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Sunday, May 19, 2019

Bat

From Wikipedia, the free encyclopedia

Bat
Temporal range: EocenePresent
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Common vampire batGreater horseshoe batGreater short-nosed fruit batEgyptian fruit batMexican free-tailed batGreater mouse-eared batWikipedia-Bats-001-v01.jpg
Scientific classification
Kingdom: Animalia
Phylum: Chordata
Class: Mammalia
Clade: Scrotifera
Order: Chiroptera
Blumenbach, 1779
Suborders
(traditional):
(recent):
Bat range.png
Worldwide distribution of bat species

Bats are mammals of the order Chiroptera; with their forelimbs adapted as wings, they are the only mammals naturally capable of true and sustained flight. Bats are more manoeuvrable than birds, flying with their very long spread-out digits covered with a thin membrane or patagium. The smallest bat, and arguably the smallest extant mammal, is Kitti's hog-nosed bat, which is 29–34 mm (1.14–1.34 in) in length, 15 cm (5.91 in) across the wings and 2–2.6 g (0.07–0.09 oz) in mass. The largest bats are the flying foxes and the giant golden-crowned flying fox, Acerodon jubatus, which can weigh 1.6 kg (4 lb) and have a wingspan of 1.7 m (5 ft 7 in).

The second largest order of mammals, bats comprise about 20% of all classified mammal species worldwide, with over 1,200 species. These were traditionally divided into two suborders: the largely fruit-eating megabats, and the echolocating microbats. But more recent evidence has supported dividing the order into Yinpterochiroptera and Yangochiroptera, with megabats as members of the former along with several species of microbats. Many bats are insectivores, and most of the rest are frugivores (fruit-eaters). A few species feed on animals other than insects; for example, the vampire bats feed on blood. Most bats are nocturnal, and many roost in caves or other refuges; it is uncertain whether bats have these behaviours to escape predators. Bats are present throughout the world, with the exception of extremely cold regions. They are important in their ecosystems for pollinating flowers and dispersing seeds; many tropical plants depend entirely on bats for these services.

Bats provide humans with some benefits, at the cost of some threats. Bat dung has been mined as guano from caves and used as fertiliser. Bats consume insect pests, reducing the need for pesticides. They are sometimes numerous enough to serve as tourist attractions, and are used as food across Asia and the Pacific Rim. They are natural reservoirs of many pathogens, such as rabies; and since they are highly mobile, social, and long-lived, they can readily spread disease. In many cultures, bats are popularly associated with darkness, malevolence, witchcraft, vampires, and death.

Etymology

An older English name for bats is flittermouse, which matches their name in other Germanic languages (for example German Fledermaus and Swedish fladdermus), related to the fluttering of wings. Middle English had bakke, most likely cognate with Old Swedish natbakka ("night-bat"), which may have undergone a shift from -k- to -t- (to Modern English bat) influenced by Latin blatta, "moth, nocturnal insect". The word "bat" was probably first used in the early 1570s. The name "Chiroptera" derives from Ancient Greek: χείρcheir, "hand" and πτερόν – pteron, "wing".

Phylogeny and taxonomy

The early Eocene fossil microchiropteran Icaronycteris, from the Green River Formation

Evolution

The delicate skeletons of bats do not fossilise well, and it is estimated that only 12% of bat genera that lived have been found in the fossil record. Most of the oldest known bat fossils were already very similar to modern microbats, such as Archaeopteropus (32 million years ago). The extinct bats Palaeochiropteryx tupaiodon (48 million years ago) and Hassianycteris kumari (55 million years ago) are the first fossil mammals whose colouration has been discovered: both were reddish-brown.

Bats were formerly grouped in the superorder Archonta, along with the treeshrews (Scandentia), colugos (Dermoptera), and primates. Modern genetic evidence now places bats in the superorder Laurasiatheria, with its sister taxon as Fereuungulata, which includes carnivorans, pangolins, odd-toed ungulates, even-toed ungulates, and cetaceans. One study places Chiroptera as a sister taxon to odd-toed ungulates (Perissodactyla).

The phylogenetic relationships of the different groups of bats have been the subject of much debate. The traditional subdivision into Megachiroptera and Microchiroptera reflected the view that these groups of bats had evolved independently of each other for a long time, from a common ancestor already capable of flight. This hypothesis recognised differences between microbats and megabats and acknowledged that flight has only evolved once in mammals. Most molecular biological evidence supports the view that bats form a natural or monophyletic group.

Genetic evidence indicates that megabats originated during the early Eocene, and belong within the four major lines of microbats. Two new suborders have been proposed; Yinpterochiroptera includes the Pteropodidae, or megabat family, as well as the families Rhinolophidae, Hipposideridae, Craseonycteridae, Megadermatidae, and Rhinopomatidae. Yangochiroptera includes the other families of bats (all of which use laryngeal echolocation), a conclusion supported by a 2005 DNA study. A 2013 phylogenomic study supported the two new proposed suborders.

 
In the 1980s, a hypothesis based on morphological evidence stated the Megachiroptera evolved flight separately from the Microchiroptera. The flying primate hypothesis proposed that, when adaptations to flight are removed, the Megachiroptera are allied to primates by anatomical features not shared with Microchiroptera. For example, the brains of megabats have advanced characteristics. Although recent genetic studies strongly support the monophyly of bats, debate continues about the meaning of the genetic and morphological evidence.

The 2003 discovery of an early fossil bat from the 52 million year old Green River Formation, Onychonycteris finneyi, indicates that flight evolved before echolocative abilities. Onychonycteris had claws on all five of its fingers, whereas modern bats have at most two claws on two digits of each hand. It also had longer hind legs and shorter forearms, similar to climbing mammals that hang under branches, such as sloths and gibbons. This palm-sized bat had short, broad wings, suggesting that it could not fly as fast or as far as later bat species. Instead of flapping its wings continuously while flying, Onychonycteris probably alternated between flaps and glides in the air. This suggests that this bat did not fly as much as modern bats, but flew from tree to tree and spent most of its time climbing or hanging on branches. The distinctive features of the Onychonycteris fossil also support the hypothesis that mammalian flight most likely evolved in arboreal locomotors, rather than terrestrial runners. This model of flight development, commonly known as the "trees-down" theory, holds that bats first flew by taking advantage of height and gravity to drop down on to prey, rather than running fast enough for a ground-level take off.

The molecular phylogeny is controversial, as it points to microbats not having a unique common ancestry, which implies that some seemingly unlikely transformations occurred. The first is that laryngeal echolocation evolved twice in bats, once in Yangochiroptera and once in the rhinolophoids. The second is that laryngeal echolocation had a single origin in Chiroptera, was subsequently lost in the family Pteropodidae (all megabats), and later evolved as a system of tongue-clicking in the genus Rousettus. Analyses of the sequence of the vocalization gene FoxP2 were inconclusive on whether laryngeal echolocation was lost in the pteropodids or gained in the echolocating lineages. Echolocation probably first derived in bats from communicative calls. The Eocene bats Icaronycteris (52 million years ago) and Palaeochiropteryx had cranial adaptations suggesting an ability to detect ultrasound. This may have been used at first mainly to forage on the ground for insects and map out their surroundings in their gliding phase, or for communicative purposes. After the adaptation of flight was established, it may have been refined to target flying prey by echolocation. Bats may have evolved echolocation through a shared common ancestor, in which case it was then lost in the Old World megabats, only to be regained in the horseshoe bats; or, echolocation evolved independently in both the Yinpterochiroptera and Yangochiroptera lineages. Analyses of the hearing gene Prestin seem to favour the idea that echolocation developed independently at least twice, rather than being lost secondarily in the pteropodids.

Classification

Bats are placental mammals. After rodents, they are the largest order, making up about 20% of mammal species. In 1758, Carl Linnaeus classified the seven bat species he knew of in the genus Vespertilio in the order Primates. Around twenty years later, the German naturalist Johann Friedrich Blumenbach gave them their own order, Chiroptera. Since then, the number of described species has risen to over 1,200, traditionally classified as two suborders: Megachiroptera (megabats), and Microchiroptera (microbats/echolocating bats). Not all megabats are larger than microbats. Several characteristics distinguish the two groups. Microbats use echolocation for navigation and finding prey, but megabats apart from those in the genus Rousettus do not, relying instead on their eyesight. Accordingly, megabats have a well-developed visual cortex and good visual acuity. Megabats have a claw on the second finger of the forelimb. The external ears of microbats do not close to form a ring; the edges are separated from each other at the base of the ear. Megabats eat fruit, nectar, or pollen, while most microbats eat insects; others feed on fruit, nectar, pollen, fish, frogs, small mammals, or blood.

"Chiroptera" from Ernst Haeckel's Kunstformen der Natur, 1904
 
The following classification from Agnarsson and colleagues in 2011 reflects the traditional division into megabat and microbat suborders.

Anatomy and physiology

Skull and dentition

A preserved megabat showing how the skeleton fits inside its skin
 
The head and teeth shape of bats can vary by species. In general, megabats have longer snouts, larger eye sockets and smaller ears, giving them a more dog-like appearance, which is the source of their nickname of "flying foxes". Among microbats, longer snouts are associated with nectar-feeding. while vampire bats have reduced snouts to accommodate large incisors and canines.

