Sulfuric acid

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Sulfuric acid

Space-filling model Ball-and-stick model bond length S=O 142.2 pm S−O 157.4 pm O−H 97 pm

Sulfuric acid (American spelling and the preferred IUPAC name) or sulphuric acid (Commonwealth spelling), known in antiquity as oil of vitriol, is a mineral acid composed of the elements sulfur, oxygen, and hydrogen, with the molecular formula H₂SO₄. It is a colorless, odorless, and viscous liquid that is miscible with water.

Structure of sulfuric acid

Pure sulfuric acid does not occur naturally due to its strong affinity to water vapor; it is hygroscopic and readily absorbs water vapor from the air. Concentrated sulfuric acid is a strong oxidant with powerful dehydrating properties, making it highly corrosive towards other materials, from rocks to metals. Phosphorus pentoxide is a notable exception in that it is not dehydrated by sulfuric acid but, to the contrary, dehydrates sulfuric acid to sulfur trioxide. Upon addition of sulfuric acid to water, a considerable amount of heat is released; thus, the reverse procedure of adding water to the acid is generally avoided since the heat released may boil the solution, spraying droplets of hot acid during the process. Upon contact with body tissue, sulfuric acid can cause severe acidic chemical burns and secondary thermal burns due to dehydration. Dilute sulfuric acid is substantially less hazardous without the oxidative and dehydrating properties; though, it is handled with care for its acidity.

Many methods for its production are known, including the contact process, the wet sulfuric acid process, and the lead chamber process. Sulfuric acid is also a key substance in the chemical industry. It is most commonly used in fertilizer manufacture but is also important in mineral processing, oil refining, wastewater treating, and chemical synthesis. It has a wide range of end applications, including in domestic acidic drain cleaners, as an electrolyte in lead-acid batteries, as a dehydrating compound, and in various cleaning agents. Sulfuric acid can be obtained by dissolving sulfur trioxide in water.

Physical properties

Grades of sulfuric acid

Although nearly 100% sulfuric acid solutions can be made, the subsequent loss of SO₃ at the boiling point brings the concentration to 98.3% acid. The 98.3% grade, which is more stable in storage, is the usual form of what is described as "concentrated sulfuric acid". Other concentrations are used for different purposes. Some common concentrations are:

Mass fraction H2SO4	Density (kg/L)	Concentration (mol/L)	Common name
<29%	1.00–1.25	<4.2	diluted sulfuric acid
29–32%	1.25–1.28	4.2–5.0	battery acid (used in lead–acid batteries)
62–70%	1.52–1.60	9.6–11.5	chamber acid fertilizer acid
78–80%	1.70–1.73	13.5–14.0	tower acid Glover acid
93.2%	1.83	17.4	66 °Bé ("66-degree Baumé") acid
98.3%	1.84	18.4	concentrated sulfuric acid

"Chamber acid" and "tower acid" were the two concentrations of sulfuric acid produced by the lead chamber process, chamber acid being the acid produced in the lead chamber itself (<70% to avoid contamination with nitrosylsulfuric acid) and tower acid being the acid recovered from the bottom of the Glover tower. They are now obsolete as commercial concentrations of sulfuric acid, although they may be prepared in the laboratory from concentrated sulfuric acid if needed. In particular, "10 M" sulfuric acid (the modern equivalent of chamber acid, used in many titrations), is prepared by slowly adding 98% sulfuric acid to an equal volume of water, with good stirring: the temperature of the mixture can rise to 80 °C (176 °F) or higher.

Sulfuric acid

Sulfuric acid contains not only H₂SO₄ molecules, but is actually an equilibrium of many other chemical species, as it is shown in the table below.

Equilibrium of pure sulfuric acid

Species	mMol/kg
HSO−4	15.0
H3SO+4	11.3
H3O+	8.0
HS2O−7	4.4
H2S2O7	3.6
H2O	0.1

Sulfuric acid is a colorless oily liquid, and has a vapor pressure of <0.001 mmHg at 25 °C and 1 mmHg at 145.8 °C, and 98% sulfuric acid has a vapor pressure of <1 mmHg at 40 °C.

In the solid state, sulfuric acid is a molecular solid that forms monoclinic crystals with nearly trigonal lattice parameters. The structure consists of layers parallel to the (010) plane, in which each molecule is connected by hydrogen bonds to two others. Hydrates H₂SO₄·nH₂O are known for n = 1, 2, 3, 4, 6.5, and 8, although most intermediate hydrates are stable against disproportionation.

Polarity and conductivity

Anhydrous H₂SO₄ is a very polar liquid, having a dielectric constant of around 100. It has a high electrical conductivity, a consequence of autoprotolysis, i.e. self-protonation:

2 H₂SO₄ ⇌ H₃SO+4 + HSO−4

The equilibrium constant for autoprotolysis (25 °C) is:

[H₃SO₄]⁺[HSO₄]⁻ = 2.7 × 10⁻⁴

The corresponding equilibrium constant for water, K_w is 10⁻¹⁴, a factor of 10¹⁰ (10 billion) smaller.

In spite of the viscosity of the acid, the effective conductivities of the H₃SO+4 and HSO−4 ions are high due to an intramolecular proton-switch mechanism (analogous to the Grotthuss mechanism in water), making sulfuric acid a good conductor of electricity. It is also an excellent solvent for many reactions.

Chemical properties

Acidity

An experiment that demonstrates the dehydration properties of concentrated sulfuric acid. When concentrated sulfuric acid comes into contact with sucrose, slow carbonification of the sucrose takes place. The reaction is accompanied by the evolution of gaseous products that contribute to the formation of the foamy carbon pillar that rises above the beaker.

Drops of concentrated sulfuric acid rapidly decompose a piece of cotton towel by dehydration.

The hydration reaction of sulfuric acid is highly exothermic.

As indicated by its acid dissociation constant, sulfuric acid is a strong acid:

H₂SO₄ → H₃O⁺ + HSO−4 K_a1 = 1000 (pK_a1 = −3)

The product of this ionization is HSO−4, the bisulfate anion. Bisulfate is a far weaker acid:

HSO−4 + H₂O → H₃O⁺ + SO2−4 K_a2 = 0.01 (pK_a2 = 2)

The product of this second dissociation is SO2−4, the sulfate anion.

Dehydration

Concentrated sulfuric acid has a powerful dehydrating property, removing water (H₂O) from other chemical compounds such as table sugar (sucrose) and other carbohydrates, to produce carbon, steam, and heat. Dehydration of table sugar (sucrose) is a common laboratory demonstration. The sugar darkens as carbon is formed, and a rigid column of black, porous carbon called a carbon snake may emerge.

${\displaystyle \underset{\text{sucrose}}{{\text{C}}_{12}^{}{\text{H}}_{22}^{}{\text{O}}_{11}^{}}⟶\underset{\genfrac{}{}{0ex}{}{\text{black}}{\text{graphitic foam}}}{12\text{C}}+11{\text{H}}_2^{}{\text{O}}_{(\text{g},\text{l})}^{}}$

Similarly, mixing starch into concentrated sulfuric acid gives elemental carbon and water. The effect of this can also be seen when concentrated sulfuric acid is spilled on paper. Paper is composed of cellulose, a polysaccharide related to starch. The cellulose reacts to give a burnt appearance in which the carbon appears much like soot that results from fire. Although less dramatic, the action of the acid on cotton, even in diluted form, destroys the fabric.

${\displaystyle \underset{\text{polysaccharide}}{{[{\text{C}}_6^{}{\text{H}}_{10}^{}{\text{O}}_5^{}]}_n}⟶6n\text{C}+5n{\text{H}}_2^{}\text{O}}$

The reaction with copper(II) sulfate can also demonstrate the dehydration property of sulfuric acid. The blue crystals change into white powder as water is removed.

${\displaystyle \underset{\genfrac{}{}{0ex}{}{\text{copper(II) sulfate}}{\text{pentahydrate}}}{{\text{CuSO}}_4^{}\cdot 5{\text{H}}_2^{}\text{O}}⟶\underset{\genfrac{}{}{0ex}{}{\text{anhydrous}}{\text{copper(II) sulfate}}}{{\text{CuSO}}_4^{}}+5{\text{H}}_2^{}\text{O}}$

Reactions with salts

Sulfuric acid reacts with most bases to give the corresponding sulfate or bisulfate.

Aluminium sulfate, also known as paper maker's alum, is made by treating bauxite with sulfuric acid:

2 AlO(OH) + 3 H₂SO₄ → Al₂(SO₄)₃ + 4 H₂O

Sulfuric acid can also be used to displace weaker acids from their salts. Reaction with sodium acetate, for example, displaces acetic acid, CH₃COOH, and forms sodium bisulfate:

H₂SO₄ + CH₃CO₂Na → NaHSO₄ + CH₃COOH

Similarly, treating potassium nitrate with sulfuric acid produces nitric acid. Sulfuric acid reacts with sodium chloride, and gives hydrogen chloride gas and sodium bisulfate:

NaCl + H₂SO₄ → NaHSO₄ + HCl

When combined with nitric acid, sulfuric acid acts both as an acid and a dehydrating agent, forming the nitronium ion NO+2, which is important in nitration reactions involving electrophilic aromatic substitution. This type of reaction, where protonation occurs on an oxygen atom, is important in many organic chemistry reactions, such as Fischer esterification and dehydration of alcohols.

Solid state structure of the [D₃SO₄]⁺ ion present in [D₃SO₄]⁺[SbF₆]⁻, synthesized by using DF in place of HF.

When allowed to react with superacids, sulfuric acid can act as a base and can be protonated, forming the [H₃SO₄]⁺ ion. Salts of [H₃SO₄]⁺ have been prepared (e.g. trihydroxyoxosulfonium hexafluoroantimonate(V) [H₃SO₄]⁺[SbF₆]⁻) using the following reaction in liquid HF:

[(CH₃)₃SiO]₂SO₂ + 3 HF + SbF₅ → [H₃SO₄]⁺[SbF₆]⁻ + 2 (CH₃)₃SiF

The above reaction is thermodynamically favored due to the high bond enthalpy of the Si–F bond in the side product. Protonation using simply fluoroantimonic acid, however, has met with failure, as pure sulfuric acid undergoes self-ionization to give [H₃O]⁺ ions:

2 H₂SO₄ ⇌ H₃O⁺ + HS₂O−7

which prevents the conversion of H₂SO₄ to [H₃SO₄]⁺ by the HF/SbF₅ system.

