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Sunday, January 14, 2024

List of examples of convergent evolution

From Wikipedia, the free encyclopedia

Convergent evolution—the repeated evolution of similar traits in multiple lineages which all ancestrally lack the trait—is rife in nature, as illustrated by the examples below. The ultimate cause of convergence is usually a similar evolutionary biome, as similar environments will select for similar traits in any species occupying the same ecological niche, even if those species are only distantly related. In the case of cryptic species, it can create species which are only distinguishable by analysing their genetics. Distantly related organisms often develop analogous structures by adapting to similar environments.

In animals

The skulls of the thylacine (left) and the grey wolf, Canis lupus, are similar, although the species are only very distantly related (different infraclasses). The skull shape of the red fox, Vulpes vulpes, is even closer to that of the thylacine.

Mammals

Prehistoric reptiles

Extant reptiles

  • The thorny devil (Moloch horridus) is similar in diet and activity patterns to the Texas horned lizard (Phrynosoma cornutum), although the two are not particularly closely related.
  • Amphisbaenian skulls closely resemble those of caecilians and mammals
  • Modern crocodilians resemble prehistoric phytosaurs, champsosaurs, certain labyrinthodont amphibians, and perhaps even the early whale Ambulocetus. The resemblance between the crocodilians and phytosaurs in particular is quite striking; even to the point of having evolved the graduation between narrow- and broad-snouted forms, due to differences in diet between particular species in both groups.
  • Death adders strongly resemble true vipers, but are elapids.
  • Legless lizards evolved multiple times independently, including snakes, which are also legless lepidosaurs nested among legged lizards. Major examples of unrelated legless lizards include glass lizards (family Anguidae, related to legged alligator lizards) and flap-footed lizards (family Pygopodidae, related to geckos), which each may be mistaken for snakes.
  • Large tegu lizards of South America have converged in form and ecology with monitor lizards, which are not present in the Americas.
  • Anole lizards, with populations on isolated islands, are one of the best examples of both adaptive radiation and convergent evolution. Anoles on a given island evolve into multiple body types and ecological preferences, and the same set of body types appears in unrelated species across distant islands.
  • The Asian sea snake Enhydrina schistosa (beaked sea snake) looks just like the Australian sea snake Enhydrina zweifeli, but in fact is not related.
  • The emerald tree boa and the green tree python are from two different families (boas and pythons), yet are very similar in appearance and ecology.

Avian

Fish

  • Aquatic animals that swim by using an elongated fin along the dorsum, ventrum, or in pairs on their lateral margins (such as Oarfish, Knifefish, Cephalopods) have all come to the same ratio of amplitude to wavelength of fin undulation to maximize speed, 20:1.
  • Mudskippers and exhibit a number of adaptations to semi-terrestrial lifestyle which are also usually attributed to Devonian tetrapodomorphs such as Tiktaalik: breathing surface air, having eyes positioned on top of the head, propping up and moving on land using strong fins. Pacific leaping blennies also resemble mudskippers though they are not related.

Amphibians

Arthropods

Pill bugs look like pill millipedes, but are actually wood lice that have converged on the same defenses, until they are difficult to tell apart

Molluscs

In vertebrate eyes, the nerve fibers route before the retina, blocking some light and creating a blind spot where the fibers pass through the retina and out of the eye. In octopus eyes, the nerve fibers route behind the retina, and do not block light or disrupt the retina. In the example, 4 denotes the vertebrate blind spot, which is notably absent in the octopus eye. In both images, 1 denotes the retina and 2 the nerve fibers, including the optic nerve (3).
  • Bivalves and the gastropods in the family Juliidae have very similar shells.
  • There are limpet-like forms in several lines of gastropods: "true" limpets, pulmonate siphonariid limpets and several lineages of pulmonate freshwater limpets.
  • Cephalopod (like in octopuses & squid) and vertebrate eyes are both lens-camera eyes with much overall similarity, yet are very unrelated species. A closer examination reveals some differences including embryonic development, extraocular muscles, number of lens parts, and the lack of a retinal blindspot in the cephalopod eye.
  • Swim bladders: Buoyant bladders independently evolved in fishes, the tuberculate pelagic octopus, and siphonophores such as the Portuguese man o' war.
  • Bivalves and brachiopods independently evolved paired hinged shells for protection. However, the anatomy of their soft parts is very dissimilar, which is why molluscs and brachiopods are put into different phyla.
  • Jet propulsion in squids and in scallops: these two groups of mollusks have very different ways of squeezing water through their bodies in order to power rapid movement through a fluid. (Dragonfly larvae in the aquatic stage also use an anal jet to propel them, and jellyfish have used jet propulsion for a very long time.). Sea hares (gastropod molluscs) employ a similar means of jet propulsion, but without the sophisticated neurological machinery of cephalopods they navigate somewhat more clumsily. Tunicates (such as salps), and some jellyfish also employ jet propulsion. The most efficient jet-propelled organisms are the salps, which use an order of magnitude less energy (per kilogram per metre) than squid.
  • The free-swimming sea slug Phylliroe is notable for being a pelagic hunter that resembles a fish in body plan and locomotion, with functional convergences.

Other

In plants

In fungi

In proteins, enzymes and biochemical pathways

Functional convergence

Evolutionary convergence of serine and cysteine protease towards the same catalytic triads organisation of acid-base-nucleophile in different protease superfamilies. Shown are the triads of subtilisin, prolyl oligopeptidase, TEV protease, and papain.
 