Small insect-eating bats can have as many as 38 teeth, while vampire bats have only 20. Bats that feed on hard-shelled insects have fewer but larger teeth with longer canines and more robust lower jaws than species that prey on softer bodied insects. In nectar-feeding bats, the canines are long while the cheek-teeth are reduced. In fruit-eating bats, the cusps of the cheek teeth are adapted for crushing. These feeding behaviors are true for both megabats and microbats. The upper incisors of vampire bats lack enamel, which keeps them razor-sharp. The bite force of small bats is generated through mechanical advantage, allowing them to bite through the hardened armour of insects or the skin of fruit.

Wings and flight

Bats are the only mammals capable of sustained flight, as opposed to gliding, as in the flying squirrel. The fastest bat, the Mexican free-tailed bat (Tadarida brasiliensis), can achieve a ground speed of 160 kilometres per hour (99 mph).

The finger bones of bats are much more flexible than those of other mammals, owing to their flattened cross-section and to low levels of calcium near their tips. The elongation of bat digits, a key feature required for wing development, is due to the upregulation of bone morphogenetic proteins (Bmps). During embryonic development, the gene controlling Bmp signalling, Bmp2, is subjected to increased expression in bat forelimbs—resulting in the extension of the manual digits. This crucial genetic alteration helps create the specialised limbs required for powered flight. The relative proportion of extant bat forelimb digits compared with those of Eocene fossil bats have no significant differences, suggesting that bat wing morphology has been conserved for over 50 million years. During flight, the bones undergo bending and shearingstress; the bending stresses felt are smaller than in terrestrial mammals, but the shearing stress is larger. The wing bones of bats have a slightly lower breaking stress point than those of birds.
 
As in other mammals, and unlike in birds, the radius is the main component of the forearm. Bats have five elongated digits, which all radiate around the wrist. The thumb points forward and supports the leading edge of the wing, and the other digits support the tension held in the wing membrane. The second and third digits go along the wing tip, allowing the wing to be pulled forward against aerodynamic drag, without having to be thick as in pterosaur wings. The fourth and fifth digits go from the wrist to the trailing edge, and repel the bending force caused by air pushing up against the stiff membrane. Due to their flexible joints, bats are more manoeuvrable and more dexterous than gliding mammals.

Wing membranes (patagia) of Townsend's big-eared bat, Corynorhinus townsendii
 
The wings of bats are much thinner and consist of more bones than the wings of birds, allowing bats to manoeuvre more accurately than the latter, and fly with more lift and less drag. By folding the wings in toward their bodies on the upstroke, they save 35 percent energy during flight. The membranes are delicate, tearing easily, but can regrow, and small tears heal quickly. The surface of the wings is equipped with touch-sensitive receptors on small bumps called Merkel cells, also found on human fingertips. These sensitive areas are different in bats, as each bump has a tiny hair in the centre, making it even more sensitive and allowing the bat to detect and adapt to changing airflow; the primary use is to judge the most efficient speed to fly at, and possibly also to avoid stalls. Insectivorous bats may also use tactile hairs to help perform complex manoeuvres to capture prey in flight.

The patagium is the wing membrane; it is stretched between the arm and finger bones, and down the side of the body to the hind limbs and tail. This skin membrane consists of connective tissue, elastic fibres, nerves, muscles, and blood vessels. The muscles keep the membrane taut during flight. The extent to which the tail of a bat is attached to a patagium can vary by species, with some having completely free tails or even no tails. The skin on the body of the bat, which has one layer of epidermis and dermis, as well as hair follicles, sweat glands and a fatty subcutaneous layer, is very different from the skin of the wing membrane. The patagium is an extremely thin double layer of epidermis; these layers are separated by a connective tissue centre, rich with collagen and elastic fibres. The membrane has no hair follicles or sweat glands, except between the fingers. For bat embryos, apoptosis (cell death) only affects the hindlimbs, while the forelimbs retain webbing between the digits that forms into the wing membranes. Unlike birds, whose stiff wings deliver bending and torsional stress to the shoulders, bats have a flexible wing membrane that can only resist tension. To achieve flight, a bat exerts force inwards at the points where the membrane meets the skeleton, so that an opposing force balances it on the wing edges perpendicular to the wing surface. This adaptation does not permit bats to reduce their wingspans, unlike birds, which can partly fold their wings in flight, radically reducing the wing span and area for the upstroke and for gliding. Hence bats cannot travel over long distances as birds can.

Nectar- and pollen-eating bats can hover, in a similar way to hummingbirds. The sharp leading edges of the wings can create vortices, which provide lift. The vortex may be stabilised by the animal changing its wing curvatures.

Roosting and gaits

Group of megabats roosting
 
When not flying, bats hang upside down from their feet, a posture known as roosting. The femurs are attached at the hips in a way that allows them to bend outward and upward in flight. The ankle joint can flex to allow the trailing edge of the wings to bend downwards. This does not permit many movements other than hanging or clambering up trees. Most megabats roost with the head tucked towards the belly, whereas most microbats roost with the neck curled towards the back. This difference is reflected in the structure of the cervical or neck vertebrae in the two groups, which are clearly distinct. Tendons allow bats to lock their feet closed when hanging from a roost. Muscular power is needed to let go, but not to grasp a perch or when holding on.

When on the ground, most bats can only crawl awkwardly. A few species such as the New Zealand lesser short-tailed bat and the common vampire bat are agile on the ground. Both species make lateral gaits (the limbs move one after the other) when moving slowly but vampire bats move with a bounding gait (all limbs move in unison) at greater speeds, the folded up wings being used to propel them forward. Vampire bat likely evolved these gaits to follow their hosts while short-tailed bats developed in the absence of terrestrial mammal competitors. Enhanced terrestrial locomotion does not appear to have reduced their ability to fly.

Internal systems

Bats have an efficient circulatory system. They seem to make use of particularly strong venomotion, a rhythmic contraction of venous wall muscles. In most mammals, the walls of the veins provide mainly passive resistance, maintaining their shape as deoxygenated blood flows through them, but in bats they appear to actively support blood flow back to the heart with this pumping action. Since their bodies are relatively small and lightweight, bats are not at risk of blood flow rushing to their heads when roosting.

Bats possess a highly adapted respiratory system to cope with the demands of powered flight, an energetically taxing activity that requires a large continuous throughput of oxygen. In bats, the relative alveolar surface area and pulmonary capillary blood volume are larger than in most other small quadrupedal mammals. Because of the restraints of the mammalian lungs, bats cannot maintain high-altitude flight.

The wings are highly vascularized membranes, the larger blood vessels visible against the light.
 
It takes a lot of energy and an efficient circulatory system to work the flight muscles of bats. Energy supply to the muscles engaged in flight require about double the amount compared to the muscles that do not use flight as a means of mammalian locomotion. In parallel to energy consumption, blood oxygen levels of flying animals are twice as much as those of their terrestrially locomoting mammals. As the blood supply controls the amount of oxygen supplied throughout the body, the circulatory system must respond accordingly. Therefore, compared to a terrestrial mammal of the same relative size, the bat's heart can be up to three times larger, and pump more blood. Cardiac output is directly derived from heart rate and stroke volume of the blood; an active microbat can reach a heart rate of 1000 beats per minute.

With its extremely thin membranous tissue, a bat's wing can significantly contribute to the organism's total gas exchange efficiency. Because of the high energy demand of flight, the bat's body meets those demands by exchanging gas through the patagium of the wing. When the bat has its wings spread it allows for an increase in surface area to volume ratio. The surface area of the wings is about 85% of the total body surface area, suggesting the possibility of a useful degree of gas exchange. The subcutaneous vessels in the membrane lie very close to the surface and allow for the diffusion of oxygen and carbon dioxide.

The digestive system of bats has varying adaptations depending on the species of bat and its diet. As in other flying animals, food is processed quickly and effectively to keep up with the energy demand. Insectivorous bats may have certain digestive enzymes to better process insects, such as chitinase to break down chitin, which is a large component of insects. Vampire bats, probably due to their diet of blood, are the only vertebrates that do not have the enzyme maltase, which breaks down malt sugar, in their intestinal tract. Nectivorous and frugivorous bats have more maltase and sucrase enzymes than insectivorous, to cope with the higher sugar contents of their diet.

The adaptations of the kidneys of bats vary with their diets. Carnivorous and vampire bats consume large amounts of protein and can output concentrated urine; their kidneys have a thin cortex and long renal papillae. Frugivorous bats lack that ability and have kidneys adapted for electrolyte-retention due to their low-electrolyte diet; their kidneys accordingly have a thick cortex and very short conical papillae.

Bats have higher metabolic rates associated with flying, which lead to an increased respiratory water loss. Their large wings are composed of the highly vascularized membranes, increasing the surface area, and leading to cutaneous evaporative water loss. Water helps maintain their ionic balance in their blood, thermoregulation system, and removal of wastes and toxins from the body via urine. They are also susceptible to blood urea poisoning if they do not receive enough fluid.

The structure of the uterine system in female bats can vary by species, with some having two uterine horns while others have a single mainline chamber.

Senses

Echolocation

Microbats and a few megabats emit ultrasonic sounds to produce echoes. By comparing the outgoing pulse with the returning echoes, the brain and auditory nervous system can produce detailed images of the bat's surroundings. This allows bats to detect, localise, and classify their prey in darkness. Bat calls are some of the loudest airborne animal sounds, and can range in intensity from 60 to 140 decibels. Microbats use their larynx to create ultrasound, and emit it through the mouth and sometimes the nose. The latter is most pronounced in the horseshoe bats (Rhinolophus spp.). Microbat calls range in frequency from 14,000 to well over 100,000 Hz, extending well beyond the range of human hearing (between 20 and 20,000 Hz). Various groups of bats have evolved fleshy extensions around and above the nostrils, known as nose-leaves, which play a role in sound transmission.