Reactions with metals

Even diluted sulfuric acid reacts with many metals via a single displacement reaction, like other typical acids, producing hydrogen gas and salts (the metal sulfate). It attacks reactive metals (metals at positions above copper in the reactivity series) such as iron, aluminium, zinc, manganese, magnesium, and nickel.

Fe + H₂SO₄ → H₂ + FeSO₄

Concentrated sulfuric acid can serve as an oxidizing agent, releasing sulfur dioxide:

Cu + 2 H₂SO₄ → SO₂ + 2 H₂O + SO2−4 + Cu²⁺

Lead and tungsten, however, are resistant to sulfuric acid.

Reactions with carbon and sulfur

Hot concentrated sulfuric acid oxidizes carbon (as bituminous coal) and sulfur:

C + 2 H₂SO₄ → CO₂ + 2 SO₂ + 2 H₂O

S + 2 H₂SO₄ → 3 SO₂ + 2 H₂O

Electrophilic aromatic substitution

Benzene and many derivatives undergo electrophilic aromatic substitution with sulfuric acid to give the corresponding sulfonic acids:

Sulfur–iodine cycle

Sulfuric acid can be used to produce hydrogen from water:

2 I2 + 2 SO2 + 4 H2O → 4 HI + 2 H2SO4		(120 °C, Bunsen reaction)
2 H2SO4 → 2 SO2 + 2 H2O + O2		(830 °C)
4 HI → 2 I2 + 2 H2		(320 °C)

The compounds of sulfur and iodine are recovered and reused, hence the process is called the sulfur–iodine cycle. This process is endothermic and must occur at high temperatures, so energy in the form of heat has to be supplied. The sulfur–iodine cycle has been proposed as a way to supply hydrogen for a hydrogen-based economy. It is an alternative to electrolysis, and does not require hydrocarbons like current methods of steam reforming. But note that all of the available energy in the hydrogen so produced is supplied by the heat used to make it.

Occurrence

Rio Tinto with its highly acidic water

Sulfuric acid is rarely encountered naturally on Earth in anhydrous form, due to its great affinity for water. Dilute sulfuric acid is a constituent of acid rain, which is formed by atmospheric oxidation of sulfur dioxide in the presence of water—i.e. oxidation of sulfurous acid. When sulfur-containing fuels such as coal or oil are burned, sulfur dioxide is the main byproduct (besides the chief products carbon oxides and water).

Sulfuric acid is formed naturally by the oxidation of sulfide minerals, such as pyrite:

2 FeS₂(s) + 7 O₂ + 2 H₂O → 2 Fe²⁺ + 4 SO2−4 + 4 H⁺

The resulting highly acidic water is called acid mine drainage (AMD) or acid rock drainage (ARD).

The Fe²⁺ can be further oxidized to Fe³⁺:

4 Fe²⁺ + O₂ + 4 H⁺ → 4 Fe³⁺ + 2 H₂O

The Fe³⁺ produced can be precipitated as the hydroxide or hydrous iron oxide:

Fe³⁺ + 3 H₂O → Fe(OH)₃↓ + 3 H⁺

The iron(III) ion ("ferric iron") can also oxidize pyrite:

FeS₂(s) + 14 Fe³⁺ + 8 H₂O → 15 Fe²⁺ + 2 SO2−4 + 16 H⁺

When iron(III) oxidation of pyrite occurs, the process can become rapid. pH values below zero have been measured in ARD produced by this process.

ARD can also produce sulfuric acid at a slower rate, so that the acid neutralizing capacity (ANC) of the aquifer can neutralize the produced acid. In such cases, the total dissolved solids (TDS) concentration of the water can be increased from the dissolution of minerals from the acid-neutralization reaction with the minerals.

Sulfuric acid is used as a defense by certain marine species, for example, the phaeophyte alga Desmarestia munda (order Desmarestiales) concentrates sulfuric acid in cell vacuoles.

Stratospheric aerosol

In the stratosphere, the atmosphere's second layer that is generally between 10–50 km above Earth's surface, sulfuric acid is formed by the oxidation of volcanic sulfur dioxide by the hydroxyl radical:

SO₂ + HO^• → HSO₃

HSO₃ + O₂ → SO₃ + HO₂

SO₃ + H₂O → H₂SO₄

Because sulfuric acid reaches supersaturation in the stratosphere, it can nucleate aerosol particles and provide a surface for aerosol growth via condensation and coagulation with other water-sulfuric acid aerosols. This results in the stratospheric aerosol layer.

Extraterrestrial sulfuric acid

The permanent Venusian clouds produce a concentrated acid rain, as the clouds in the atmosphere of Earth produce water rain. Sulfuric acid ice has been detected on Jupiter's moon Europa, where it forms when sulfur ions from Jupiter's magnetosphere implant into the icy surface.

Production

Main articles: Contact process, Wet sulfuric acid process, and Lead chamber process

Sulfuric acid is produced from sulfur, oxygen and water via the conventional contact process (DCDA) or the wet sulfuric acid process (WSA).

Contact process

Main article: Contact process

In the first step, sulfur is burned to produce sulfur dioxide.

S(s) + O₂ → SO₂

The sulfur dioxide is oxidized to sulfur trioxide by oxygen in the presence of a vanadium(V) oxide catalyst. This reaction is reversible and the formation of the sulfur trioxide is exothermic.

2 SO₂ + O₂ ⇌ 2 SO₃

The sulfur trioxide is absorbed into 97–98% H₂SO₄ to form oleum (H₂S₂O₇), also known as fuming sulfuric acid or pyrosulphuric acid. The oleum is then diluted with water to form concentrated sulfuric acid.

H₂SO₄ + SO₃ → H₂S₂O₇

H₂S₂O₇ + H₂O → 2 H₂SO₄

Directly dissolving SO₃ in water, called the "wet sulfuric acid process", is rarely practiced because the reaction is extremely exothermic, resulting in a hot aerosol of sulfuric acid that requires condensation and separation.

Wet sulfuric acid process

Main article: Wet sulfuric acid process

In the first step, sulfur is burned to produce sulfur dioxide:

S + O₂ → SO₂ (−297 kJ/mol)

or, alternatively, hydrogen sulfide (H₂S) gas is incinerated to SO₂ gas:

2 H₂S + 3 O₂ → 2 H₂O + 2 SO₂ (−1036 kJ/mol)

The sulfur dioxide then oxidized to sulfur trioxide using oxygen with vanadium(V) oxide as catalyst.

2 SO₂ + O₂ ⇌ 2 SO₃ (−198 kJ/mol) (reaction is reversible)

The sulfur trioxide is hydrated into sulfuric acid H₂SO₄:

SO₃ + H₂O → H₂SO₄(g) (−101 kJ/mol)

The last step is the condensation of the sulfuric acid to liquid 97–98% H₂SO₄:

H₂SO₄(g) → H₂SO₄(l) (−69 kJ/mol)

Other methods

Burning sulfur together with saltpeter (potassium nitrate, KNO₃), in the presence of steam, has been used historically. As saltpeter decomposes, it oxidizes the sulfur to SO₃, which combines with water to produce sulfuric acid.

Prior to 1900, most sulfuric acid was manufactured by the lead chamber process. As late as 1940, up to 50% of sulfuric acid manufactured in the United States was produced by chamber process plants.

A wide variety of laboratory syntheses are known, and typically begin from sulfur dioxide or an equivalent salt. In the metabisulfite method, hydrochloric acid reacts with metabisulfite to produce sulfur dioxide vapors. The gas is bubbled through nitric acid, which will release brown/red vapors of nitrogen dioxide as the reaction proceeds. The completion of the reaction is indicated by the ceasing of the fumes. This method conveniently does not produce an inseparable mist.

3 SO₂ + 2 HNO₃ + 2 H₂O → 3 H₂SO₄ + 2 NO

Alternatively, dissolving sulfur dioxide in an aqueous solution of an oxidizing metal salt such as copper(II) or iron(III) chloride:

2 FeCl₃ + 2 H₂O + SO₂ → 2 FeCl₂ + H₂SO₄ + 2 HCl

2 CuCl₂ + 2 H₂O + SO₂ → 2 CuCl + H₂SO₄ + 2 HCl

Two less well-known laboratory methods of producing sulfuric acid, albeit in dilute form and requiring some extra effort in purification, rely on electrolysis. A solution of copper(II) sulfate can be electrolyzed with a copper cathode and platinum/graphite anode to give spongy copper at cathode and oxygen gas at the anode. The solution of dilute sulfuric acid indicates completion of the reaction when it turns from blue to clear (production of hydrogen at cathode is another sign):

2 CuSO₄ + 2 H₂O → 2 Cu + 2 H₂SO₄ + O₂

More costly, dangerous, and troublesome is the electrobromine method, which employs a mixture of sulfur, water, and hydrobromic acid as the electrolyte. The sulfur is pushed to bottom of container under the acid solution. Then the copper cathode and platinum/graphite anode are used with the cathode near the surface and the anode is positioned at the bottom of the electrolyte to apply the current. This may take longer and emits toxic bromine/sulfur-bromide vapors, but the reactant acid is recyclable. Overall, only the sulfur and water are converted to sulfuric acid and hydrogen (omitting losses of acid as vapors):

2 HBr → H₂ + Br₂ (electrolysis of aqueous hydrogen bromide)

Br₂ + Br⁻ ↔ Br−3 (initial tribromide production, eventually reverses as Br⁻ depletes)

2 S + Br₂ → S₂Br₂ (bromine reacts with sulfur to form disulfur dibromide)

S₂Br₂ + 8 H₂O + 5 Br₂ → 2 H₂SO₄ + 12 HBr (oxidation and hydration of disulfur dibromide)

Uses

Sulfuric acid production in 2000

Sulfuric acid is a very important commodity chemical, and a nation's sulfuric acid production was as recently as 2002 believed to be a good indicator of its industrial strength. World production in the year 2004 was about 180 million tonnes, with the following geographic distribution: Asia 35%, North America (including Mexico) 24%, Africa 11%, Western Europe 10%, Eastern Europe and Russia 10%, Australia and Oceania 7%, South America 7%. World production in 2022 was estimated at about 260 million tonnes.