Evolutionary convergence of threonine proteases towards the same N-terminal active site organisation. Shown are the catalytic threonine of the proteasome and ornithine acetyltransferase.

Here is a list of examples in which unrelated proteins have similar functions with different structure.

  • The convergent orientation of the catalytic triad in the active site of serine and cysteine proteases independently in over 20 enzyme superfamilies.
  • The use of an N-terminal threonine for proteolysis.
  • The existence of distinct families of carbonic anhydrase is believed to illustrate convergent evolution.
  • The use of (Z)-7-dodecen-1-yl acetate as a sex pheromone by the Asian elephant (Elephas maximus) and by more than 100 species of Lepidoptera.
  • The biosynthesis of plant hormones such as gibberellin and abscisic acid by different biochemical pathways in plants and fungi.
  • The protein prestin that drives the cochlea amplifier and confers high auditory sensitivity in mammals, shows numerous convergent amino acid replacements in bats and dolphins, both of which have independently evolved high frequency hearing for echolocation. This same signature of convergence has also been found in other genes expressed in the mammalian cochlea
  • The repeated independent evolution of nylonase in two different strains of Flavobacterium and one strain of Pseudomonas.
  • The myoglobin from the abalone Sulculus diversicolor has a different structure from normal myoglobin but serves a similar function — binding oxygen reversibly. "The molecular weight of Sulculus myoglobin is 41kD, 2.5 times larger than other myoglobins." Moreover, its amino acid sequence has no homology with other invertebrate myoglobins or with hemoglobins, but is 35% homologous with human indoleamine dioxygenase (IDO), a vertebrate tryptophan-degrading enzyme. It does not share similar function with IDO. "The IDO-like myoglobin is unexpectedly widely distributed among gastropodic molluscs, such as Sulculus, Nordotis, Battilus, Omphalius and Chlorostoma."
  • The hemocyanin from arthropods and molluscs evolved from different ancestors, tyrosinase and insect storage proteins, respectively. They have different molecular weight and structure. However, the proteins both use copper binding sites to transport oxygen.
  • The hexokinase, ribokinase, and galactokinase families of sugar kinases have similar enzymatic functions of sugar phosphorylation, but they evolved from three distinct nonhomologous families since they all have distinct three-dimensional folding and their conserved sequence patterns are strikingly different.
  • Hemoglobins in jawed vertebrates and jawless fish evolved independently. The oxygen-binding hemoglobins of jawless fish evolved from an ancestor of cytoglobin which has no oxygen transport function and is expressed in fibroblast cells.
  • Toxic agent, serine protease BLTX, in the venom produced by two distinct species, the North American short-tailed shrew (Blarina brevicauda) and the Mexican beaded lizard, undergo convergent evolution. Although their structures are similar, it turns out that they increased the enzyme activity and toxicity through different way of structure changes. These changes are not found in the other non-venomous reptiles or mammals.
  • Another toxin BgK, a K+ channel-blocking toxin from the sea anemone Bunodosoma granulifera and scorpions adopt distinct scaffolds and unrelated structures, however, they have similar functions.
  • Antifreeze proteins are a perfect example of convergent evolution. Different small proteins with a flat surface which is rich in threonine from different organisms are selected to bind to the surface of ice crystals. "These include two proteins from fish, the ocean pout and the winter flounder, and three very active proteins from insects, the yellow mealworm beetle, the spruce budworm moth, and the snow flea."
  • RNA-binding proteins which contain RNA-binding domain (RBD) and the cold-shock domain (CSD) protein family are also an example of convergent evolution. Except that they both have conserved RNP motifs, other protein sequence are totally different. However, they have a similar function.
  • Blue-light-receptive cryptochrome expressed in the sponge eyes likely evolved convergently in the absence of opsins and nervous systems. The fully sequenced genome of Amphimedon queenslandica, a demosponge larvae, lacks one vital visual component: opsin-a gene for a light-sensitive opsin pigment which is essential for vision in other animals.
  • The structure of immunoglobulin G-binding bacterial proteins A and H do not contain any sequences homologous to the constant repeats of IgG antibodies, but they have similar functions. Both protein G, A, H are inhibited in the interactions with IgG antibodies (IgGFc) by a synthetic peptide corresponding to an 11-amino-acid-long sequence in the COOH-terminal region of the repeats.
  • The evolution of cardiotonic steroid (CTS) resistance via amino acid substitutions at well-defined positions of the Na+,K+-ATPase α-subunit in multiple insect species spanning 6 orders.

Structural convergence

Here is a list of examples in which unrelated proteins have similar tertiary structures but different functions. Whole protein structural convergence is not thought to occur but some convergence of pockets and secondary structural elements have been documented.

  • Some secondary structure convergence occurs due to some residues favouring being in α-helix (helical propensity) and for hydrophobic patches or pocket to be formed at the ends of the parallel sheets.
  • ABAC is a database of convergently evolved protein interaction interfaces. Examples comprise fibronectin/long chain cytokines, NEF/SH2, cyclophilin/capsid proteins.

Mutational convergence

The most well-studied example is the Spike protein of SARS-CoV-2, which independently evolved at the same positions regardless of the underlying sublineage. The most ominent examples from the pre-Omicron era were E484K and N501Y, while in the Omicron era examples include R493Q, R346X, N444X, L452X, N460X, F486X, and F490X.

Lie point symmetry

From Wikipedia, the free encyclopedia https://en.wikipedia.org/wiki/Lie_point_symmetry     ...