Principle of bat echolocation: orange is the call and green is the echo
 
In low-duty cycle echolocation, bats can separate their calls and returning echoes by time. They have to time their short calls to finish before echoes return. Bats contract their middle ear muscles when emitting a call, so they can avoid deafening themselves. The time interval between the call and echo allows them to relax these muscles, so they can hear the returning echo. The delay of the returning echoes allows the bat to estimate the range to their prey.

In high-duty cycle echolocation, bats emit a continuous call and separate pulse and echo in frequency. The ears of these bats are sharply tuned to a specific frequency range. They emit calls outside this range to avoid deafening themselves. They then receive echoes back at the finely tuned frequency range by taking advantage of the Doppler shift of their motion in flight. The Doppler shift of the returning echoes yields information relating to the motion and location of the bat's prey. These bats must deal with changes in the Doppler shift due to changes in their flight speed. They have adapted to change their pulse emission frequency in relation to their flight speed so echoes still return in the optimal hearing range.

In addition to echolocating prey, bat ears are sensitive to the fluttering of moth wings, the sounds produced by tymbalate insects, and the movement of ground-dwelling prey, such as centipedes and earwigs. The complex geometry of ridges on the inner surface of bat ears helps to sharply focus echolocation signals, and to passively listen for any other sound produced by the prey. These ridges can be regarded as the acoustic equivalent of a Fresnel lens, and exist in a large variety of unrelated animals, such as the aye-aye, lesser galago, bat-eared fox, mouse lemur, and others. Bats can estimate the elevation of their target using the interference patterns from the echoes reflecting from the tragus, a flap of skin in the external ear.

The tiger moth (Bertholdia trigona) can jam bat echolocation
 
By repeated scanning, bats can mentally construct an accurate image of the environment in which they are moving and of their prey. Some species of moth have exploited this, such as the tiger moths, which produces aposematic ultrasound signals to warn bats that they are chemically protected and therefore distasteful. Moth species including the tiger moth can produce signals to jam bat echolocation. Many moth species have a hearing organ called a tympanum, which responds to an incoming bat signal by causing the moth's flight muscles to twitch erratically, sending the moth into random evasive manoeuvres.

Vision

The eyes of most microbat species are small and poorly developed, leading to poor visual acuity, but no species is blind. Most microbats have mesopic vision, meaning that they can only detect light in low levels, whereas other mammals have photopic vision, which allows colour vision. Microbats may use their vision for orientation and while travelling between their roosting grounds and feeding grounds, as echolocation is only effective over short distances. Some species can detect ultraviolet (UV). As the bodies of some microbats have distinct coloration, they may be able to discriminate colours.

Megabat species often have eyesight as good as, if not better than, human vision. Their eyesight is adapted to both night and daylight vision, including some colour vision.

Magnetoreception

Microbats make use of magnetoreception, in that they have a high sensitivity to the Earth's magnetic field, as birds do. Microbats use a polarity-based compass, meaning that they differentiate north from south, unlike birds, which use the strength of the magnetic field to differentiate latitudes, which may be used in long-distance travel. The mechanism is unknown but may involve magnetite particles.

Thermoregulation

Thermographic image of a bat using trapped air as insulation
 
Most bats are homeothermic (having a stable body temperature), the exception being the vesper bats (Vespertilionidae), the horseshoe bats (Rhinolophidae), the free-tailed bats (Molossidae), and the bent-winged bats (Miniopteridae), which extensively use heterothermy (where body temperature can vary). Compared to other mammals, bats have a high thermal conductivity. The wings are filled with blood vessels, and lose body heat when extended. At rest, they may wrap their wings around themselves to trap a layer of warm air. Smaller bats generally have a higher metabolic rate than larger bats, and so need to consume more food in order to maintain homeothermy.

Bats may avoid flying during the day to prevent overheating in the sun, since their dark wing-membranes absorb solar radiation. Bats may not be able to dissipate heat if the ambient temperature is too high; they use saliva to cool themselves in extreme conditions. Among megabats, the flying fox Pteropus hypomelanus uses saliva and wing-fanning to cool itself while roosting during the hottest part of the day. Among microbats, the Yuma myotis (Myotis yumanensis), the Mexican free-tailed bat and the pallid bat (Antrozous pallidus) cope with temperatures up to 45 Celsius by panting, salivating and licking their fur to promote evaporative cooling; this is sufficient to dissipate twice their metabolic heat production.

Bats also possess a system of sphincter valves on the arterial side of the vascular network that runs along the edge of their wings. When fully open, these allow oxygenated blood to flow through the capillary network across the wing membrane; when contracted, they shunt flow directly to the veins, bypassing the wing capillaries. This allows bats to control how much heat is exchanged through the flight membrane, allowing them to release heat during flight. Many other mammals use the capillary network in oversized ears for the same purpose.

Torpor

A tricoloured bat (Perimyotis subflavus) in torpor
 
Torpor, a state of decreased activity where the body temperature and metabolism decreases, is especially useful for microbats, as they use a large amount of energy while active, depend upon an unreliable food source, and have a limited ability to store fat. They generally drop their body temperature in this state to 6–30 °C (43–86 °F), and may reduce their energy expenditure by 50 to 99%. Around 97% of all microbats use torpor. Tropical bats may use it to avoid predation, by reducing the amount of time spent on foraging and thus reducing the chance of being caught by a predator. Megabats were generally believed to be homeothermic, but three species of small megabats, with a mass of about 50 grams (1.8 oz), have been known to use torpor: the common blossom bat (Syconycteris australis), the long-tongued nectar bat (Macroglossus minimus), and the eastern tube-nosed bat (Nyctimene robinsoni). Torpid states last longer in the summer for megabats than in the winter.

During hibernation, bats enter a torpid state and decrease their body temperature for 99.6% of their hibernation period; even during periods of arousal, when they return their body temperature to normal, they sometimes enter a shallow torpid state, known as "heterothermic arousal". Some bats become dormant during higher temperatures to keep cool in the summer months.

Heterothermic bats during long migrations may fly at night and go into a torpid state roosting in the daytime. Unlike migratory birds, which fly during the day and feed during the night, nocturnal bats have a conflict between travelling and eating. The energy saved reduces their need to feed, and also decreases the duration of migration, which may prevent them from spending too much time in unfamiliar places, and decrease predation. In some species, pregnant individuals may not use torpor.

Size

The smallest bat is Kitti's hog-nosed bat (Craseonycteris thonglongyai), which is 29–34 millimetres (1.1–1.3 in) long with a 15 centimetres (5.9 in) wingspan and weighs 2–2.6 grams (0.071–0.092 oz). It is also arguably the smallest extant species of mammal, next to the Etruscan shrew. The largest bats are a few species of Pteropus megabats and the giant golden-crowned flying fox, (Acerodon jubatus), which can weigh 1.6 kilograms (3.5 lb) with a wingspan of 1.7 metres (5.6 ft). Larger bats tend to use lower frequencies and smaller bats higher for echolocation; high-frequency echolocation is better at detecting smaller prey. Small prey may be absent in the diets of large bats as they are unable to detect them. The adaptations of a particular bat species can directly influence what kinds of prey are available to it.

Ecology

Tent-making bats (Uroderma bilobatum) in Costa Rica
 
Flight has enabled bats to become one of the most widely distributed groups of mammals. Apart from the high Arctic, the Antarctic and a few isolated oceanic islands, bats exist in almost every habitat on Earth. Tropical areas tend to have more species than temperate ones. Different species select different habitats during different seasons, ranging from seasides to mountains and deserts, but they require suitable roosts. Bat roosts can be found in hollows, crevices, foliage, and even human-made structures, and include "tents" the bats construct with leaves. Megabats generally roost in trees. Most microbats are nocturnal and megabats are typically diurnal or crepuscular.

In temperate areas, some microbats migrate hundreds of kilometres to winter hibernation dens; others pass into torpor in cold weather, rousing and feeding when warm weather allows insects to be active. Others retreat to caves for winter and hibernate for as much as six months. Microbats rarely fly in rain; it interferes with their echolocation, and they are unable to hunt.

Food and feeding

Mexican long-tongued bat (Choeronycteris mexicana) drinking from a cactus
 
Different bat species have different diets, including insects, nectar, pollen, fruit and even vertebrates. Megabats are mostly fruit, nectar and pollen eaters. Due to their small size, high-metabolism and rapid burning of energy through flight, bats must consume large amounts of food for their size. Insectivorous bats may eat over 120 percent of their body weight, while frugivorous bats may eat over twice their weight. They can travel significant distances each night, exceptionally as much as 38.5 kilometres (23.9 mi) in the spotted bat (Euderma maculatum), in search of food. Bats use a variety of hunting strategies. Bats get most of their water from the food they eat; many species also drink from water sources like lakes and streams, flying over the surface and dipping their tongues into the water.

The Chiroptera as a whole are in the process of losing the ability to synthesise vitamin C. In a test of 34 bat species from six major families, including major insect- and fruit-eating bat families, all were found to have lost the ability to synthesise it, and this loss may derive from a common bat ancestor, as a single mutation. At least two species of bat, the frugivorous bat (Rousettus leschenaultii) and the insectivorous bat (Hipposideros armiger), have retained their ability to produce vitamin C.