As of the late 20th century, most of the produced amount (≈60%) was consumed for fertilizers, particularly superphosphates, ammonium phosphate and ammonium sulfates. About 20% is used in chemical industry for production of detergents, synthetic resins, dyestuffs, pharmaceuticals, petroleum catalysts, insecticides and antifreeze, as well as in various processes such as oil well acidicizing, aluminium reduction, paper sizing, and water treatment. About 6% of uses are related to pigments and include paints, enamels, printing inks, coated fabrics and paper, while the rest is dispersed into a multitude of applications such as production of explosives, cellophane, acetate and viscose textiles, lubricants, non-ferrous metals, and batteries.

Industrial production of chemicals

The dominant use for sulfuric acid is in the "wet method" for the production of phosphoric acid, used for manufacture of phosphate fertilizers. In this method, phosphate rock is used, and more than 100 million tonnes are processed annually. This raw material is shown below as fluorapatite, though the exact composition may vary. This is treated with 93% sulfuric acid to produce calcium sulfate, hydrogen fluoride (HF) and phosphoric acid. The HF is removed as hydrofluoric acid. The overall process can be represented as:

${\displaystyle \underset{\text{fluorapatite}}{{\text{Ca}}_5^{}{({\text{PO}}_4^{})}_3^{}\text{F}}+5{\text{H}}_2^{}{\text{SO}}_4^{}+10{\text{H}}_2^{}\text{O}⟶\underset{\genfrac{}{}{0ex}{}{\text{calcium sulfate}}{\text{dihydrate}}}{5{\text{CaSO}}_4^{}\cdot 2{\text{H}}_2^{}\text{O}}+\text{HF}+3{\text{H}}_3^{}{\text{PO}}_4^{}}$

Ammonium sulfate, an important nitrogen fertilizer, is most commonly produced as a byproduct from coking plants supplying the iron and steel making plants. Reacting the ammonia produced in the thermal decomposition of coal with waste sulfuric acid allows the ammonia to be crystallized out as a salt (often brown because of iron contamination) and sold into the agro-chemicals industry.

Sulfuric acid is also important in the manufacture of dyestuffs solutions.

Industrial cleaning agent

Sulfuric acid is used in steelmaking and other metallurgical industries as a pickling agent for removal of rust and fouling. Used acid is often recycled using a spent acid regeneration (SAR) plant. These plants combust spent acid with natural gas, refinery gas, fuel oil or other fuel sources. This combustion process produces gaseous sulfur dioxide (SO₂) and sulfur trioxide (SO₃) which are then used to manufacture "new" sulfuric acid.

Hydrogen peroxide (H₂O₂) can be added to sulfuric acid to produce piranha solution, a powerful but potentially hazardous cleaning solution with which substrate surfaces can be cleaned. Piranha solution is typically used in the microelectronics industry, and also in laboratory settings to clean glassware.

Catalyst

Sulfuric acid is used for a variety of other purposes in the chemical industry. For example, it is the usual acid catalyst for the conversion of cyclohexanone oxime to caprolactam, used for making nylon. It is used for making hydrochloric acid from salt via the Mannheim process. Much H₂SO₄ is used in petroleum refining, for example as a catalyst for the reaction of isobutane with isobutylene to give isooctane, a compound that raises the octane rating of gasoline (petrol). Sulfuric acid is also often used as a dehydrating or oxidizing agent in industrial reactions, such as the dehydration of various sugars to form solid carbon.

Electrolyte

Domestic acidic drain cleaners usually contain sulfuric acid at a high concentration which turns a piece of pH paper red and chars it instantly, demonstrating both the strong acidic nature and dehydrating property.

Sulfuric acid acts as the electrolyte in lead–acid batteries (lead-acid accumulator):

At anode:

Pb + SO2−4 ⇌ PbSO₄ + 2 e⁻

At cathode:

PbO₂ + 4 H⁺ + SO2−4 + 2 e⁻ ⇌ PbSO₄ + 2 H₂O

Domestic acidic drain cleaners can be used to dissolve grease, hair and even tissue paper inside water pipes.

Overall:

Pb + PbO₂ + 4 H⁺ + 2 SO2−4 ⇌ 2 PbSO₄ + 2 H₂O

Domestic uses

Sulfuric acid at high concentrations is frequently the major ingredient in domestic acidic drain cleaners which are used to remove lipids, hair, tissue paper, etc. Similar to their alkaline versions, such drain openers can dissolve fats and proteins via hydrolysis. Moreover, as concentrated sulfuric acid has a strong dehydrating property, it can remove tissue paper via dehydrating process as well. Since the acid may react with water vigorously, such acidic drain openers should be added slowly into the pipe to be cleaned.

History

John Dalton's 1808 sulfuric acid molecule shows a central sulfur atom bonded to three oxygen atoms, or sulfur trioxide, the anhydride of sulfuric acid.

Vitriols

The study of vitriols (hydrated sulfates of various metals forming glassy minerals from which sulfuric acid can be derived) began in ancient times. Sumerians had a list of types of vitriol that they classified according to the substances' color. Some of the earliest discussions on the origin and properties of vitriol is in the works of the Greek physician Dioscorides (first century AD) and the Roman naturalist Pliny the Elder (23–79 AD). Galen also discussed its medical use. Metallurgical uses for vitriolic substances were recorded in the Hellenistic alchemical works of Zosimos of Panopolis, in the treatise Phisica et Mystica, and the Leyden papyrus X. Medieval Islamic alchemists like the authors writing under the name of Jabir ibn Hayyan (died c. 806 – c. 816 AD, known in Latin as Geber), Abu Bakr al-Razi (865 – 925 AD, known in Latin as Rhazes), Ibn Sina (980 – 1037 AD, known in Latin as Avicenna), and Muhammad ibn Ibrahim al-Watwat (1234 – 1318 AD) included vitriol in their mineral classification lists.

Jabir ibn Hayyan, Abu Bakr al-Razi, Ibn Sina, et al.

The Jabirian authors and al-Razi experimented extensively with the distillation of various substances, including vitriols. In one recipe recorded in his Kitāb al-Asrār ('Book of Secrets'), al-Razi may have created sulfuric acid without being aware of it:

Take white (Yemeni) alum, dissolve it and purify it by filtration. Then distil (green?) vitriol with copper-green (the acetate), and mix (the distillate) with the filtered solution of the purified alum, afterwards let it solidify (or crystallise) in the glass beaker. You will get the best qalqadis (white alum) that may be had.

— Abu Bakr al-Razi, Kitāb al-Asrār

In an anonymous Latin work variously attributed to Aristotle (under the title Liber Aristotilis, 'Book of Aristotle'), to al-Razi (under the title Lumen luminum magnum, 'Great Light of Lights'), or to Ibn Sina, the author speaks of an 'oil' (oleum) obtained through the distillation of iron(II) sulfate (green vitriol), which was likely 'oil of vitriol' or sulfuric acid. The work refers multiple times to Jabir ibn Hayyan's Seventy Books (Liber de septuaginta), one of the few Arabic Jabir works that were translated into Latin. The author of the version attributed to al-Razi also refers to the Liber de septuaginta as his own work, showing that he erroneously believed the Liber de septuaginta to be a work by al-Razi. There are several indications that the anonymous work was an original composition in Latin, although according to one manuscript it was translated by a certain Raymond of Marseilles, meaning that it may also have been a translation from the Arabic.

According to Ahmad Y. al-Hassan, three recipes for sulfuric acid occur in an anonymous Garshuni manuscript containing a compilation taken from several authors and dating from before c. 1100 AD. One of them runs as follows:

The water of vitriol and sulphur which is used to irrigate the drugs: yellow vitriol three parts, yellow sulphur one part, grind them and distil them in the manner of rose-water.

A recipe for the preparation of sulfuric acid is mentioned in Risālat Jaʿfar al-Sādiq fī ʿilm al-ṣanʿa, an Arabic treatise falsely attributed to the Shi'i Imam Ja'far al-Sadiq (died 765). Julius Ruska dated this treatise to the 13th century, but according to Ahmad Y. al-Hassan it likely dates from an earlier period:

Then distil green vitriol in a cucurbit and alembic, using medium fire; take what you obtain from the distillate, and you will find it clear with a greenish tint.

Vincent of Beauvais, Albertus Magnus, and pseudo-Geber

Sulfuric acid was called 'oil of vitriol' by medieval European alchemists because it was prepared by roasting iron(II) sulfate or green vitriol in an iron retort. The first allusions to it in works that are European in origin appear in the thirteenth century AD, as for example in the works of Vincent of Beauvais, in the Compositum de Compositis ascribed to Albertus Magnus, and in pseudo-Geber's Summa perfectionis.

Producing sulfuric acid from sulfur

A method of producing oleum sulphuris per campanam, or "oil of sulfur by the bell", was known by the 16th century: it involved burning sulfur under a glass bell in moist weather (or, later, under a moistened bell). However, it was very inefficient (according to Gesner, 5 pounds (2.3 kg) of sulfur converted into less than 1 ounce (0.03 kg) of acid), and the resulting product was contaminated by sulfurous acid (or rather, solution of sulfur dioxide) so most alchemists (including, for example, Isaac Newton) didn't consider it equivalent with the "oil of vitriol".

In the 17th century, Johann Rudolf Glauber discovered that adding saltpeter (potassium nitrate, KNO₃) significantly improves the output, also replacing moisture with steam. As saltpeter decomposes, it oxidizes the sulfur to SO₃, which combines with water to produce sulfuric acid. In 1736, Joshua Ward, a London pharmacist, used this method to begin the first large-scale production of sulfuric acid.

