioisotopes is proton bombardment. The proton are accelerated to high energy either in a cyclotron or a linear accelerator.

Tracer isotopes

Hydrogen

Tritium (hydrogen-3) is produced by neutron irradiation of 6Li:

6Li + n4He + 3H

Tritium has a half-life 4500±8 days (approximately 12.32 years) and it decays by beta decay. The electrons produced have an average energy of 5.7 keV. Because the emitted electrons have relatively low energy, the detection efficiency by scintillation counting is rather low. However, hydrogen atoms are present in all organic compounds, so tritium is frequently used as a tracer in biochemical studies.

Carbon

11C decays by positron emission with a half-life of ca. 20 min. 11C is one of the isotopes often used in positron emission tomography.

14C decays by beta decay, with a half-life of 5730 years. It is continuously produced in the upper atmosphere of the earth, so it occurs at a trace level in the environment. However, it is not practical to use naturally-occurring 14C for tracer studies. Instead it is made by neutron irradiation of the isotope 13C which occurs naturally in carbon at about the 1.1% level. 14C has been used extensively to trace the progress of organic molecules through metabolic pathways.

Nitrogen

13N decays by positron emission with a half-life of 9.97 min. It is produced by the nuclear reaction

1H + 16O13N + 4He

13N is used in positron emission tomography (PET scan).

Oxygen

15O decays by positron emission with a half-life of 122 sec. It is used in positron emission tomography.

Fluorine

18F decays predominately by β emission, with a half-life of 109.8 min. It is made by proton bombardment of 18O in a cyclotron or linear particle accelerator. It is an important isotope in the radiopharmaceutical industry. For example, it is used to make labeled fluorodeoxyglucose (FDG) for application in PET scans.

Phosphorus

32P is made by neutron bombardment of 32S

32S + n32P + p

It decays by beta decay with a half-life of 14.29 days. It is commonly used to study protein phosphorylation by kinases in biochemistry.

33P is made in relatively low yield by neutron bombardment of 31P. It is also a beta-emitter, with a half-life of 25.4 days. Though more expensive than 32P, the emitted electrons are less energetic, permitting better resolution in, for example, DNA sequencing.

Both isotopes are useful for labeling nucleotides and other species that contain a phosphate group.

Sulfur

35S is made by neutron bombardment of 35Cl

35Cl + n35S + p

It decays by beta-decay with a half-life of 87.51 days. It is used to label the sulfur-containing amino-acids methionine and cysteine. When a sulfur atom replaces an oxygen atom in a phosphate group on a nucleotide a thiophosphate is produced, so 35S can also be used to trace a phosphate group.

Technetium

99mTc is a very versatile radioisotope, and is the most commonly used radioisotope tracer in medicine. It is easy to produce in a technetium-99m generator, by decay of 99Mo.

99Mo → 99mTc +
e
+
ν
e

The molybdenum isotope has a half-life of approximately 66 hours (2.75 days), so the generator has a useful life of about two weeks. Most commercial 99mTc generators use column chromatography, in which 99Mo in the form of molybdate, MoO42− is adsorbed onto acid alumina (Al2O3). When the 99Mo decays it forms pertechnetate TcO4, which because of its single charge is less tightly bound to the alumina. Pulling normal saline solution through the column of immobilized 99Mo elutes the soluble 99mTc, resulting in a saline solution containing the 99mTc as the dissolved sodium salt of the pertechnetate. The pertechnetate is treated with a reducing agent such as Sn2+ and a ligand. Different ligands form coordination complexes which give the technetium enhanced affinity for particular sites in the human body.

99mTc decays by gamma emission, with a half-life: 6.01 hours. The short half-life ensures that the body-concentration of the radioisotope falls effectively to zero in a few days.

Iodine

123I is produced by proton irradiation of 124Xe. The caesium isotope produced is unstable and decays to 123I. The isotope is usually supplied as the iodide and hypoiodate in dilute sodium hydroxide solution, at high isotopic purity. 123I has also been produced at Oak Ridge National Laboratories by proton bombardment of 123Te.

123I decays by electron capture with a half-life of 13.22 hours. The emitted 159 keV gamma ray is used in single-photon emission computed tomography (SPECT). A 127 keV gamma ray is also emitted.

125I is frequently used in radioimmunoassays because of its relatively long half-life (59 days) and ability to be detected with high sensitivity by gamma counters.

129I is present in the environment as a result of the testing of nuclear weapons in the atmosphere. It was also produced in the Chernobyl and Fukushima disasters. 129I decays with a half-life of 15.7 million years, with low-energy beta and gamma emissions. It is not used as a tracer, though its presence in living organisms, including human beings, can be characterized by measurement of the gamma rays.

Other isotopes

Many other isotopes have been used in specialized radiopharmacological studies. The most widely used is 67Ga for gallium scans. 67Ga is used because, like 99mTc, it is a gamma-ray emitter and various ligands can be attached to the Ga3+ ion, forming a coordination complex which may have selective affinity for particular sites in the human body.

An extensive list of radioactive tracers used in hydraulic fracturing can be found below.

Application

In metabolism research, tritium and 14C-labeled glucose are commonly used in glucose clamps to measure rates of glucose uptake, fatty acid synthesis, and other metabolic processes. While radioactive tracers are sometimes still used in human studies, stable isotope tracers such as 13C are more commonly used in current human clamp studies. Radioactive tracers are also used to study lipoprotein metabolism in humans and experimental animals.

In medicine, tracers are applied in a number of tests, such as 99mTc in autoradiography and nuclear medicine, including single-photon emission computed tomography (SPECT), positron emission tomography (PET) and scintigraphy. The urea breath test for helicobacter pylori commonly used a dose of 14C labeled urea to detect h. pylori infection. If the labeled urea was metabolized by h. pylori in the stomach, the patient's breath would contain labeled carbon dioxide. In recent years, the use of substances enriched in the non-radioactive isotope 13C has become the preferred method, avoiding patient exposure to radioactivity.

In hydraulic fracturing, radioactive tracer isotopes are injected with hydraulic fracturing fluid to determine the injection profile and location of created fractures. Tracers with different half-lives are used for each stage of hydraulic fracturing. In the United States amounts per injection of radionuclide are listed in the US Nuclear Regulatory Commission (NRC) guidelines. According to the NRC, some of the most commonly used tracers include antimony-124, bromine-82, iodine-125, iodine-131, iridium-192, and scandium-46. A 2003 publication by the International Atomic Energy Agency confirms the frequent use of most of the tracers above, and says that manganese-56, sodium-24, technetium-99m, silver-110m, argon-41, and xenon-133 are also used extensively because they are easily identified and measured.

Online machine learning

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