Insects

Most microbats, especially in temperate areas, prey on insects. The diet of an insectivorous bat may span many species, including flies, mosquitos, beetles, moths, grasshoppers, crickets, termites, bees, wasps, mayflies and caddisflies. Large numbers of Mexican free-tailed bats (Tadarida brasiliensis) fly hundreds of metres above the ground in central Texas to feed on migrating moths. Species that hunt insects in flight, like the little brown bat (Myotis lucifugus), may catch an insect in mid-air with the mouth, and eat it in the air or use their tail membranes or wings to scoop up the insect and carry it to the mouth. The bat may also take the insect back to its roost and eat it there. Slower moving bat species such as the brown long-eared bat (Plecotus auritus) and many horseshoe bat species, may take or glean insects from vegetation or hunt them from perches. Insectivorous bats living at high latitudes have to consume prey with higher energetic value than tropical bats.

Fruit and nectar

An Egyptian fruit bat (Rousettus aegyptiacus) carrying a fig
 
Fruit eating, or frugivory, is found in both major suborders. Bats prefer ripe fruit, pulling it off the trees with their teeth. They fly back to their roosts to eat the fruit, sucking out the juice and spitting the seeds and pulp out onto the ground. This helps disperse the seeds of these fruit trees, which may take root and grow where the bats have left them, and many species of plants depend on bats for seed dispersal. The Jamaican fruit bat (Artibeus jamaicensis) has been recorded carrying fruits weighing 3–14 g (0.11–0.49 oz) or even as much as 50 g (1.8 oz).

Nectar-eating bats have acquired specialised adaptations. These bats possess long muzzles and long, extensible tongues covered in fine bristles that aid them in feeding on particular flowers and plants. The tube-lipped nectar bat (Anoura fistulata) has the longest tongue of any mammal relative to its body size. This is beneficial to them in terms of pollination and feeding. Their long, narrow tongues can reach deep into the long cup shape of some flowers. When the tongue retracts, it coils up inside the rib cage. Because of these features, nectar-feeding bats cannot easily turn to other food sources in times of scarcity, making them more prone to extinction than other types of bat. Nectar feeding also aids a variety of plants, since these bats serve as pollinators, as pollen gets attached to their fur while they are feeding. Around 500 species of flowering plant rely on bat pollination and thus tend to open their flowers at night. Many rainforest plants depend on bat pollination.

Vertebrates

The greater noctule bat (Nyctalus lasiopterus) uses its large teeth to catch birds.
 
Some bats prey on other vertebrates, such as fish, frogs, lizards, birds and mammals. The fringe-lipped bat (Trachops cirrhosus,) for example, is skilled at catching frogs. These bats locate large groups of frogs by tracking their mating calls, then plucking them from the surface of the water with their sharp canine teeth. The greater noctule bat can catch birds in flight. Some species, like the greater bulldog bat (Noctilio leporinus) hunt fish. They use echolocation to detect small ripples on the water's surface, swoop down and use specially enlarged claws on their hind feet to grab the fish, then take their prey to a feeding roost and consume it. At least two species of bat are known to feed on other bats: the spectral bat (Vampyrum spectrum), and the ghost bat (Macroderma gigas).

Blood

The common vampire bat (Desmodus rotundus) feeds on blood (hematophagy).
 
A few species, specifically the common, white-winged, and hairy-legged vampire bats, only feed on animal blood (hematophagy). The common vampire bat typically feeds on large mammals such as cattle; the hairy-legged and white-winged vampires feed on birds. Vampire bats target sleeping prey and can detect deep breathing. Heat sensors in the nose help them to detect blood vessels near the surface of the skin. They pierce the animal's skin with their teeth, biting away a small flap, and lap up the blood with their tongues, which have lateral grooves adapted to this purpose. The blood is kept from clotting by an anticoagulant in the saliva.

Predators, parasites, and diseases

Bats are subject to predation from birds of prey, such as owls, hawks, and falcons, and at roosts from terrestrial predators able to climb, such as cats. Twenty species of tropical New World snakes are known to capture bats, often waiting at the entrances of refuges, such as caves, for bats to fly past. J. Rydell and J. R. Speakman argue that bats evolved nocturnality during the early and middle Eocene period to avoid predators. The evidence is thought by some zoologists to be equivocal so far.

Among ectoparasites, bats carry fleas and mites, as well as specific parasites such as bat bugs and bat flies (Nycteribiidae and Streblidae). Bats are among the few non-aquatic mammalian orders that do not host lice, possibly due to competition from more specialised parasites that occupy the same niche.

White nose syndrome is a condition associated with the deaths of millions of bats in the Eastern United States and Canada. The disease is named after a white fungus, Pseudogymnoascus destructans, found growing on the muzzles, ears, and wings of afflicted bats. The fungus is mostly spread from bat to bat, and causes the disease. The fungus was first discovered in central New York State in 2006 and spread quickly to the entire Eastern US north of Florida; mortality rates of 90–100% have been observed in most affected caves. New England and the mid-Atlantic states have, since 2006, witnessed entire species completely extirpated and others with numbers that have gone from the hundreds of thousands, even millions, to a few hundred or less. Nova Scotia, Quebec, Ontario, and New Brunswick have witnessed identical die offs, with the Canadian government making preparations to protect all remaining bat populations in its territory. Scientific evidence suggests that longer winters where the fungus has a longer period to infect bats result in greater mortality. In 2014, the infection crossed the Mississippi River, and in 2017, it was found on bats in Texas.

Bats are natural reservoirs for a large number of zoonotic pathogens, including rabies, endemic in many bat populations, histoplasmosis both directly and in guano, Nipah and Hendra viruses, and possibly the ebola virus. Their high mobility, broad distribution, long life spans, substantial sympatry (range overlap) of species, and social behaviour make bats favourable hosts and vectors of disease. Compared to rodents, bats carry more zoonotic viruses per species, and each virus is shared with more species. They seem to be highly resistant to many of the pathogens they carry, suggesting a degree of adaptation to their immune systems. Their interactions with livestock and pets, including predation by vampire bats, accidental encounters, and the scavenging of bat carcasses, compound the risk of zoonotic transmission. Bats are implicated in the emergence of severe acute respiratory syndrome (SARS) in China, since they serve as natural hosts for Coronaviruses, several from a single cave in Yunnan, one of which developed into the SARS virus.

Social behaviour

Social structure

File:Bracken Bat Cave evening of 17 June 2017.ogv
Bracken Bat Cave, home to 20 million Mexican free-tailed bats
 
Some bats lead solitary lives, while others live in colonies of more than a million. Living in large colonies lessens the risk to an individual of predation. Temperate bat species may swarm at hibernation sites as autumn approaches. This may serve to introduce young to hibernation sites, signal reproduction in adults and allow adults to breed with those from other groups.

Several species have a fission-fusion social structure, where large numbers of bats congregate in one roosting area, along with breaking up and mixing of subgroups. Within these societies, bats are able to maintain long term relationships. Some of these relationships consist of matrilineally related females and their dependent offspring. Food sharing and mutual grooming may occur in certain species, such as the common vampire bat (Desmodus rotundus), and these strengthen social bonds.

Communication

Acoustics of the songs of Mexican free-tailed bats
 
Bats are among the most vocal of mammals and produce calls to attract mates, find roost partners and defend resources. These calls are typically low-frequency and can travel long distances. Mexican free-tailed bats are one of the few species to "sing" like birds. Males sing to attract females. Songs have three phrases: chirps, trills and buzzes, the former having "A" and "B" syllables. Bat songs are highly stereotypical but with variation in syllable number, phrase order, and phrase repetitions between individuals. Among greater spear-nosed bats (Phyllostomus hastatus), females produce loud, broadband calls among their roost mates to form group cohesion. Calls differ between roosting groups and may arise from vocal learning.

In a study on captive Egyptian fruit bats, 70% of the directed calls could be identified by the researchers as to which individual bat made it, and 60% could be categorised into four contexts: squabbling over food, jostling over position in their sleeping cluster, protesting over mating attempts and arguing when perched in close proximity to each other. The animals made slightly different sounds when communicating with different individual bats, especially those of the opposite sex. In the highly sexually dimorphic hammer-headed bat (Hypsignathus monstrosus), males produce deep, resonating, monotonous calls to attract females. Bats in flight make vocal signals for traffic control. Greater bulldog bats honk when on a collision course with each other.

Bats also communicate by other means. Male little yellow-shouldered bats (Sturnira lilium) have shoulder glands that produce a spicy odour during the breeding season. Like many other species, they have hair specialised for retaining and dispersing secretions. Such hair forms a conspicuous collar around the necks of the some Old World megabat males. Male greater sac-winged bats (Saccopteryx bilineata) have sacs in their wings in which they mix body secretions like saliva and urine to create a perfume that they sprinkle on roost sites, a behaviour known as "salting". Salting may be accompanied by singing.

Reproduction and life history

Group of polygynous vampire bats

Strategies

Most bat species are polygynous, where males mate with multiple females. Male pipistrelle, noctule and vampire bats may claim and defend resources that attract females, such as roost sites, and mate with those females. Males unable to claim a site are forced to live on the periphery where they have less reproductive success. Promiscuity, where both sexes mate with multiple partners, exists in species like the Mexican free-tailed bat and the little brown bat. There appears to be bias towards certain males among females in these bats. In a few species, such as the yellow-winged bat and spectral bat, adult males and females form monogamous pairs. Lek mating, where males aggregate and compete for female choice through display, is rare in bats but occurs in the hammerheaded bat.