Lead chamber process

In 1746 in Birmingham, John Roebuck adapted this method to produce sulfuric acid in lead-lined chambers, which were stronger, less expensive, and could be made larger than the previously used glass containers. This process allowed the effective industrialization of sulfuric acid production. After several refinements, this method, called the lead chamber process or "chamber process", remained the standard for sulfuric acid production for almost two centuries.

Distillation of pyrite

Sulfuric acid created by John Roebuck's process approached a 65% concentration. Later refinements to the lead chamber process by French chemist Joseph Louis Gay-Lussac and British chemist John Glover improved concentration to 78%. However, the manufacture of some dyes and other chemical processes require a more concentrated product. Throughout the 18th century, this could only be made by dry distilling minerals in a technique similar to the original alchemical processes. Pyrite (iron disulfide, FeS₂) was heated in air to yield iron(II) sulfate, FeSO₄, which was oxidized by further heating in air to form iron(III) sulfate, Fe₂(SO₄)₃, which, when heated to 480 °C, decomposed to iron(III) oxide and sulfur trioxide, which could be passed through water to yield sulfuric acid in any concentration. However, the expense of this process prevented the large-scale use of concentrated sulfuric acid.

Contact process

In 1831, British vinegar merchant Peregrine Phillips patented the contact process, which was a far more economical process for producing sulfur trioxide and concentrated sulfuric acid. Today, nearly all of the world's sulfuric acid is produced using this method.

In the early to mid 19th century "vitriol" plants existed, among other places, in Prestonpans in Scotland, Shropshire and the Lagan Valley in County Antrim, Northern Ireland, where it was used as a bleach for linen. Early bleaching of linen was done using lactic acid from sour milk but this was a slow process and the use of vitriol sped up the bleaching process.

Safety

Laboratory hazards

Drops of 98% sulfuric acid char a piece of tissue paper instantly. Carbon is left after the dehydration reaction staining the paper black.

Nitrile glove exposed to drops of 98% sulfuric acid for 10 minutes

Superficial chemical burn caused by two 98% sulfuric acid splashes (forearm skin)

Sulfuric acid is capable of causing very severe burns, especially when it is at high concentrations. In common with other corrosive acids and alkali, it readily decomposes proteins and lipids through amide and ester hydrolysis upon contact with living tissues, such as skin and flesh. In addition, it exhibits a strong dehydrating property on carbohydrates, liberating extra heat and causing secondary thermal burns. Accordingly, it rapidly attacks the cornea and can induce permanent blindness if splashed onto eyes. If ingested, it damages internal organs irreversibly and may even be fatal. Personal protective equipment should hence always be used when handling it. Moreover, its strong oxidizing property makes it highly corrosive to many metals and may extend its destruction on other materials. Because of such reasons, damage posed by sulfuric acid is potentially more severe than that by other comparable strong acids, such as hydrochloric acid and nitric acid.

Sulfuric acid must be stored carefully in containers made of nonreactive material (such as glass). Solutions equal to or stronger than 1.5 M are labeled "CORROSIVE", while solutions greater than 0.5 M but less than 1.5 M are labeled "IRRITANT". However, even the normal laboratory "dilute" grade (approximately 1 M, 10%) will char paper if left in contact for a sufficient time.

The standard first aid treatment for acid spills on the skin is, as for other corrosive agents, irrigation with large quantities of water. Washing is continued for at least ten to fifteen minutes to cool the tissue surrounding the acid burn and to prevent secondary damage. Contaminated clothing is removed immediately and the underlying skin washed thoroughly.

Dilution hazards

Preparation of diluted acid can be dangerous due to the heat released in the dilution process. To avoid splattering, the concentrated acid is usually added to water and not the other way around. A saying used to remember this is "Do like you oughta, add the acid to the water". Water has a higher heat capacity than the acid, and so a vessel of cold water will absorb heat as acid is added.

Comparison of sulfuric acid and water

Physical property	H2SO4	Water	Units
Density	1.84	1.0	kg/l
Volumetric heat capacity	2.54	4.18	kJ/l
Boiling point	337	100	°C

Also, because the acid is denser than water, it sinks to the bottom. Heat is generated at the interface between acid and water, which is at the bottom of the vessel. Acid will not boil, because of its higher boiling point. Warm water near the interface rises due to convection, which cools the interface, and prevents boiling of either acid or water.

In contrast, addition of water to concentrated sulfuric acid results in a thin layer of water on top of the acid. Heat generated in this thin layer of water can boil, leading to the dispersal of a sulfuric acid aerosol, or worse, an explosion.

Preparation of solutions greater than 6 M (35%) in concentration is dangerous, unless the acid is added slowly enough to allow the mixture sufficient time to cool. Otherwise, the heat produced may be sufficient to boil the mixture. Efficient mechanical stirring and external cooling (such as an ice bath) are essential.

Reaction rates double for about every 10-degree Celsius increase in temperature. Therefore, the reaction will become more violent as dilution proceeds, unless the mixture is given time to cool. Adding acid to warm water will cause a violent reaction.

On a laboratory scale, sulfuric acid can be diluted by pouring concentrated acid onto crushed ice made from de-ionized water. The ice melts in an endothermic process while dissolving the acid. The amount of heat needed to melt the ice in this process is greater than the amount of heat evolved by dissolving the acid so the solution remains cold. After all the ice has melted, further dilution can take place using water.

Industrial hazards

Sulfuric acid is non-flammable.

The main occupational risks posed by this acid are skin contact leading to burns (see above) and the inhalation of aerosols. Exposure to aerosols at high concentrations leads to immediate and severe irritation of the eyes, respiratory tract and mucous membranes: this ceases rapidly after exposure, although there is a risk of subsequent pulmonary edema if tissue damage has been more severe. At lower concentrations, the most commonly reported symptom of chronic exposure to sulfuric acid aerosols is erosion of the teeth, found in virtually all studies: indications of possible chronic damage to the respiratory tract are inconclusive as of 1997. Repeated occupational exposure to sulfuric acid mists may increase the chance of lung cancer by up to 64 percent. In the United States, the permissible exposure limit (PEL) for sulfuric acid is fixed at 1 mg/m³: limits in other countries are similar. There have been reports of sulfuric acid ingestion leading to vitamin B12 deficiency with subacute combined degeneration. The spinal cord is most often affected in such cases, but the optic nerves may show demyelination, loss of axons and gliosis.

Legal restrictions

International commerce of sulfuric acid is controlled under the United Nations Convention Against Illicit Traffic in Narcotic Drugs and Psychotropic Substances, 1988, which lists sulfuric acid under Table II of the convention as a chemical frequently used in the illicit manufacture of narcotic drugs or psychotropic substances.

Catalysis

From Wikipedia, the free encyclopedia

https://en.wikipedia.org/wiki/Catalysis

A range of industrial catalysts in pellet form

An air filter that uses a low-temperature oxidation catalyst to convert carbon monoxide to less toxic carbon dioxide at room temperature. It can also remove formaldehyde from the air.

Catalysis (/kəˈtæləsɪs/) is the increase in rate of a chemical reaction due to an added substance known as a catalyst (/ˈkætəlɪst/). Catalysts are not consumed by the reaction and remain unchanged after it. If the reaction is rapid and the catalyst recycles quickly, very small amounts of catalyst often suffice; mixing, surface area, and temperature are important factors in reaction rate. Catalysts generally react with one or more reactants to form intermediates that subsequently give the final reaction product, in the process of regenerating the catalyst.

The rate increase occurs because the catalyst allows the reaction to occur by an alternative mechanism which may be much faster than the noncatalyzed mechanism. However the noncatalyzed mechanism does remain possible, so that the total rate (catalyzed plus noncatalyzed) can only increase in the presence of the catalyst and never decrease.

Catalysis may be classified as either homogeneous, whose components are dispersed in the same phase (usually gaseous or liquid) as the reactant, or heterogeneous, whose components are not in the same phase. Enzymes and other biocatalysts are often considered as a third category.

Catalysis is ubiquitous in chemical industry of all kinds. Estimates are that 90% of all commercially produced chemical products involve catalysts at some stage in the process of their manufacture.

The term "catalyst" is derived from Greek καταλύειν, kataluein, meaning "loosen" or "untie". The concept of catalysis was invented by chemist Elizabeth Fulhame, based on her novel work in oxidation-reduction experiments.

General principles

Example

An illustrative example is the effect of catalysts to speed the decomposition of hydrogen peroxide into water and oxygen:

2 H₂O₂ → 2 H₂O + O₂

This reaction proceeds because the reaction products are more stable than the starting compound, but this decomposition is so slow that hydrogen peroxide solutions are commercially available. In the presence of a catalyst such as manganese dioxide this reaction proceeds much more rapidly. This effect is readily seen by the effervescence of oxygen. The catalyst is not consumed in the reaction, and may be recovered unchanged and re-used indefinitely. Accordingly, manganese dioxide is said to catalyze this reaction. In living organisms, this reaction is catalyzed by enzymes (proteins that serve as catalysts) such as catalase.

Another example is the effect of catalysts on air pollution and reducing the amount of carbon monoxide. Development of active and selective catalysts for the conversion of carbon monoxide into desirable products is one of the most important roles of catalysts. Using catalysts for hydrogenation of carbon monoxide helps to remove this toxic gas and also attain useful materials.

Units

The SI derived unit for measuring the catalytic activity of a catalyst is the katal, which is quantified in moles per second. The productivity of a catalyst can be described by the turnover number (TON) and the catalytic activity by the turn over frequency (TOF), which is the TON per time unit. The biochemical equivalent is the enzyme unit. For more information on the efficiency of enzymatic catalysis, see the article on enzymes.

Catalytic reaction mechanisms

Main article: catalytic cycle

In general, chemical reactions occur faster in the presence of a catalyst because the catalyst provides an alternative reaction mechanism (reaction pathway) having a lower activation energy than the noncatalyzed mechanism. In catalyzed mechanisms, the catalyst is regenerated.

As a simple example occurring in the gas phase, the reaction 2 SO₂ + O₂ → 2 SO₃ can be catalyzed by adding nitric oxide. The reaction occurs in two steps:

2 NO + O₂ → 2 NO₂ (rate-determining)

NO₂ + SO₂ → NO + SO₃ (fast)

The NO catalyst is regenerated. The overall rate is the rate of the slow step

v=2k₁[NO]²[O₂].

An example of heterogeneous catalysis is the reaction of oxygen and hydrogen on the surface of titanium dioxide (TiO₂, or titania) to produce water. Scanning tunneling microscopy showed that the molecules undergo adsorption and dissociation. The dissociated, surface-bound O and H atoms diffuse together. The intermediate reaction states are: HO₂, H₂O₂, then H₃O₂ and the reaction product (water molecule dimers), after which the water molecule desorbs from the catalyst surface.

Reaction energetics

Generic potential energy diagram showing the effect of a catalyst in a hypothetical exothermic chemical reaction X + Y to give Z. The presence of the catalyst opens a different reaction pathway (shown in red) with lower activation energy. The final result and the overall thermodynamics are the same.

Catalysts enable pathways that differ from the uncatalyzed reactions. These pathways have lower activation energy. Consequently, more molecular collisions have the energy needed to reach the transition state. Hence, catalysts can enable reactions that would otherwise be blocked or slowed by a kinetic barrier. The catalyst may increase the reaction rate or selectivity, or enable the reaction at lower temperatures. This effect can be illustrated with an energy profile diagram.

In the catalyzed elementary reaction, catalysts do not change the extent of a reaction: they have no effect on the chemical equilibrium of a reaction. The ratio of the forward and the reverse reaction rates is unaffected (see also thermodynamics). The second law of thermodynamics describes why a catalyst does not change the chemical equilibrium of a reaction. Suppose there was such a catalyst that shifted an equilibrium. Introducing the catalyst to the system would result in a reaction to move to the new equilibrium, producing energy. Production of energy is a necessary result since reactions are spontaneous only if Gibbs free energy is produced, and if there is no energy barrier, there is no need for a catalyst. Then, removing the catalyst would also result in a reaction, producing energy; i.e. the addition and its reverse process, removal, would both produce energy. Thus, a catalyst that could change the equilibrium would be a perpetual motion machine, a contradiction to the laws of thermodynamics. Thus, catalysts do not alter the equilibrium constant. (A catalyst can however change the equilibrium concentrations by reacting in a subsequent step. It is then consumed as the reaction proceeds, and thus it is also a reactant. Illustrative is the base-catalyzed hydrolysis of esters, where the produced carboxylic acid immediately reacts with the base catalyst and thus the reaction equilibrium is shifted towards hydrolysis.)

The catalyst stabilizes the transition state more than it stabilizes the starting material. It decreases the kinetic barrier by decreasing the difference in energy between starting material and the transition state. It does not change the energy difference between starting materials and products (thermodynamic barrier), or the available energy (this is provided by the environment as heat or light).

Related concepts

Some so-called catalysts are really precatalysts, which convert to catalysts in the reaction. For example, Wilkinson's catalyst RhCl(PPh₃)₃ loses one triphenylphosphine ligand before entering the true catalytic cycle. Precatalysts are easier to store but are easily activated in situ. Because of this preactivation step, many catalytic reactions involve an induction period.

In cooperative catalysis, chemical species that improve catalytic activity are called cocatalysts or promoters.

In tandem catalysis two or more different catalysts are coupled in a one-pot reaction.

In autocatalysis, the catalyst is a product of the overall reaction, in contrast to all other types of catalysis considered in this article. The simplest example of autocatalysis is a reaction of type A + B → 2 B, in one or in several steps. The overall reaction is just A → B, so that B is a product. But since B is also a reactant, it may be present in the rate equation and affect the reaction rate. As the reaction proceeds, the concentration of B increases and can accelerate the reaction as a catalyst. In effect, the reaction accelerates itself or is autocatalyzed. An example is the hydrolysis of an ester such as aspirin to a carboxylic acid and an alcohol. In the absence of added acid catalysts, the carboxylic acid product catalyzes the hydrolysis.

Switchable catalysis refers to a type of catalysis where the catalyst can be toggled between different ground states possessing distinct reactivity, typically by applying an external stimulus. This ability to reversibly switch the catalyst allows for spatiotemporal control over catalytic activity and selectivity. The external stimuli used to switch the catalyst can include changes in temperature, pH, light, electric fields, or the addition of chemical agents.

A true catalyst can work in tandem with a sacrificial catalyst. The true catalyst is consumed in the elementary reaction and turned into a deactivated form. The sacrificial catalyst regenerates the true catalyst for another cycle. The sacrificial catalyst is consumed in the reaction, and as such, it is not really a catalyst, but a reagent. For example, osmium tetroxide (OsO₄) is a good reagent for dihydroxylation, but it is highly toxic and expensive. In Upjohn dihydroxylation, the sacrificial catalyst N-methylmorpholine N-oxide (NMMO) regenerates OsO₄, and only catalytic quantities of OsO₄ are needed.

Classification

Catalysis may be classified as either homogeneous or heterogeneous. A homogeneous catalysis is one whose components are dispersed in the same phase (usually gaseous or liquid) as the reactant's molecules. A heterogeneous catalysis is one where the reaction components are not in the same phase. Enzymes and other biocatalysts are often considered as a third category. Similar mechanistic principles apply to heterogeneous, homogeneous, and biocatalysis.

Heterogeneous catalysis

Main article: Heterogeneous catalysis

The microporous molecular structure of the zeolite ZSM-5 is exploited in catalysts used in refineries

Zeolites are extruded as pellets for easy handling in catalytic reactors.

Heterogeneous catalysts act in a different phase than the reactants. Most heterogeneous catalysts are solids that act on substrates in a liquid or gaseous reaction mixture. Important heterogeneous catalysts include zeolites, alumina, higher-order oxides, graphitic carbon, transition metal oxides, metals such as Raney nickel for hydrogenation, and vanadium(V) oxide for oxidation of sulfur dioxide into sulfur trioxide by the contact process.

Diverse mechanisms for reactions on surfaces are known, depending on how the adsorption takes place (Langmuir-Hinshelwood, Eley-Rideal, and Mars-van Krevelen). The total surface area of a solid has an important effect on the reaction rate. The smaller the catalyst particle size, the larger the surface area for a given mass of particles.

A heterogeneous catalyst has active sites, which are the atoms or crystal faces where the substrate actually binds. Active sites are atoms but are often described as a facet (edge, surface, step, etc.) of a solid. Most of the volume but also most of the surface of a heterogeneous catalyst may be catalytically inactive. Finding out the nature of the active site is technically challenging.

For example, the catalyst for the Haber process for the synthesis of ammonia from nitrogen and hydrogen is often described as iron. But detailed studies and many optimizations have led to catalysts that are mixtures of iron-potassium-calcium-aluminum-oxide. The reacting gases adsorb onto active sites on the iron particles. Once physically adsorbed, the reagents partially or wholly dissociate and form new bonds. In this way the particularly strong triple bond in nitrogen is broken, which would be extremely uncommon in the gas phase due to its high activation energy. Thus, the activation energy of the overall reaction is lowered, and the rate of reaction increases. Another place where a heterogeneous catalyst is applied is in the oxidation of sulfur dioxide on vanadium(V) oxide for the production of sulfuric acid. Many heterogeneous catalysts are in fact nanomaterials.

Heterogeneous catalysts are typically "supported", which means that the catalyst is dispersed on a second material that enhances the effectiveness or minimizes its cost. Supports prevent or minimize agglomeration and sintering of small catalyst particles, exposing more surface area, thus catalysts have a higher specific activity (per gram) on support. Sometimes the support is merely a surface on which the catalyst is spread to increase the surface area. More often, the support and the catalyst interact, affecting the catalytic reaction. Supports can also be used in nanoparticle synthesis by providing sites for individual molecules of catalyst to chemically bind. Supports are porous materials with a high surface area, most commonly alumina, zeolites, or various kinds of activated carbon. Specialized supports include silicon dioxide, titanium dioxide, calcium carbonate, and barium sulfate.

Electrocatalysts

Main article: Electrocatalyst

In the context of electrochemistry, specifically in fuel cell engineering, various metal-containing catalysts are used to enhance the rates of the half reactions that comprise the fuel cell. One common type of fuel cell electrocatalyst is based upon nanoparticles of platinum that are supported on slightly larger carbon particles. When in contact with one of the electrodes in a fuel cell, this platinum increases the rate of oxygen reduction either to water or to hydroxide or hydrogen peroxide.

Homogeneous catalysis

Main article: Homogeneous catalysis

Homogeneous catalysts function in the same phase as the reactants. Typically homogeneous catalysts are dissolved in a solvent with the substrates. One example of homogeneous catalysis involves the influence of H⁺ on the esterification of carboxylic acids, such as the formation of methyl acetate from acetic acid and methanol. High-volume processes requiring a homogeneous catalyst include hydroformylation, hydrosilylation, hydrocyanation. For inorganic chemists, homogeneous catalysis is often synonymous with organometallic catalysts. Many homogeneous catalysts are however not organometallic, illustrated by the use of cobalt salts that catalyze the oxidation of p-xylene to terephthalic acid.

Organocatalysis

Main article: Organocatalysis

Whereas transition metals sometimes attract most of the attention in the study of catalysis, small organic molecules without metals can also exhibit catalytic properties, as is apparent from the fact that many enzymes lack transition metals. Typically, organic catalysts require a higher loading (amount of catalyst per unit amount of reactant, expressed in mol% amount of substance) than transition metal(-ion)-based catalysts, but these catalysts are usually commercially available in bulk, helping to lower costs. In the early 2000s, these organocatalysts were considered "new generation" and are competitive to traditional metal(-ion)-containing catalysts.