Mating

For temperate living bats, mating takes place in late summer and early autumn. Tropical bats may mate during the dry season. After copulation, the male may leave behind a mating plug to block the sperm of other males and thus ensure his paternity. In hibernating species, males are known to mate with females in torpor. Female bats use a variety of strategies to control the timing of pregnancy and the birth of young, to make delivery coincide with maximum food ability and other ecological factors. Females of some species have delayed fertilisation, in which sperm is stored in the reproductive tract for several months after mating. Mating occurs in the autumn but fertilisation does not occur until the following spring. Other species exhibit delayed implantation, in which the egg is fertilised after mating, but remains free in the reproductive tract until external conditions become favourable for giving birth and caring for the offspring. In another strategy, fertilisation and implantation both occur, but development of the foetus is delayed until good conditions prevail. During the delayed development the mother keeps the fertilised egg alive with nutrients. This process can go on for a long period, because of the advanced gas exchange system.

Life cycle

Newborn common pipistrelle, Pipistrellus pipistrellus
 
For temperate living bats, births typically take place in May or June in the northern hemisphere; births in the southern hemisphere occur in November and December. Tropical species give birth at the beginning of the rainy season. In most bat species, females carry and give birth to a single pup per litter. At birth, a bat pup can be up to 40 percent of the mother's weight, and the pelvic girdle of the female can expand during birth as the two halves are connected by a flexible ligament. Females typically give birth in a head-up or horizontal position, using gravity to make birthing easier. The young emerges rear-first, possibly to prevent the wings from getting tangled, and the female cradles it in her wing and tail membranes. In many species, females give birth and raise their young in maternity colonies and may assist each other in birthing.

Most of the care for a young bat comes from the mother. In monogamous species, the father plays a role. Allo-suckling, where a female suckles another mother's young, occurs in several species. This may serve to increase colony size in species where females return to their natal colony to breed. A young bat's ability to fly coincides with the development of an adult body and forelimb length. For the little brown bat, this occurs about eighteen days after birth. Weaning of young for most species takes place in under eighty days. The common vampire bat nurses its offspring beyond that and young vampire bats achieve independence later in life than other species. This is probably due to the species' blood-based diet, which is difficult to obtain on a nightly basis.

Life expectancy

The maximum lifespan of bats is three-and-a-half times longer than other mammals of similar size. Six species have been recorded to live over 30 years in the wild: the brown long-eared bat (Plecotus auritus), the little brown bat (Myotis lucifugus), Brandt's bat (Myotis brandti), the lesser mouse-eared bat (Myotis blythii) the greater horseshoe bat (Rhinolophus ferrumequinum), and the Indian flying fox (Pteropus giganteus). One hypothesis consistent with the rate-of-living theory links this to the fact that they slow down their metabolic rate while hibernating; bats that hibernate, on average, have a longer lifespan than bats that do not. Another hypothesis is that flying has reduced their mortality rate, which would also be true for birds and gliding mammals. Bat species that give birth to multiple pups generally have a shorter lifespan than species that give birth to only a single pup. Cave-roosting species may have a longer lifespan than non-roosting species because of the decreased predation in caves. A male Brandt's bat was recaptured in the wild after 41 years, making it the oldest known bat.

Interactions with humans

Conservation

Bat roost in San Antonio, Texas, 1915
 
Groups such as the Bat Conservation International aim to increase awareness of bats' ecological roles and the environmental threats they face. In the United Kingdom, all bats are protected under the Wildlife and Countryside Acts, and disturbing a bat or its roost can be punished with a heavy fine. In Sarawak, Malaysia, "all bats" are protected under the Wildlife Protection Ordinance 1998, but species such as the hairless bat (Cheiromeles torquatus) are still eaten by the local communities. Humans have caused the extinction of several species of bat in modern history, the most recent being the Christmas Island pipistrelle (Pipistrellus murrayi), which was declared extinct in 2009.

Many people put up bat houses to attract bats. The 1991 University of Florida bat house is the largest occupied artificial roost in the world, with around 400,000 residents. In Britain, thickwalled and partly underground World War II pillboxes have been converted to make roosts for bats, and purpose-built bat houses are occasionally built to mitigate damage to habitat from road or other developments. Cave gates are sometimes installed to limit human entry into caves with sensitive or endangered bat species. The gates are designed not to limit the airflow, and thus to maintain the cave's micro-ecosystem. Of the 47 species of bats found in the United States, 35 are known to use human structures, including buildings and bridges. Fourteen species use bat houses.

Bats are eaten in countries across Asia and the Pacific Rim. In some cases, such as in Guam, flying foxes have become endangered through being hunted for food. There is evidence that wind turbines create sufficient barotrauma (pressure damage) to kill bats. Bats have typical mammalian lungs, which are thought to be more sensitive to sudden air pressure changes than the lungs of birds, making them more liable to fatal rupture. Bats may be attracted to turbines, perhaps seeking roosts, increasing the death rate. Acoustic deterrents may help to reduce bat mortality at wind farms.

Cultural significance

Francisco Goya, The Sleep of Reason Produces Monsters, 1797
 
Since bats are mammals, yet can fly, they are considered to be liminal beings in various traditions. In many cultures, including in Europe, bats are associated with darkness, death, witchcraft, and malevolence. Among Native Americans such as the Creek, Cherokee and Apache, the bat is a trickster spirit. In Tanzania, a winged batlike creature known as Popobawa is believed to be a shapeshifting evil spirit that assaults and sodomises its victims. In Aztec mythology, bats symbolised the land of the dead, destruction, and decay. An East Nigerian tale tells that the bat developed its nocturnal habits after causing the death of his partner, the bush-rat, and now hides by day to avoid arrest.

More positive depictions of bats exist in some cultures. In China, bats have been associated with happiness, joy and good fortune. Five bats are used to symbolise the "Five Blessings": longevity, wealth, health, love of virtue and peaceful death. The bat is sacred in Tonga and is often considered the physical manifestation of a separable soul. In the Zapotec civilisation of Mesoamerica, the bat god presided over corn and fertility.

Zapotec bat god, Oaxaca, 350–500 AD
 
The Weird Sisters in Shakespeare's Macbeth used the fur of a bat in their brew. In Western culture, the bat is often a symbol of the night and its foreboding nature. The bat is a primary animal associated with fictional characters of the night, both villainous vampires, such as Count Dracula and before him Varney the Vampire, and heroes, such as Batman. Kenneth Oppel's Silverwing novels narrate the adventures of a young bat, based on the silver-haired bat of North America.

The bat is sometimes used as a heraldic symbol in Spain and France, appearing in the coats of arms of the towns of Valencia, Palma de Mallorca, Fraga, Albacete, and Montchauvet. Three US states have an official state bat. Texas and Oklahoma are represented by the Mexican free-tailed bat, while Virginia is represented by the Virginia big-eared bat (Corynorhinus townsendii virginianus).

Economics

Insectivorous bats in particular are especially helpful to farmers, as they control populations of agricultural pests and reduce the need to use pesticides. It has been estimated that bats save the agricultural industry of the United States anywhere from $3.7 billion to $53 billion per year in pesticides and damage to crops. This also prevents the overuse of pesticides, which can pollute the surrounding environment, and may lead to resistance in future generations of insects.

Bat dung, a type of guano, is rich in nitrates and is mined from caves for use as fertiliser. During the US Civil War, saltpetre was collected from caves to make gunpowder; it used to be thought that this was bat guano, but most of the nitrate comes from nitrifying bacteria.

The Congress Avenue Bridge in Austin, Texas, is the summer home to North America's largest urban bat colony, an estimated 1,500,000 Mexican free-tailed bats. About 100,000 tourists a year visit the bridge at twilight to watch the bats leave the roost.

Introduction to evolution

From Wikipedia, the free encyclopedia

The "Paleontological Tree of the Vertebrates," from the 5th edition of The Evolution of Man (London, 1910) by Ernst Haeckel. The evolutionary history of species has been described as a tree, with many branches arising from a single trunk.
 
Evolution is the process of change in all forms of life over generations, and evolutionary biology is the study of how evolution occurs. Biological populations evolve through genetic changes that correspond to changes in the organisms' observable traits. Genetic changes include mutations, which are caused by damage or replication errors in organisms' DNA. As the genetic variation of a population drifts randomly over generations, natural selection gradually leads traits to become more or less common based on the relative reproductive success of organisms with those traits. 

The age of the Earth is about 4.54 billion years. The earliest undisputed evidence of life on Earth dates at least from 3.5 billion years ago. Evolution does not attempt to explain the origin of life (covered instead by abiogenesis), but it does explain how early lifeforms evolved into the complex ecosystem that we see today. Based on the similarities between all present-day organisms, all life on Earth is assumed to have originated through common descent from a last universal ancestor from which all known species have diverged through the process of evolution.

All individuals have hereditary material in the form of genes received from their parents, which they pass on to any offspring. Among offspring there are variations of genes due to the introduction of new genes via random changes called mutations or via reshuffling of existing genes during sexual reproduction. The offspring differs from the parent in minor random ways. If those differences are helpful, the offspring is more likely to survive and reproduce. This means that more offspring in the next generation will have that helpful difference and individuals will not have equal chances of reproductive success. In this way, traits that result in organisms being better adapted to their living conditions become more common in descendant populations. These differences accumulate resulting in changes within the population. This process is responsible for the many diverse life forms in the world. 