Organocatalysts are supposed to operate akin to metal-free enzymes utilizing, e.g., noncovalent interactions such as hydrogen bonding. The discipline organocatalysis is divided into the application of covalent (e.g., proline, DMAP) and noncovalent (e.g., thiourea organocatalysis) organocatalysts referring to the preferred catalyst-substrate binding and interaction, respectively. The Nobel Prize in Chemistry 2021 was awarded jointly to Benjamin List and David W.C. MacMillan "for the development of asymmetric organocatalysis."

Photocatalysts

Main article: Photocatalysis

Photocatalysis is the phenomenon where the catalyst can receive light to generate an excited state that effect redox reactions. Singlet oxygen is usually produced by photocatalysis. Photocatalysts are components of dye-sensitized solar cells.

Enzymes and biocatalysts

Main article: Enzyme catalysis

In biology, enzymes are protein-based catalysts in metabolism and catabolism. Most biocatalysts are enzymes, but other nonprotein-based classes of biomolecules also exhibit catalytic properties including ribozymes, and synthetic deoxyribozymes.

Biocatalysts can be thought of as an intermediate between homogeneous and heterogeneous catalysts, although strictly speaking soluble enzymes are homogeneous catalysts and membrane-bound enzymes are heterogeneous. Several factors affect the activity of enzymes (and other catalysts) including temperature, pH, the concentration of enzymes, substrate, and products. A particularly important reagent in enzymatic reactions is water, which is the product of many bond-forming reactions and a reactant in many bond-breaking processes.

In biocatalysis, enzymes are employed to prepare many commodity chemicals including high-fructose corn syrup and acrylamide.

Some monoclonal antibodies whose binding target is a stable molecule that resembles the transition state of a chemical reaction can function as weak catalysts for that chemical reaction by lowering its activation energy. Such catalytic antibodies are sometimes called "abzymes".

Significance

Left: Partially caramelized cube sugar, Right: burning cube sugar with ash as catalyst

Estimates are that 90% of all commercially produced chemical products involve catalysts at some stage in the process of their manufacture. In 2005, catalytic processes generated about $900 billion in products worldwide. Catalysis is so pervasive that subareas are not readily classified. Some areas of particular concentration are surveyed below.

Energy processing

Petroleum refining makes intensive use of catalysis for alkylation, catalytic cracking (breaking long-chain hydrocarbons into smaller pieces), naphtha reforming and steam reforming (conversion of hydrocarbons into synthesis gas). Even the exhaust from the burning of fossil fuels is treated via catalysis: Catalytic converters, typically composed of platinum and rhodium, break down some of the more harmful byproducts of automobile exhaust.

2 CO + 2 NO → 2 CO₂ + N₂

With regard to synthetic fuels, an old but still important process is the Fischer–Tropsch synthesis of hydrocarbons from synthesis gas, which itself is processed via water-gas shift reactions, catalyzed by iron. The Sabatier reaction produces methane from carbon dioxide and hydrogen. Biodiesel and related biofuels require processing via both inorganic and biocatalysts.

Fuel cells rely on catalysts for both the anodic and cathodic reactions.

Catalytic heaters generate flameless heat from a supply of combustible fuel.

Bulk chemicals

Typical vanadium pentoxide catalyst used in sulfuric acid production for an intermediate reaction to convert sulfur dioxide to sulfur trioxide.

Some of the largest-scale chemicals are produced via catalytic oxidation, often using oxygen. Examples include nitric acid (from ammonia), sulfuric acid (from sulfur dioxide to sulfur trioxide by the contact process), terephthalic acid from p-xylene, acrylic acid from propylene or propane and acrylonitrile from propane and ammonia.

The production of ammonia is one of the largest-scale and most energy-intensive processes. In the Haber process nitrogen is combined with hydrogen over an iron oxide catalyst. Methanol is prepared from carbon monoxide or carbon dioxide but using copper-zinc catalysts.

Bulk polymers derived from ethylene and propylene are often prepared using Ziegler–Natta catalyst. Polyesters, polyamides, and isocyanates are derived via acid–base catalysis.

Most carbonylation processes require metal catalysts, examples include the Monsanto acetic acid process and hydroformylation.

Fine chemicals

Many fine chemicals are prepared via catalysis; methods include those of heavy industry as well as more specialized processes that would be prohibitively expensive on a large scale. Examples include the Heck reaction, and Friedel–Crafts reactions. Because most bioactive compounds are chiral, many pharmaceuticals are produced by enantioselective catalysis (catalytic asymmetric synthesis). (R)-1,2-Propandiol, the precursor to the antibacterial levofloxacin, can be synthesized efficiently from hydroxyacetone by using catalysts based on BINAP-ruthenium complexes, in Noyori asymmetric hydrogenation:

Food processing

One of the most obvious applications of catalysis is the hydrogenation (reaction with hydrogen gas) of fats using nickel catalyst to produce margarine. Many other foodstuffs are prepared via biocatalysis (see below).

Environment

Catalysis affects the environment by increasing the efficiency of industrial processes, but catalysis also plays a direct role in the environment. A notable example is the catalytic role of chlorine free radicals in the breakdown of ozone. These radicals are formed by the action of ultraviolet radiation on chlorofluorocarbons (CFCs).

Cl^· + O₃ → ClO^· + O₂

ClO^· + O^· → Cl^· + O₂

History

The term "catalyst", broadly defined as anything that increases the rate of a process, is derived from Greek καταλύειν, meaning "to annul", or "to untie", or "to pick up". The concept of catalysis was invented by chemist Elizabeth Fulhame and described in a 1794 book, based on her novel work in oxidation–reduction reactions. The first chemical reaction in organic chemistry that knowingly used a catalyst was studied in 1811 by Gottlieb Kirchhoff, who discovered the acid-catalyzed conversion of starch to glucose. The term catalysis was later used by Jöns Jakob Berzelius in 1835 to describe reactions that are accelerated by substances that remain unchanged after the reaction. Fulhame, who predated Berzelius, did work with water as opposed to metals in her reduction experiments. Other 18th century chemists who worked in catalysis were Eilhard Mitscherlich who referred to it as contact processes, and Johann Wolfgang Döbereiner who spoke of contact action. He developed Döbereiner's lamp, a lighter based on hydrogen and a platinum sponge, which became a commercial success in the 1820s that lives on today. Humphry Davy discovered the use of platinum in catalysis. In the 1880s, Wilhelm Ostwald at Leipzig University started a systematic investigation into reactions that were catalyzed by the presence of acids and bases, and found that chemical reactions occur at finite rates and that these rates can be used to determine the strengths of acids and bases. For this work, Ostwald was awarded the 1909 Nobel Prize in Chemistry. Vladimir Ipatieff performed some of the earliest industrial scale reactions, including the discovery and commercialization of oligomerization and the development of catalysts for hydrogenation.

Inhibitors, poisons, and promoters

An added substance that lowers the rate is called a reaction inhibitor if reversible and catalyst poisons if irreversible. Promoters are substances that increase the catalytic activity, even though they are not catalysts by themselves.

Inhibitors are sometimes referred to as "negative catalysts" since they decrease the reaction rate. However the term inhibitor is preferred since they do not work by introducing a reaction path with higher activation energy; this would not lower the rate since the reaction would continue to occur by the noncatalyzed path. Instead, they act either by deactivating catalysts or by removing reaction intermediates such as free radicals. In heterogeneous catalysis, coking inhibits the catalyst, which becomes covered by polymeric side products.

The inhibitor may modify selectivity in addition to rate. For instance, in the hydrogenation of alkynes to alkenes, a palladium (Pd) catalyst partly "poisoned" with lead(II) acetate (Pb(CH₃CO₂)₂) can be used (Lindlar catalyst). Without the deactivation of the catalyst, the alkene produced would be further hydrogenated to alkane.

The inhibitor can produce this effect by, e.g., selectively poisoning only certain types of active sites. Another mechanism is the modification of surface geometry. For instance, in hydrogenation operations, large planes of metal surface function as sites of hydrogenolysis catalysis while sites catalyzing hydrogenation of unsaturates are smaller. Thus, a poison that covers the surface randomly will tend to lower the number of uncontaminated large planes but leave proportionally smaller sites free, thus changing the hydrogenation vs. hydrogenolysis selectivity. Many other mechanisms are also possible.

Promoters can cover up the surface to prevent the production of a mat of coke, or even actively remove such material (e.g., rhenium on platinum in platforming). They can aid the dispersion of the catalytic material or bind to reagents.

Prebiotic catalysis in the origin of life

Life is based on an interplay between information processing and catalytic activity carried out by biological polymers. A possible evolutionary pathway for the emergence of catalytic functions in prebiotic information coding polymers was proposed. It has also been proposed that life emerged as an RNA-protein system in which the two components cross catalyzed the formation of each other.

Bioorthogonal chemistry

From Wikipedia, the free encyclopedia
https://en.wikipedia.org/wiki/Bioorthogonal_chemistry

The term bioorthogonal chemistry refers to any chemical reaction that can occur inside of living systems without interfering with native biochemical processes. The term was coined by Carolyn R. Bertozzi in 2003. Since its introduction, the concept of the bioorthogonal reaction has enabled the study of biomolecules such as glycans, proteins, and lipids in real time in living systems without cellular toxicity. A number of chemical ligation strategies have been developed that fulfill the requirements of bioorthogonality, including the 1,3-dipolar cycloaddition between azides and cyclooctynes (also termed copper-free click chemistry), between nitrones and cyclooctynes, oxime/hydrazone formation from aldehydes and ketones, the tetrazine ligation, the isocyanide-based click reaction, and most recently, the quadricyclane ligation.

Shown here is a bioorthogonal ligation between biomolecule X and reactive partner Y. To be considered bioorthogonal, these reactive partners cannot perturb other chemical functionality naturally found within the cell.

The use of bioorthogonal chemistry typically proceeds in two steps. First, a cellular substrate is modified with a bioorthogonal functional group (chemical reporter) and introduced to the cell; substrates include metabolites, enzyme inhibitors, etc. The chemical reporter must not alter the structure of the substrate dramatically to avoid affecting its bioactivity. Secondly, a probe containing the complementary functional group is introduced to react and label the substrate.

Although effective bioorthogonal reactions such as copper-free click chemistry have been developed, development of new reactions continues to generate orthogonal methods for labeling to allow multiple methods of labeling to be used in the same biosystems. Carolyn R. Bertozzi was awarded the Nobel Prize in Chemistry in 2022 for her development of click chemistry and bioorthogonal chemistry.

Etymology

The word bioorthogonal comes from Greek bio- "living" and orthogōnios "right-angled". Thus literally a reaction that goes perpendicular to a living system, thus not disturbing it.

Requirements for bioorthogonality

To be considered bioorthogonal, a reaction must fulfill a number of requirements:

• Selectivity: The reaction must be selective between endogenous functional groups to avoid side reactions with biological compounds
• Biological inertness: Reactive partners and resulting linkage should not possess any mode of reactivity capable of disrupting the native chemical functionality of the organism under study.
• Chemical inertness: The covalent link should be strong and inert to biological reactions.
• Kinetics: The reaction must be rapid so that covalent ligation is achieved prior to probe metabolism and clearance. The reaction must be fast, on the time scale of cellular processes (minutes) to prevent competition in reactions which may diminish the small signals of less abundant species. Rapid reactions also offer a fast response, necessary in order to accurately track dynamic processes.
• Reaction biocompatibility: Reactions have to be non-toxic and must function in biological conditions taking into account pH, aqueous environments, and temperature. Pharmacokinetics are a growing concern as bioorthogonal chemistry expands to live animal models.
• Accessible engineering: The chemical reporter must be capable of incorporation into biomolecules via some form of metabolic or protein engineering. Optimally, one of the functional groups is also very small so that it does not disturb native behavior.

Staudinger ligation

The Staudinger ligation is a reaction developed by the Bertozzi group in 2000 that is based on the classic Staudinger reaction of azides with triarylphosphines. It launched the field of bioorthogonal chemistry as the first reaction with completely abiotic functional groups although it is no longer as widely used. The Staudinger ligation has been used in both live cells and live mice.

Bioorthogonality

The azide can act as a soft electrophile that prefers soft nucleophiles such as phosphines. This is in contrast to most biological nucleophiles which are typically hard nucleophiles. The reaction proceeds selectively under water-tolerant conditions to produce a stable product.

Phosphines are completely absent from living systems and do not reduce disulfide bonds despite mild reduction potential. Azides had been shown to be biocompatible in FDA-approved drugs such as azidothymidine and through other uses as cross linkers. Additionally, their small size allows them to be easily incorporated into biomolecules through cellular metabolic pathways.

Mechanism

Classic Staudinger reaction

The nucleophilic phosphine attacks the azide at the electrophilic terminal nitrogen. Through a four-membered transition state, N₂ is lost to form an aza-ylide. The unstable ylide is hydrolyzed to form phosphine oxide and a primary amine. However, this reaction is not immediately bioorthogonal because hydrolysis breaks the covalent bond in the aza-ylide.

Staudinger ligation

The reaction was modified to include an ester group ortho to the phosphorus atom on one of the aryl rings to direct the aza-ylide through a new path of reactivity in order to outcompete immediate hydrolysis by positioning the ester to increase local concentration. The initial nucleophilic attack on the azide is the rate-limiting step. The ylide reacts with the electrophilic ester trap through intramolecular cyclization to form a five-membered ring. This ring undergoes hydrolysis to form a stable amide bond.

Limitations

The phosphine reagents slowly undergo air oxidation in living systems. Additionally, it is likely that they are metabolized in vitro by cytochrome P450 enzymes.

The kinetics of the reactions are slow with second order rate constants around 0.0020 M⁻¹•s⁻¹. Attempts to increase nucleophilic attack rates by adding electron-donating groups to the phosphines improved kinetics, but also increased the rate of air oxidation.

The poor kinetics require that high concentrations of the phosphine be used which leads to problems with high background signal in imaging applications. Attempts have been made to combat the problem of high background through the development of a fluorogenic phosphine reagents based on fluorescein and luciferin, but the intrinsic kinetics remain a limitation.

Copper-free click chemistry

Main article: Copper-free click chemistry

Copper-free click chemistry is a bioorthogonal reaction first developed by Carolyn Bertozzi as an activated variant of an azide alkyne Huisgen cycloaddition, based on the work by Karl Barry Sharpless et al. Unlike CuAAC, Cu-free click chemistry has been modified to be bioorthogonal by eliminating a cytotoxic copper catalyst, allowing reaction to proceed quickly and without live cell toxicity. Instead of copper, the reaction is a strain-promoted alkyne-azide cycloaddition (SPAAC). It was developed as a faster alternative to the Staudinger ligation, with the first generations reacting over sixty times faster. The bioorthogonality of the reaction has allowed the Cu-free click reaction to be applied within cultured cells, live zebrafish, and mice.

Copper toxicity

The classic copper-catalyzed azide-alkyne cycloaddition has been an extremely fast and effective click reaction for bioconjugation, but it is not suitable for use in live cells due to the toxicity of Cu(I) ions. Toxicity is due to oxidative damage from reactive oxygen species formed by the copper catalysts. Copper complexes have also been found to induce changes in cellular metabolism and are taken up by cells.

There has been some development of ligands to prevent biomolecule damage and facilitate removal in in vitro applications. However, it has been found that different ligand environments of complexes can still affect metabolism and uptake, introducing an unwelcome perturbation in cellular function.

Bioorthogonality

The azide group is particularly bioorthogonal because it is extremely small (favorable for cell permeability and avoids perturbations), metabolically stable, and does not naturally exist in cells and thus has no competing biological side reactions. Although azides are not the most reactive 1,3-dipole available for reaction, they are preferred for their relative lack of side reactions and stability in typical synthetic conditions. The alkyne is not as small, but it still has the stability and orthogonality necessary for in vivo labeling. Cyclooctynes are traditionally the most common cycloalkyne for labeling studies, as they are the smallest stable alkyne ring.

Mechanism

The reaction proceeds as a standard 1,3-dipolar cycloaddition, a type of asynchronous, concerted pericyclic shift. The ambivalent nature of the 1,3-dipole should make the identification of an electrophilic or nucleophilic center on the azide impossible such that the direction of the cyclic electron flow is meaningless. [p] However, computation has shown that the electron distribution amongst nitrogens causes the innermost nitrogen atom to bear the greatest negative charge.

Regioselectivity

Although the reaction produces a regioisomeric mixture of triazoles, the lack of regioselectivity in the reaction is not a major concern for most current applications. More regiospecific and less bioorthogonal requirements are best served by copper-catalyzed Huisgen cycloaddition, especially given the synthetic difficulty (compared to the addition of a terminal alkyne) of synthesizing a strained cyclooctyne.

Development of cyclooctynes

Cyclooctyne	Second order rate constant (M−1s−1)
OCT	0.0024
ALO	0.0013
MOFO	0.0043
DIFO	0.076
DIBO	0.057
BARAC	0.96
DIBAC (ADIBO)	0.31
DIMAC	0.0030

OCT was the first cyclooctyne developed for Cu-free click chemistry. While linear alkynes are unreactive at physiological temperatures, OCT was able readily react with azides in biological conditions while showing no toxicity. However, it was poorly water-soluble, and the kinetics were barely improved over the Staudinger ligation. ALO (aryl-less octyne) was developed to improve water solubility, but it still had poor kinetics.

Monofluorinated (MOFO) and difluorinated (DIFO) cyclooctynes were created to increase the rate through the addition of electron-withdrawing fluorine substituents at the propargylic position. Fluorine is a good electron-withdrawing group in terms of synthetic accessibility and biological inertness. In particular, it cannot form an electrophilic Michael acceptor that may side-react with biological nucleophiles. DIBO (dibenzocyclooctyne) was developed as a fusion to two aryl rings, resulting in very high strain and a decrease in distortion energies. It was proposed that biaryl substitution increases ring strain and provides conjugation with the alkyne to improve reactivity. Although calculations have predicted that mono-aryl substitution would provide an optimal balance between steric clash (with azide molecule) and strain, monoarylated products have been shown to be unstable.

BARAC (biarylazacyclooctynone) followed with the addition of an amide bond which adds an sp²-like center to increase rate by distortion. Amide resonance contributes additional strain without creating additional unsaturation which would lead to an unstable molecule. Additionally, the addition of a heteroatom into the cyclooctyne ring improves both solubility and pharmacokinetics of the molecule. BARAC has sufficient rate (and sensitivity) to the extent that washing away excess probe is unnecessary to reduce background. This makes it extremely useful in situations where washing is impossible as in real-time imaging or whole animal imaging. Although BARAC is extremely useful, its low stability requires that it must be stored at 0 °C, protected from light and oxygen.

The synthesis was designed by the Bertozzi group as a modular route to facilitate future modifications in SAR analysis. The first step is Fischer indole synthesis. The product is alkylated with allyl bromide as a handle for future probe attachment; TMS is then added. Oxidation opens the central rings to form a cyclic amide. The ketone is treated as an enolate to add a triflate group. Reaction of the terminal alkene generates a linker for conjugation to a molecule. The final reaction with CsF introduces the strained alkyne at the last step.

Further adjustments variations on BARAC to produce DIBAC/ADIBO were performed to add distal ring strain and reduce sterics around the alkyne to further increase reactivity. Keto-DIBO, in which the hydroxyl group has been converted to a ketone, has a three-fold increase in rate due to a change in ring conformation. Attempts to make a difluorobenzocyclooctyne (DIFBO) were unsuccessful due to the instability.

Problems with DIFO with in vivo mouse studies illustrate the difficulty of producing bioorthogonal reactions. Although DIFO was extremely reactive in the labeling of cells, it performed poorly in mouse studies due to binding with serum albumin. Hydrophobicity of the cyclooctyne promotes sequestration by membranes and serum proteins, reducing bioavailable concentrations. In response, DIMAC (dimethoxyazacyclooctyne) was developed to increase water solubility, polarity, and pharmacokinetics, although efforts in bioorthogonal labeling of mouse models is still in development.