The modern understanding of evolution began with the 1859 publication of Charles Darwin's On the Origin of Species. In addition, Gregor Mendel's work with plants helped to explain the hereditary patterns of genetics. Fossil discoveries in paleontology, advances in population genetics and a global network of scientific research have provided further details into the mechanisms of evolution. Scientists now have a good understanding of the origin of new species (speciation) and have observed the speciation process in the laboratory and in the wild. Evolution is the principal scientific theory that biologists use to understand life and is used in many disciplines, including medicine, psychology, conservation biology, anthropology, forensics, agriculture and other social-cultural applications.

Simple overview

The main ideas of evolution may be summarized as follows:
  • Life forms reproduce and therefore have a tendency to become more numerous.
  • Factors such as predation and competition work against the survival of individuals.
  • Each offspring differs from their parent(s) in minor, random ways.
  • If these differences are beneficial, the offspring is more likely to survive and reproduce.
  • This makes it likely that more offspring in the next generation will have beneficial differences and fewer will have detrimental differences.
  • These differences accumulate over generations, resulting in changes within the population.
  • Over time, populations can split or branch off into new species.
  • These processes, collectively known as evolution, are responsible for the many diverse life forms seen in the world.

Natural selection

Charles Darwin proposed the theory of evolution by natural selection.

In the 19th century, natural history collections and museums were popular. The European expansion and naval expeditions employed naturalists, while curators of grand museums showcased preserved and live specimens of the varieties of life. Charles Darwin was an English graduate educated and trained in the disciplines of natural history. Such natural historians would collect, catalogue, describe and study the vast collections of specimens stored and managed by curators at these museums. Darwin served as a ship's naturalist on board HMS Beagle, assigned to a five-year research expedition around the world. During his voyage, he observed and collected an abundance of organisms, being very interested in the diverse forms of life along the coasts of South America and the neighboring Galápagos Islands.

Darwin noted that orchids have complex adaptations to ensure pollination, all derived from basic floral parts.
 
Darwin gained extensive experience as he collected and studied the natural history of life forms from distant places. Through his studies, he formulated the idea that each species had developed from ancestors with similar features. In 1838, he described how a process he called natural selection would make this happen.

The size of a population depends on how much and how many resources are able to support it. For the population to remain the same size year after year, there must be an equilibrium, or balance between the population size and available resources. Since organisms produce more offspring than their environment can support, not all individuals can survive out of each generation. There must be a competitive struggle for resources that aid in survival. As a result, Darwin realised that it was not chance alone that determined survival. Instead, survival of an organism depends on the differences of each individual organism, or "traits," that aid or hinder survival and reproduction. Well-adapted individuals are likely to leave more offspring than their less well-adapted competitors. Traits that hinder survival and reproduction would disappear over generations. Traits that help an organism survive and reproduce would accumulate over generations. Darwin realised that the unequal ability of individuals to survive and reproduce could cause gradual changes in the population and used the term natural selection to describe this process.

Observations of variations in animals and plants formed the basis of the theory of natural selection. For example, Darwin observed that orchids and insects have a close relationship that allows the pollination of the plants. He noted that orchids have a variety of structures that attract insects, so that pollen from the flowers gets stuck to the insects' bodies. In this way, insects transport the pollen from a male to a female orchid. In spite of the elaborate appearance of orchids, these specialised parts are made from the same basic structures that make up other flowers. In his book, Fertilisation of Orchids (1862), Darwin proposed that the orchid flowers were adapted from pre-existing parts, through natural selection.

Darwin was still researching and experimenting with his ideas on natural selection when he received a letter from Alfred Russel Wallace describing a theory very similar to his own. This led to an immediate joint publication of both theories. Both Wallace and Darwin saw the history of life like a family tree, with each fork in the tree’s limbs being a common ancestor. The tips of the limbs represented modern species and the branches represented the common ancestors that are shared amongst many different species. To explain these relationships, Darwin said that all living things were related, and this meant that all life must be descended from a few forms, or even from a single common ancestor. He called this process descent with modification.

Darwin published his theory of evolution by natural selection in On the Origin of Species in 1859. His theory means that all life, including humanity, is a product of continuing natural processes. The implication that all life on Earth has a common ancestor has met with objections from some religious groups. Their objections are in contrast to the level of support for the theory by more than 99 percent of those within the scientific community today.

Natural selection is commonly equated with survival of the fittest, but this expression originated in Herbert Spencer's Principles of Biology in 1864, five years after Charles Darwin published his original works. Survival of the fittest describes the process of natural selection incorrectly, because natural selection is not only about survival and it is not always the fittest that survives.

Source of variation

Darwin's theory of natural selection laid the groundwork for modern evolutionary theory, and his experiments and observations showed that the organisms in populations varied from each other, that some of these variations were inherited, and that these differences could be acted on by natural selection. However, he could not explain the source of these variations. Like many of his predecessors, Darwin mistakenly thought that heritable traits were a product of use and disuse, and that features acquired during an organism's lifetime could be passed on to its offspring. He looked for examples, such as large ground feeding birds getting stronger legs through exercise, and weaker wings from not flying until, like the ostrich, they could not fly at all. This misunderstanding was called the inheritance of acquired characters and was part of the theory of transmutation of species put forward in 1809 by Jean-Baptiste Lamarck. In the late 19th century this theory became known as Lamarckism. Darwin produced an unsuccessful theory he called pangenesis to try to explain how acquired characteristics could be inherited. In the 1880s August Weismann's experiments indicated that changes from use and disuse could not be inherited, and Lamarckism gradually fell from favor.

The missing information needed to help explain how new features could pass from a parent to its offspring was provided by the pioneering genetics work of Gregor Mendel. Mendel's experiments with several generations of pea plants demonstrated that inheritance works by separating and reshuffling hereditary information during the formation of sex cells and recombining that information during fertilisation. This is like mixing different hands of playing cards, with an organism getting a random mix of half of the cards from one parent, and half of the cards from the other. Mendel called the information factors; however, they later became known as genes. Genes are the basic units of heredity in living organisms. They contain the information that directs the physical development and behavior of organisms. 

Genes are made of DNA. DNA is a long molecule made up of individual molecules called nucleotides. Genetic information is encoded in the sequence of nucleotides, that make up the DNA, just as the sequence of the letters in words carries information on a page. The genes are like short instructions built up of the "letters" of the DNA alphabet. Put together, the entire set of these genes gives enough information to serve as an "instruction manual" of how to build and run an organism. The instructions spelled out by this DNA alphabet can be changed, however, by mutations, and this may alter the instructions carried within the genes. Within the cell, the genes are carried in chromosomes, which are packages for carrying the DNA. It is the reshuffling of the chromosomes that results in unique combinations of genes in offspring. Since genes interact with one another during the development of an organism, novel combinations of genes produced by sexual reproduction can increase the genetic variability of the population even without new mutations. The genetic variability of a population can also increase when members of that population interbreed with individuals from a different population causing gene flow between the populations. This can introduce genes into a population that were not present before.

Evolution is not a random process. Although mutations in DNA are random, natural selection is not a process of chance: the environment determines the probability of reproductive success. Evolution is an inevitable result of imperfectly copying, self-replicating organisms reproducing over billions of years under the selective pressure of the environment. The outcome of evolution is not a perfectly designed organism. The end products of natural selection are organisms that are adapted to their present environments. Natural selection does not involve progress towards an ultimate goal. Evolution does not strive for more advanced, more intelligent, or more sophisticated life forms. For example, fleas (wingless parasites) are descended from a winged, ancestral scorpionfly, and snakes are lizards that no longer require limbs—although pythons still grow tiny structures that are the remains of their ancestor's hind legs. Organisms are merely the outcome of variations that succeed or fail, dependent upon the environmental conditions at the time. 

Rapid environmental changes typically cause extinctions. Of all species that have existed on Earth, 99.9 percent are now extinct. Since life began on Earth, five major mass extinctions have led to large and sudden drops in the variety of species. The most recent, the Cretaceous–Paleogene extinction event, occurred 66 million years ago.

Genetic drift

Genetic drift is a cause of allelic frequency change within populations of a species. Alleles are different variations of specific genes. They determine things like hair color, skin tone, eye color and blood type; in other words, all the genetic traits that vary between individuals. Genetic drift does not introduce new alleles to a population, but it can reduce variation within a population by removing an allele from the gene pool. Genetic drift is caused by random sampling of alleles. A truly random sample is a sample in which no outside forces affect what is selected. It is like pulling marbles of the same size and weight but of different colors from a brown paper bag. In any offspring, the alleles present are samples of the previous generations alleles, and chance plays a role in whether an individual survives to reproduce and to pass a sample of their generation onward to the next. The allelic frequency of a population is the ratio of the copies of one specific allele that share the same form compared to the number of all forms of the allele present in the population.

Genetic drift affects smaller populations more than it affects larger populations.

Hardy–Weinberg principle

The Hardy–Weinberg principle states that under certain idealized conditions, including the absence of selection pressures, a large population will have no change in the frequency of alleles as generations pass. A population that satisfies these conditions is said to be in Hardy–Weinberg equilibrium. In particular, Hardy and Weinberg showed that dominant and recessive alleles do not automatically tend to become more and less frequent respectively, as had been thought previously.