Reactivity

Computational efforts have been vital in explaining the thermodynamics and kinetics of these cycloaddition reactions which has played a vital role in continuing to improve the reaction. There are two methods for activating alkynes without sacrificing stability: decrease transition state energy or decrease reactant stability.

The red arrow shows the direction of energy change. Black arrows show the difference in activation energy before and after the effects.

Decreasing reactant stability: Houk has proposed that differences in the energy (E_d ^‡) required to distort the azide and alkyne into the transition state geometries control the barrier heights for the reaction. The activation energy (E ^‡) is the sum of destabilizing distortions and stabilizing interactions (E_i ^‡). The most significant distortion is in the azide functional group with lesser contribution of alkyne distortion. However, it is only the cyclooctyne that can be easily modified for higher reactivity. Calculated barriers of reaction for phenyl azide and acetylene (16.2 kcal/mol) versus cyclooctyne (8.0 kcal/mol) results in a predicted rate increase of 10⁶. The cyclooctyne requires less distortion energy (1.4 kcal/mol versus 4.6 kcal/mol) resulting in a lower activation energy despite smaller interaction energy.

Relationship between activation energy, distortion energy, and interaction energy

Decreasing transition state energy: Electron withdrawing groups such as fluorine increase rate by decreasing LUMO energy and the HOMO-LUMO gap. This leads to a greater charge transfer from the azide to the fluorinated cyclooctyne in the transition state, increasing interaction energy (lower negative value) and overall activation energy. The lowering of the LUMO is the result of hyperconjugation between alkyne π donor orbitals and CF σ* acceptors. These interactions provide stabilization primarily in the transition state as a result of increased donor/acceptor abilities of the bonds as they distort. NBO calculations have shown that transition state distortion increases the interaction energy by 2.8 kcal/mol.

The hyperconjugation between out-of-plane π bonds is greater because the in-plane π bonds are poorly aligned. However, transition state bending allows the in-plane π bonds to have a more antiperiplanar arrangement that facilitates interaction. Additional hyperconjugative interaction energy stabilization is achieved through an increase in the electronic population of the σ* due to the forming CN bond. Negative hyperconjugation with the σ* CF bonds enhances this stabilizing interaction.

Regioselectivity

Although regioselectivity is not a great issue in the current imaging applications of copper-free click chemistry, it is an issue that prevents future applications in fields such as drug design or peptidomimetics.

Currently most cyclooctynes react to form regioisomeric mixtures. [m] Computation analysis has found that while gas phase regioselectivity is calculated to favor 1,5 addition over 1,4 addition by up to 2.9 kcal/mol in activation energy, solvation corrections result in the same energy barriers for both regioisomers. While the 1,4 isomer in the cycloaddition of DIFO is disfavored by its larger dipole moment, solvation stabilizes it more strongly than the 1,5 isomer, eroding regioselectivity.

Symmetrical cyclooctynes such as BCN (bicyclo[6.1.0]nonyne) form a single regioisomer upon cycloaddition and may serve to address this problem in the future.

Applications

The most widespread application of copper-free click chemistry is in biological imaging in live cells or animals using an azide-tagged biomolecule and a cyclooctyne bearing an imaging agent.

Fluorescent keto and oxime variants of DIBO are used in fluoro-switch click reactions in which the fluorescence of the cyclooctyne is quenched by the triazole that forms in the reaction. On the other hand, coumarin-conjugated cyclooctynes such as coumBARAC have been developed such that the alkyne suppresses fluorescence while triazole formation increases the fluorescence quantum yield by ten-fold.

coumBARAC fluorescence increases with reaction

Spatial and temporal control of substrate labeling has been investigated using photoactivatable cyclooctynes. This allows equilibration of the alkyne prior to reaction in order to reduce artifacts as a result of concentration gradients. Masked cyclooctynes are unable to react with azides in the dark but become reactive alkynes upon irradiation with light.

Copper-free click chemistry is being explored for use in synthesizing PET imaging agents which must be made quickly with high purity and yield in order to minimize isotopic decay before the compounds can be administered. Both the high rate constants and the bioorthogonality of SPAAC are amenable to PET chemistry.

Other bioorthogonal reactions

Nitrone dipole cycloaddition

Copper-free click chemistry has been adapted to use nitrones as the 1,3-dipole rather than azides and has been used in the modification of peptides.

This cycloaddition between a nitrone and a cyclooctyne forms N-alkylated isoxazolines. The reaction rate is enhanced by water and is extremely fast with second order rate constants ranging from 12 to 32 M⁻¹•s⁻¹, depending on the substitution of the nitrone. Although the reaction is extremely fast, it faces problems in incorporating the nitrone into biomolecules through metabolic labeling. Labeling has only been achieved through post-translational peptide modification.

Norbornene cycloaddition

1,3 dipolar cycloadditions have been developed as a bioorthogonal reaction using a nitrile oxide as a 1,3-dipole and a norbornene as a dipolarophile. Its primary use has been in labeling DNA and RNA in automated oligonucleotide synthesizers, and polymer crosslinking in the presence of living cells.

Norbornenes were selected as dipolarophiles due to their balance between strain-promoted reactivity and stability. The drawbacks of this reaction include the cross-reactivity of the nitrile oxide due to strong electrophilicity and slow reaction kinetics.

Oxanorbornadiene cycloaddition

The oxanorbornadiene cycloaddition is a 1,3-dipolar cycloaddition followed by a retro-Diels Alder reaction to generate a triazole-linked conjugate with the elimination of a furan molecule. Preliminary work has established its usefulness in peptide labeling experiments, and it has also been used in the generation of SPECT imaging compounds. More recently, the use of an oxanorbornadiene was described in a catalyst-free room temperature "iClick" reaction, in which a model amino acid is linked to the metal moiety, in a novel approach to bioorthogonal reactions.

Ring strain and electron deficiency in the oxanorbornadiene increase reactivity towards the cycloaddition rate-limiting step. The retro-Diels Alder reaction occurs quickly afterwards to form the stable 1,2,3 triazole. Problems include poor tolerance for substituents which may change electronics of the oxanorbornadiene and low rates (second order rate constants on the order of 10⁻⁴).

Tetrazine ligation

The tetrazine ligation is the reaction of a trans-cyclooctene and an s-tetrazine in an inverse-demand Diels Alder reaction followed by a retro-Diels Alder reaction to eliminate nitrogen gas. The reaction is extremely rapid with a second order rate constant of 2000 M⁻¹–s⁻¹ (in 9:1 methanol/water) allowing modifications of biomolecules at extremely low concentrations.

Based on computational work by Bach, the strain energy for Z-cyclooctenes is 7.0 kcal/mol compared to 12.4 kcal/mol for cyclooctane due to a loss of two transannular interactions. E-cyclooctene has a highly twisted double bond resulting in a strain energy of 17.9 kcal/mol. As such, the highly strained trans-cyclooctene is used as a reactive dienophile. The diene is a 3,6-diaryl-s-tetrazine which has been substituted in order to resist immediate reaction with water. The reaction proceeds through an initial cycloaddition followed by a reverse Diels Alder to eliminate N₂ and prevent reversibility of the reaction.

Not only is the reaction tolerant of water, but it has been found that the rate increases in aqueous media. Reactions have also been performed using norbornenes as dienophiles at second order rates on the order of 1 M⁻¹•s⁻¹ in aqueous media. The reaction has been applied in labeling live cells and polymer coupling.

[4+1] Cycloaddition

This isocyanide click reaction is a [4+1] cycloaddition followed by a retro-Diels Alder elimination of N₂.

The reaction proceeds with an initial [4+1] cycloaddition followed by a reversion to eliminate a thermodynamic sink and prevent reversibility. This product is stable if a tertiary amine or isocyanopropanoate is used. If a secondary or primary isocyanide is used, the produce will form an imine which is quickly hydrolyzed.

Isocyanide is a favored chemical reporter due to its small size, stability, non-toxicity, and absence in mammalian systems. However, the reaction is slow, with second order rate constants on the order of 10⁻² M⁻¹•s⁻¹.

Tetrazole photoclick chemistry

Photoclick chemistry utilizes a photoinduced cycloelimination to release N₂. This generates a short-lived 1,3 nitrile imine intermediate via the loss of nitrogen gas, which undergoes a 1,3-dipolar cycloaddition with an alkene to generate pyrazoline cycloadducts.

Photoinduction takes place with a brief exposure to light (wavelength is tetrazole-dependent) to minimize photodamage to cells. The reaction is enhanced in aqueous conditions and generates a single regioisomer.

The transient nitrile imine is highly reactive for 1,3-dipolar cycloaddition due to a bent structure which reduces distortion energy. Substitution with electron-donating groups on phenyl rings increases the HOMO energy, when placed on the 1,3 nitrile imine and increases the rate of reaction.

Advantages of this approach include the ability to spatially or temporally control reaction and the ability to incorporate both alkenes and tetrazoles into biomolecules using simple biological methods such as genetic encoding. Additionally, the tetrazole can be designed to be fluorogenic in order to monitor progress of the reaction.

Quadricyclane ligation

The quadricyclane ligation utilizes a highly strained quadricyclane to undergo [2+2+2] cycloaddition with π systems.

Quadricyclane is abiotic, unreactive with biomolecules (due to complete saturation), relatively small, and highly strained (~80 kcal/mol). However, it is highly stable at room temperature and in aqueous conditions at physiological pH. It is selectively able to react with electron-poor π systems but not simple alkenes, alkynes, or cyclooctynes.

Bis(dithiobenzil)nickel(II) was chosen as a reaction partner out of a candidate screen based on reactivity. To prevent light-induced reversion to norbornadiene, diethyldithiocarbamate is added to chelate the nickel in the product.

These reactions are enhanced by aqueous conditions with a second order rate constant of 0.25 M⁻¹•s⁻¹. Of particular interest is that it has been proven to be bioorthogonal to both oxime formation and copper-free click chemistry.

Uses

Bioorthogonal chemistry is an attractive tool for pretargeting experiments in nuclear imaging and radiotherapy.