The conditions for Hardy-Weinberg equilibrium include that there must be no mutations, immigration, or emigration, all of which can directly change allelic frequencies. Additionally, mating must be totally random, with all males (or females in some cases) being equally desirable mates. This ensures a true random mixing of alleles. A population that is in Hardy–Weinberg equilibrium is analogous to a deck of cards; no matter how many times the deck is shuffled, no new cards are added and no old ones are taken away. Cards in the deck represent alleles in a population’s gene pool.

In practice, no population can be in perfect Hardy-Weinberg equilibrium. The population's finite size, combined with natural selection and many other effects, cause the allelic frequencies to change over time.

Population bottleneck

Model of population bottleneck illustrates how alleles can be lost
 
A population bottleneck occurs when the population of a species is reduced drastically over a short period of time due to external forces. In a true population bottleneck, the reduction does not favor any combination of alleles; it is totally random chance which individuals survive. A bottleneck can reduce or eliminate genetic variation from a population. Further drift events after the bottleneck event can also reduce the population's genetic diversity. The lack of diversity created can make the population at risk to other selective pressures.

A common example of a population bottleneck is the Northern elephant seal. Due to excessive hunting throughout the 19th century, the population of the northern elephant seal was reduced to 30 individuals or less. They have made a full recovery, with the total number of individuals at around 100,000 and growing. The effects of the bottleneck are visible, however. The seals are more likely to have serious problems with disease or genetic disorders, because there is almost no diversity in the population.

Founder effect

In the founder effect, small new populations contain different allele frequencies from the parent population.
 
The founder effect occurs when a small group from one population splits off and forms a new population, often through geographic isolation. This new population's allelic frequency is probably different from the original population's, and will change how common certain alleles are in the populations. The founders of the population will determine the genetic makeup, and potentially the survival, of the new population for generations.

One example of the founder effect is found in the Amish migration to Pennsylvania in 1744. Two of the founders of the colony in Pennsylvania carried the recessive allele for Ellis–van Creveld syndrome. Because the Amish tend to be religious isolates, they interbreed, and through generations of this practice the frequency of Ellis–van Creveld syndrome in the Amish people is much higher than the frequency in the general population.

Modern synthesis

The modern evolutionary synthesis is based on the concept that populations of organisms have significant genetic variation caused by mutation and by the recombination of genes during sexual reproduction. It defines evolution as the change in allelic frequencies within a population caused by genetic drift, gene flow between sub populations, and natural selection. Natural selection is emphasised as the most important mechanism of evolution; large changes are the result of the gradual accumulation of small changes over long periods of time.

The modern evolutionary synthesis is the outcome of a merger of several different scientific fields to produce a more cohesive understanding of evolutionary theory. In the 1920s, Ronald Fisher, J.B.S. Haldane and Sewall Wright combined Darwin's theory of natural selection with statistical models of Mendelian genetics, founding the discipline of population genetics. In the 1930s and 1940s, efforts were made to merge population genetics, the observations of field naturalists on the distribution of species and sub species, and analysis of the fossil record into a unified explanatory model. The application of the principles of genetics to naturally occurring populations, by scientists such as Theodosius Dobzhansky and Ernst Mayr, advanced the understanding of the processes of evolution. Dobzhansky's 1937 work Genetics and the Origin of Species helped bridge the gap between genetics and field biology by presenting the mathematical work of the population geneticists in a form more useful to field biologists, and by showing that wild populations had much more genetic variability with geographically isolated subspecies and reservoirs of genetic diversity in recessive genes than the models of the early population geneticists had allowed for. Mayr, on the basis of an understanding of genes and direct observations of evolutionary processes from field research, introduced the biological species concept, which defined a species as a group of interbreeding or potentially interbreeding populations that are reproductively isolated from all other populations. Both Dobzhansky and Mayr emphasised the importance of subspecies reproductively isolated by geographical barriers in the emergence of new species. The paleontologist George Gaylord Simpson helped to incorporate paleontology with a statistical analysis of the fossil record that showed a pattern consistent with the branching and non-directional pathway of evolution of organisms predicted by the modern synthesis.

Evidence for evolution

During the second voyage of HMS Beagle, naturalist Charles Darwin collected fossils in South America, and found fragments of armor which he thought were like giant versions of the scales on the modern armadillos living nearby. On his return, the anatomist Richard Owen showed him that the fragments were from gigantic extinct glyptodons, related to the armadillos. This was one of the patterns of distribution that helped Darwin to develop his theory.

Scientific evidence for evolution comes from many aspects of biology and includes fossils, homologous structures, and molecular similarities between species' DNA.

Fossil record

Research in the field of paleontology, the study of fossils, supports the idea that all living organisms are related. Fossils provide evidence that accumulated changes in organisms over long periods of time have led to the diverse forms of life we see today. A fossil itself reveals the organism's structure and the relationships between present and extinct species, allowing paleontologists to construct a family tree for all of the life forms on Earth.

Modern paleontology began with the work of Georges Cuvier. Cuvier noted that, in sedimentary rock, each layer contained a specific group of fossils. The deeper layers, which he proposed to be older, contained simpler life forms. He noted that many forms of life from the past are no longer present today. One of Cuvier’s successful contributions to the understanding of the fossil record was establishing extinction as a fact. In an attempt to explain extinction, Cuvier proposed the idea of "revolutions" or catastrophism in which he speculated that geological catastrophes had occurred throughout the Earth’s history, wiping out large numbers of species. Cuvier's theory of revolutions was later replaced by uniformitarian theories, notably those of James Hutton and Charles Lyell who proposed that the Earth’s geological changes were gradual and consistent. However, current evidence in the fossil record supports the concept of mass extinctions. As a result, the general idea of catastrophism has re-emerged as a valid hypothesis for at least some of the rapid changes in life forms that appear in the fossil records. 

A very large number of fossils have now been discovered and identified. These fossils serve as a chronological record of evolution. The fossil record provides examples of transitional species that demonstrate ancestral links between past and present life forms. One such transitional fossil is Archaeopteryx, an ancient organism that had the distinct characteristics of a reptile (such as a long, bony tail and conical teeth) yet also had characteristics of birds (such as feathers and a wishbone). The implication from such a find is that modern reptiles and birds arose from a common ancestor.

Comparative anatomy

The comparison of similarities between organisms of their form or appearance of parts, called their morphology, has long been a way to classify life into closely related groups. This can be done by comparing the structure of adult organisms in different species or by comparing the patterns of how cells grow, divide and even migrate during an organism's development.

Taxonomy

Taxonomy is the branch of biology that names and classifies all living things. Scientists use morphological and genetic similarities to assist them in categorising life forms based on ancestral relationships. For example, orangutans, gorillas, chimpanzees, and humans all belong to the same taxonomic grouping referred to as a family—in this case the family called Hominidae. These animals are grouped together because of similarities in morphology that come from common ancestry (called homology).

A bat is a mammal and its forearm bones have been adapted for flight.
 
Strong evidence for evolution comes from the analysis of homologous structures: structures in different species that no longer perform the same task but which share a similar structure. Such is the case of the forelimbs of mammals. The forelimbs of a human, cat, whale, and bat all have strikingly similar bone structures. However, each of these four species' forelimbs performs a different task. The same bones that construct a bat's wings, which are used for flight, also construct a whale's flippers, which are used for swimming. Such a "design" makes little sense if they are unrelated and uniquely constructed for their particular tasks. The theory of evolution explains these homologous structures: all four animals shared a common ancestor, and each has undergone change over many generations. These changes in structure have produced forelimbs adapted for different tasks.

The bird and the bat wing are examples of convergent evolution.
 
However, anatomical comparisons can be misleading, as not all anatomical similarities indicate a close relationship. Organisms that share similar environments will often develop similar physical features, a process known as convergent evolution. Both sharks and dolphins have similar body forms, yet are only distantly related—sharks are fish and dolphins are mammals. Such similarities are a result of both populations being exposed to the same selective pressures. Within both groups, changes that aid swimming have been favored. Thus, over time, they developed similar appearances (morphology), even though they are not closely related.

Embryology

In some cases, anatomical comparison of structures in the embryos of two or more species provides evidence for a shared ancestor that may not be obvious in the adult forms. As the embryo develops, these homologies can be lost to view, and the structures can take on different functions. Part of the basis of classifying the vertebrate group (which includes humans), is the presence of a tail (extending beyond the anus) and pharyngeal slits. Both structures appear during some stage of embryonic development but are not always obvious in the adult form.

Because of the morphological similarities present in embryos of different species during development, it was once assumed that organisms re-enact their evolutionary history as an embryo. It was thought that human embryos passed through an amphibian then a reptilian stage before completing their development as mammals. Such a reenactment, often called recapitulation theory, is not supported by scientific evidence. What does occur, however, is that the first stages of development are similar in broad groups of organisms. At very early stages, for instance, all vertebrates appear extremely similar, but do not exactly resemble any ancestral species. As development continues, specific features emerge from this basic pattern.

Vestigial structures

Homology includes a unique group of shared structures referred to as vestigial structures. Vestigial refers to anatomical parts that are of minimal, if any, value to the organism that possesses them. These apparently illogical structures are remnants of organs that played an important role in ancestral forms. Such is the case in whales, which have small vestigial bones that appear to be remnants of the leg bones of their ancestors which walked on land. Humans also have vestigial structures, including the ear muscles, the wisdom teeth, the appendix, the tail bone, body hair (including goose bumps), and the semilunar fold in the corner of the eye.

Biogeography

Four of the Galápagos finch species, produced by an adaptive radiation that diversified their beaks for different food sources
 
Biogeography is the study of the geographical distribution of species. Evidence from biogeography, especially from the biogeography of oceanic islands, played a key role in convincing both Darwin and Alfred Russel Wallace that species evolved with a branching pattern of common descent. Islands often contain endemic species, species not found anywhere else, but those species are often related to species found on the nearest continent. Furthermore, islands often contain clusters of closely related species that have very different ecological niches, that is have different ways of making a living in the environment. Such clusters form through a process of adaptive radiation where a single ancestral species colonises an island that has a variety of open ecological niches and then diversifies by evolving into different species adapted to fill those empty niches. Well-studied examples include Darwin's finches, a group of 13 finch species endemic to the Galápagos Islands, and the Hawaiian honeycreepers, a group of birds that once, before extinctions caused by humans, numbered 60 species filling diverse ecological roles, all descended from a single finch like ancestor that arrived on the Hawaiian Islands some 4 million years ago. Another example is the Silversword alliance, a group of perennial plant species, also endemic to the Hawaiian Islands, that inhabit a variety of habitats and come in a variety of shapes and sizes that include trees, shrubs, and ground hugging mats, but which can be hybridised with one another and with certain tarweed species found on the west coast of North America; it appears that one of those tarweeds colonised Hawaii in the past, and gave rise to the entire Silversword alliance.

Molecular biology

A section of DNA
 
Every living organism (with the possible exception of RNA viruses) contains molecules of DNA, which carries genetic information. Genes are the pieces of DNA that carry this information, and they influence the properties of an organism. Genes determine an individual's general appearance and to some extent their behavior. If two organisms are closely related, their DNA will be very similar. On the other hand, the more distantly related two organisms are, the more differences they will have. For example, brothers are closely related and have very similar DNA, while cousins share a more distant relationship and have far more differences in their DNA. Similarities in DNA are used to determine the relationships between species in much the same manner as they are used to show relationships between individuals. For example, comparing chimpanzees with gorillas and humans shows that there is as much as a 96 percent similarity between the DNA of humans and chimps. Comparisons of DNA indicate that humans and chimpanzees are more closely related to each other than either species is to gorillas.

The field of molecular systematics focuses on measuring the similarities in these molecules and using this information to work out how different types of organisms are related through evolution. These comparisons have allowed biologists to build a relationship tree of the evolution of life on Earth. They have even allowed scientists to unravel the relationships between organisms whose common ancestors lived such a long time ago that no real similarities remain in the appearance of the organisms.

Artificial selection

The results of artificial selection: a Chihuahua mix and a Great Dane
 
Artificial selection is the controlled breeding of domestic plants and animals. Humans determine which animal or plant will reproduce and which of the offspring will survive; thus, they determine which genes will be passed on to future generations. The process of artificial selection has had a significant impact on the evolution of domestic animals. For example, people have produced different types of dogs by controlled breeding. The differences in size between the Chihuahua and the Great Dane are the result of artificial selection. Despite their dramatically different physical appearance, they and all other dogs evolved from a few wolves domesticated by humans in what is now China less than 15,000 years ago.

Artificial selection has produced a wide variety of plants. In the case of maize (corn), recent genetic evidence suggests that domestication occurred 10,000 years ago in central Mexico. Prior to domestication, the edible portion of the wild form was small and difficult to collect. Today The Maize Genetics Cooperation • Stock Center maintains a collection of more than 10,000 genetic variations of maize that have arisen by random mutations and chromosomal variations from the original wild type.

In artificial selection the new breed or variety that emerges is the one with random mutations attractive to humans, while in natural selection the surviving species is the one with random mutations useful to it in its non-human environment. In both natural and artificial selection the variations are a result of random mutations, and the underlying genetic processes are essentially the same. Darwin carefully observed the outcomes of artificial selection in animals and plants to form many of his arguments in support of natural selection. Much of his book On the Origin of Species was based on these observations of the many varieties of domestic pigeons arising from artificial selection. Darwin proposed that if humans could achieve dramatic changes in domestic animals in short periods, then natural selection, given millions of years, could produce the differences seen in living things today.

Coevolution

Coevolution is a process in which two or more species influence the evolution of each other. All organisms are influenced by life around them; however, in coevolution there is evidence that genetically determined traits in each species directly resulted from the interaction between the two organisms.

An extensively documented case of coevolution is the relationship between Pseudomyrmex, a type of ant, and the acacia, a plant that the ant uses for food and shelter. The relationship between the two is so intimate that it has led to the evolution of special structures and behaviors in both organisms. The ant defends the acacia against herbivores and clears the forest floor of the seeds from competing plants. In response, the plant has evolved swollen thorns that the ants use as shelter and special flower parts that the ants eat. Such coevolution does not imply that the ants and the tree choose to behave in an altruistic manner. Rather, across a population small genetic changes in both ant and tree benefited each. The benefit gave a slightly higher chance of the characteristic being passed on to the next generation. Over time, successive mutations created the relationship we observe today.

Speciation

There are numerous species of cichlids that demonstrate dramatic variations in morphology.

Given the right circumstances, and enough time, evolution leads to the emergence of new species. Scientists have struggled to find a precise and all-inclusive definition of species. Ernst Mayr defined a species as a population or group of populations whose members have the potential to interbreed naturally with one another to produce viable, fertile offspring. (The members of a species cannot produce viable, fertile offspring with members of other species). Mayr's definition has gained wide acceptance among biologists, but does not apply to organisms such as bacteria, which reproduce asexually

Speciation is the lineage-splitting event that results in two separate species forming from a single common ancestral population. A widely accepted method of speciation is called allopatric speciation. Allopatric speciation begins when a population becomes geographically separated. Geological processes, such as the emergence of mountain ranges, the formation of canyons, or the flooding of land bridges by changes in sea level may result in separate populations. For speciation to occur, separation must be substantial, so that genetic exchange between the two populations is completely disrupted. In their separate environments, the genetically isolated groups follow their own unique evolutionary pathways. Each group will accumulate different mutations as well as be subjected to different selective pressures. The accumulated genetic changes may result in separated populations that can no longer interbreed if they are reunited. Barriers that prevent interbreeding are either prezygotic (prevent mating or fertilisation) or postzygotic (barriers that occur after fertilisation). If interbreeding is no longer possible, then they will be considered different species. The result of four billion years of evolution is the diversity of life around us, with an estimated 1.75 million different species in existence today.

Usually the process of speciation is slow, occurring over very long time spans; thus direct observations within human life-spans are rare. However speciation has been observed in present-day organisms, and past speciation events are recorded in fossils. Scientists have documented the formation of five new species of cichlid fishes from a single common ancestor that was isolated fewer than 5,000 years ago from the parent stock in Lake Nagubago. The evidence for speciation in this case was morphology (physical appearance) and lack of natural interbreeding. These fish have complex mating rituals and a variety of colorations; the slight modifications introduced in the new species have changed the mate selection process and the five forms that arose could not be convinced to interbreed.

Mechanism

The theory of evolution is widely accepted among the scientific community, serving to link the diverse specialty areas of biology. Evolution provides the field of biology with a solid scientific base. The significance of evolutionary theory is summarised by Theodosius Dobzhansky as "nothing in biology makes sense except in the light of evolution." Nevertheless, the theory of evolution is not static. There is much discussion within the scientific community concerning the mechanisms behind the evolutionary process. For example, the rate at which evolution occurs is still under discussion. In addition, there are conflicting opinions as to which is the primary unit of evolutionary change—the organism or the gene.

Rate of change

Darwin and his contemporaries viewed evolution as a slow and gradual process. Evolutionary trees are based on the idea that profound differences in species are the result of many small changes that accumulate over long periods. 

Gradualism had its basis in the works of the geologists James Hutton and Charles Lyell. Hutton's view suggests that profound geological change was the cumulative product of a relatively slow continuing operation of processes which can still be seen in operation today, as opposed to catastrophism which promoted the idea that sudden changes had causes which can no longer be seen at work. A uniformitarian perspective was adopted for biological changes. Such a view can seem to contradict the fossil record, which often shows evidence of new species appearing suddenly, then persisting in that form for long periods. In the 1970s paleontologists Niles Eldredge and Stephen Jay Gould developed a theoretical model that suggests that evolution, although a slow process in human terms, undergoes periods of relatively rapid change (ranging between 50,000 and 100,000 years) alternating with long periods of relative stability. Their theory is called punctuated equilibrium and explains the fossil record without contradicting Darwin's ideas.

Unit of change

A common unit of selection in evolution is the organism. Natural selection occurs when the reproductive success of an individual is improved or reduced by an inherited characteristic, and reproductive success is measured by the number of an individual's surviving offspring. The organism view has been challenged by a variety of biologists as well as philosophers. Richard Dawkins proposes that much insight can be gained if we look at evolution from the gene's point of view; that is, that natural selection operates as an evolutionary mechanism on genes as well as organisms. In his 1976 book, The Selfish Gene, he explains:


Others view selection working on many levels, not just at a single level of organism or gene; for example, Stephen Jay Gould called for a hierarchical perspective on selection.

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